co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G45490

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0016553: base conversion or substitution editing	0.00E+00
2	GO:0042493: response to drug	0.00E+00
3	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
4	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.00E-05
5	GO:0009828: plant-type cell wall loosening	6.35E-05
6	GO:0032544: plastid translation	7.69E-05
7	GO:0010206: photosystem II repair	9.49E-05
8	GO:0043489: RNA stabilization	1.04E-04
9	GO:0042371: vitamin K biosynthetic process	1.04E-04
10	GO:0010541: acropetal auxin transport	2.44E-04
11	GO:0001736: establishment of planar polarity	2.44E-04
12	GO:0006898: receptor-mediated endocytosis	2.44E-04
13	GO:0009735: response to cytokinin	2.85E-04
14	GO:0042254: ribosome biogenesis	2.98E-04
15	GO:0009664: plant-type cell wall organization	3.32E-04
16	GO:0090391: granum assembly	4.05E-04
17	GO:0016045: detection of bacterium	4.05E-04
18	GO:0010359: regulation of anion channel activity	4.05E-04
19	GO:0080055: low-affinity nitrate transport	4.05E-04
20	GO:0010160: formation of animal organ boundary	4.05E-04
21	GO:0015979: photosynthesis	5.00E-04
22	GO:0009650: UV protection	5.82E-04
23	GO:0046739: transport of virus in multicellular host	5.82E-04
24	GO:1901332: negative regulation of lateral root development	5.82E-04
25	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	5.82E-04
26	GO:0080170: hydrogen peroxide transmembrane transport	5.82E-04
27	GO:0043481: anthocyanin accumulation in tissues in response to UV light	5.82E-04
28	GO:0034220: ion transmembrane transport	6.23E-04
29	GO:0006412: translation	6.61E-04
30	GO:0009958: positive gravitropism	6.70E-04
31	GO:0030104: water homeostasis	7.73E-04
32	GO:0010236: plastoquinone biosynthetic process	9.77E-04
33	GO:0045490: pectin catabolic process	1.13E-03
34	GO:0010027: thylakoid membrane organization	1.16E-03
35	GO:0060918: auxin transport	1.19E-03
36	GO:0006751: glutathione catabolic process	1.19E-03
37	GO:0009734: auxin-activated signaling pathway	1.23E-03
38	GO:0009627: systemic acquired resistance	1.29E-03
39	GO:0015995: chlorophyll biosynthetic process	1.36E-03
40	GO:0042372: phylloquinone biosynthetic process	1.43E-03
41	GO:0009733: response to auxin	1.44E-03
42	GO:0010311: lateral root formation	1.58E-03
43	GO:0009772: photosynthetic electron transport in photosystem II	1.67E-03
44	GO:0010196: nonphotochemical quenching	1.67E-03
45	GO:0009416: response to light stimulus	1.75E-03
46	GO:0009826: unidimensional cell growth	1.85E-03
47	GO:0042255: ribosome assembly	1.93E-03
48	GO:0006353: DNA-templated transcription, termination	1.93E-03
49	GO:0009658: chloroplast organization	1.94E-03
50	GO:0030001: metal ion transport	2.16E-03
51	GO:0010497: plasmodesmata-mediated intercellular transport	2.21E-03
52	GO:0009926: auxin polar transport	2.44E-03
53	GO:0009245: lipid A biosynthetic process	2.49E-03
54	GO:0009638: phototropism	2.79E-03
55	GO:0009299: mRNA transcription	3.10E-03
56	GO:0006535: cysteine biosynthetic process from serine	3.10E-03
57	GO:0048829: root cap development	3.10E-03
58	GO:0006949: syncytium formation	3.10E-03
59	GO:0048765: root hair cell differentiation	3.42E-03
60	GO:0010015: root morphogenesis	3.42E-03
61	GO:0052544: defense response by callose deposition in cell wall	3.42E-03
62	GO:0008361: regulation of cell size	3.75E-03
63	GO:0016024: CDP-diacylglycerol biosynthetic process	3.75E-03
64	GO:0016042: lipid catabolic process	4.02E-03
65	GO:0009725: response to hormone	4.09E-03
66	GO:0010102: lateral root morphogenesis	4.09E-03
67	GO:0009785: blue light signaling pathway	4.09E-03
68	GO:0010540: basipetal auxin transport	4.44E-03
69	GO:0010143: cutin biosynthetic process	4.44E-03
70	GO:0009624: response to nematode	4.64E-03
71	GO:0006636: unsaturated fatty acid biosynthetic process	5.18E-03
72	GO:0006833: water transport	5.18E-03
73	GO:0019762: glucosinolate catabolic process	5.18E-03
74	GO:0051017: actin filament bundle assembly	5.56E-03
75	GO:0019344: cysteine biosynthetic process	5.56E-03
76	GO:0007017: microtubule-based process	5.95E-03
77	GO:0003333: amino acid transmembrane transport	6.35E-03
78	GO:0009411: response to UV	7.18E-03
79	GO:0048443: stamen development	7.61E-03
80	GO:0006284: base-excision repair	7.61E-03
81	GO:0040008: regulation of growth	7.63E-03
82	GO:0080022: primary root development	8.49E-03
83	GO:0008033: tRNA processing	8.49E-03
84	GO:0042335: cuticle development	8.49E-03
85	GO:0009739: response to gibberellin	8.95E-03
86	GO:0016032: viral process	1.09E-02
87	GO:0032502: developmental process	1.09E-02
88	GO:0009630: gravitropism	1.09E-02
89	GO:0030163: protein catabolic process	1.14E-02
90	GO:0009639: response to red or far red light	1.19E-02
91	GO:0009567: double fertilization forming a zygote and endosperm	1.19E-02
92	GO:0080167: response to karrikin	1.54E-02
93	GO:0016311: dephosphorylation	1.57E-02
94	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.59E-02
95	GO:0010218: response to far red light	1.74E-02
96	GO:0048527: lateral root development	1.80E-02
97	GO:0007568: aging	1.80E-02
98	GO:0009631: cold acclimation	1.80E-02
99	GO:0006865: amino acid transport	1.86E-02
100	GO:0045087: innate immune response	1.92E-02
101	GO:0009637: response to blue light	1.92E-02
102	GO:0006281: DNA repair	2.28E-02
103	GO:0009640: photomorphogenesis	2.30E-02
104	GO:0010114: response to red light	2.30E-02
105	GO:0006857: oligopeptide transport	2.99E-02
106	GO:0009409: response to cold	3.09E-02
107	GO:0009740: gibberellic acid mediated signaling pathway	3.50E-02
108	GO:0042545: cell wall modification	3.58E-02
109	GO:0006396: RNA processing	3.73E-02
110	GO:0009742: brassinosteroid mediated signaling pathway	3.81E-02
111	GO:0009790: embryo development	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
2	GO:0016851: magnesium chelatase activity	5.09E-06
3	GO:0003735: structural constituent of ribosome	4.67E-05
4	GO:0019843: rRNA binding	7.79E-05
5	GO:0042389: omega-3 fatty acid desaturase activity	2.44E-04
6	GO:0003839: gamma-glutamylcyclotransferase activity	2.44E-04
7	GO:0016788: hydrolase activity, acting on ester bonds	2.98E-04
8	GO:0090729: toxin activity	4.05E-04
9	GO:0080054: low-affinity nitrate transmembrane transporter activity	4.05E-04
10	GO:0030570: pectate lyase activity	4.92E-04
11	GO:0004659: prenyltransferase activity	7.73E-04
12	GO:0010011: auxin binding	7.73E-04
13	GO:0010328: auxin influx transmembrane transporter activity	7.73E-04
14	GO:0008725: DNA-3-methyladenine glycosylase activity	9.77E-04
15	GO:0015250: water channel activity	1.16E-03
16	GO:0031177: phosphopantetheine binding	1.19E-03
17	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.19E-03
18	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.19E-03
19	GO:0000035: acyl binding	1.43E-03
20	GO:0004124: cysteine synthase activity	1.43E-03
21	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	1.93E-03
22	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.21E-03
23	GO:0052689: carboxylic ester hydrolase activity	2.89E-03
24	GO:0031072: heat shock protein binding	4.09E-03
25	GO:0010329: auxin efflux transmembrane transporter activity	4.09E-03
26	GO:0008266: poly(U) RNA binding	4.44E-03
27	GO:0005528: FK506 binding	5.56E-03
28	GO:0016829: lyase activity	6.27E-03
29	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	7.46E-03
30	GO:0003756: protein disulfide isomerase activity	7.61E-03
31	GO:0003727: single-stranded RNA binding	7.61E-03
32	GO:0008080: N-acetyltransferase activity	8.95E-03
33	GO:0004518: nuclease activity	1.09E-02
34	GO:0051015: actin filament binding	1.14E-02
35	GO:0016791: phosphatase activity	1.19E-02
36	GO:0005200: structural constituent of cytoskeleton	1.24E-02
37	GO:0102483: scopolin beta-glucosidase activity	1.51E-02
38	GO:0008236: serine-type peptidase activity	1.57E-02
39	GO:0004871: signal transducer activity	1.93E-02
40	GO:0003993: acid phosphatase activity	1.98E-02
41	GO:0008422: beta-glucosidase activity	2.04E-02
42	GO:0015293: symporter activity	2.50E-02
43	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.57E-02
44	GO:0046872: metal ion binding	2.76E-02
45	GO:0003690: double-stranded DNA binding	2.91E-02
46	GO:0045330: aspartyl esterase activity	3.06E-02
47	GO:0015171: amino acid transmembrane transporter activity	3.06E-02
48	GO:0004650: polygalacturonase activity	3.43E-02
49	GO:0003729: mRNA binding	3.47E-02
50	GO:0030599: pectinesterase activity	3.50E-02
51	GO:0051082: unfolded protein binding	3.66E-02
52	GO:0016746: transferase activity, transferring acyl groups	3.73E-02
53	GO:0000166: nucleotide binding	4.03E-02
54	GO:0030170: pyridoxal phosphate binding	4.62E-02
55	GO:0004252: serine-type endopeptidase activity	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009570: chloroplast stroma	4.43E-13
3	GO:0009941: chloroplast envelope	5.68E-11
4	GO:0009507: chloroplast	1.13E-09
5	GO:0009579: thylakoid	4.10E-08
6	GO:0005840: ribosome	4.78E-07
7	GO:0010007: magnesium chelatase complex	2.15E-06
8	GO:0009535: chloroplast thylakoid membrane	1.02E-05
9	GO:0009534: chloroplast thylakoid	7.66E-05
10	GO:0009543: chloroplast thylakoid lumen	7.79E-05
11	GO:0009515: granal stacked thylakoid	1.04E-04
12	GO:0043674: columella	1.04E-04
13	GO:0031977: thylakoid lumen	2.20E-04
14	GO:0005576: extracellular region	2.65E-04
15	GO:0009509: chromoplast	4.05E-04
16	GO:0015630: microtubule cytoskeleton	5.82E-04
17	GO:0005618: cell wall	1.18E-03
18	GO:0042807: central vacuole	1.67E-03
19	GO:0009986: cell surface	1.67E-03
20	GO:0009533: chloroplast stromal thylakoid	1.67E-03
21	GO:0008180: COP9 signalosome	2.49E-03
22	GO:0005768: endosome	4.34E-03
23	GO:0030095: chloroplast photosystem II	4.44E-03
24	GO:0042651: thylakoid membrane	5.95E-03
25	GO:0009654: photosystem II oxygen evolving complex	5.95E-03
26	GO:0016020: membrane	7.06E-03
27	GO:0009505: plant-type cell wall	7.18E-03
28	GO:0015629: actin cytoskeleton	7.18E-03
29	GO:0005886: plasma membrane	9.06E-03
30	GO:0009523: photosystem II	9.90E-03
31	GO:0019898: extrinsic component of membrane	9.90E-03
32	GO:0009295: nucleoid	1.24E-02
33	GO:0030529: intracellular ribonucleoprotein complex	1.35E-02
34	GO:0019005: SCF ubiquitin ligase complex	1.62E-02
35	GO:0005856: cytoskeleton	2.50E-02
36	GO:0000502: proteasome complex	2.84E-02
37	GO:0005887: integral component of plasma membrane	3.09E-02
38	GO:0010008: endosome membrane	3.28E-02