Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G45260

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032889: regulation of vacuole fusion, non-autophagic0.00E+00
2GO:2000035: regulation of stem cell division0.00E+00
3GO:2000636: positive regulation of primary miRNA processing0.00E+00
4GO:0048867: stem cell fate determination0.00E+00
5GO:0016236: macroautophagy0.00E+00
6GO:0010606: positive regulation of cytoplasmic mRNA processing body assembly0.00E+00
7GO:0007160: cell-matrix adhesion0.00E+00
8GO:0006903: vesicle targeting0.00E+00
9GO:2000630: positive regulation of miRNA metabolic process0.00E+00
10GO:0010111: glyoxysome organization0.00E+00
11GO:0060321: acceptance of pollen5.12E-07
12GO:0006886: intracellular protein transport2.63E-06
13GO:0080119: ER body organization3.52E-06
14GO:0006893: Golgi to plasma membrane transport3.52E-06
15GO:0006397: mRNA processing5.03E-06
16GO:0009846: pollen germination1.25E-05
17GO:0033962: cytoplasmic mRNA processing body assembly2.44E-05
18GO:0099636: cytoplasmic streaming8.43E-05
19GO:0031338: regulation of vesicle fusion8.43E-05
20GO:0090421: embryonic meristem initiation8.43E-05
21GO:2000069: regulation of post-embryonic root development8.43E-05
22GO:0030242: pexophagy8.43E-05
23GO:1902182: shoot apical meristem development8.43E-05
24GO:0051014: actin filament severing8.43E-05
25GO:0006887: exocytosis1.48E-04
26GO:0016197: endosomal transport2.00E-04
27GO:0019395: fatty acid oxidation2.00E-04
28GO:0035542: regulation of SNARE complex assembly2.00E-04
29GO:0032012: regulation of ARF protein signal transduction3.35E-04
30GO:0090630: activation of GTPase activity3.35E-04
31GO:0006473: protein acetylation3.35E-04
32GO:0006612: protein targeting to membrane4.84E-04
33GO:0051601: exocyst localization4.84E-04
34GO:0006882: cellular zinc ion homeostasis4.84E-04
35GO:0019048: modulation by virus of host morphology or physiology4.84E-04
36GO:0045324: late endosome to vacuole transport6.44E-04
37GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA6.44E-04
38GO:0051764: actin crosslink formation6.44E-04
39GO:0000919: cell plate assembly6.44E-04
40GO:0007029: endoplasmic reticulum organization8.14E-04
41GO:0032876: negative regulation of DNA endoreduplication8.14E-04
42GO:0034052: positive regulation of plant-type hypersensitive response8.14E-04
43GO:0008380: RNA splicing9.85E-04
44GO:0006751: glutathione catabolic process9.94E-04
45GO:0015866: ADP transport9.94E-04
46GO:0048232: male gamete generation9.94E-04
47GO:0017148: negative regulation of translation1.18E-03
48GO:0006499: N-terminal protein myristoylation1.26E-03
49GO:0048528: post-embryonic root development1.39E-03
50GO:0051693: actin filament capping1.39E-03
51GO:0006875: cellular metal ion homeostasis1.60E-03
52GO:0006897: endocytosis1.70E-03
53GO:0010204: defense response signaling pathway, resistance gene-independent1.83E-03
54GO:0009880: embryonic pattern specification1.83E-03
55GO:0001708: cell fate specification2.06E-03
56GO:0016571: histone methylation2.30E-03
57GO:0008202: steroid metabolic process2.30E-03
58GO:0016573: histone acetylation2.30E-03
59GO:0071577: zinc II ion transmembrane transport2.30E-03
60GO:0030042: actin filament depolymerization2.30E-03
61GO:0010018: far-red light signaling pathway2.30E-03
62GO:0048354: mucilage biosynthetic process involved in seed coat development2.30E-03
63GO:0009870: defense response signaling pathway, resistance gene-dependent2.56E-03
64GO:0043069: negative regulation of programmed cell death2.56E-03
65GO:0006298: mismatch repair2.56E-03
66GO:0016441: posttranscriptional gene silencing2.56E-03
67GO:0006417: regulation of translation2.73E-03
68GO:0009750: response to fructose2.82E-03
69GO:0006913: nucleocytoplasmic transport2.82E-03
70GO:0010152: pollen maturation3.09E-03
71GO:0010105: negative regulation of ethylene-activated signaling pathway3.09E-03
72GO:0006890: retrograde vesicle-mediated transport, Golgi to ER3.09E-03
73GO:0008361: regulation of cell size3.09E-03
74GO:0016024: CDP-diacylglycerol biosynthetic process3.09E-03
75GO:0007015: actin filament organization3.66E-03
76GO:0007033: vacuole organization3.95E-03
77GO:0007030: Golgi organization3.95E-03
78GO:0080188: RNA-directed DNA methylation3.95E-03
79GO:0006357: regulation of transcription from RNA polymerase II promoter4.14E-03
80GO:0042753: positive regulation of circadian rhythm4.26E-03
81GO:0051017: actin filament bundle assembly4.57E-03
82GO:0006289: nucleotide-excision repair4.57E-03
83GO:0007010: cytoskeleton organization4.57E-03
84GO:0010187: negative regulation of seed germination4.57E-03
85GO:0009695: jasmonic acid biosynthetic process4.89E-03
86GO:0010073: meristem maintenance4.89E-03
87GO:0006874: cellular calcium ion homeostasis4.89E-03
88GO:0031408: oxylipin biosynthetic process5.22E-03
89GO:0009294: DNA mediated transformation5.89E-03
90GO:0009686: gibberellin biosynthetic process5.89E-03
91GO:0006810: transport5.90E-03
92GO:0051028: mRNA transport6.60E-03
93GO:0008284: positive regulation of cell proliferation6.60E-03
94GO:0009789: positive regulation of abscisic acid-activated signaling pathway6.60E-03
95GO:0010501: RNA secondary structure unwinding6.97E-03
96GO:0000413: protein peptidyl-prolyl isomerization6.97E-03
97GO:0010182: sugar mediated signaling pathway7.34E-03
98GO:0006342: chromatin silencing7.34E-03
99GO:0045489: pectin biosynthetic process7.34E-03
100GO:0006623: protein targeting to vacuole8.10E-03
101GO:0006635: fatty acid beta-oxidation8.50E-03
102GO:0048510: regulation of timing of transition from vegetative to reproductive phase8.50E-03
103GO:0016032: viral process8.90E-03
104GO:0071281: cellular response to iron ion9.30E-03
105GO:0009639: response to red or far red light9.72E-03
106GO:0009860: pollen tube growth1.00E-02
107GO:0006904: vesicle docking involved in exocytosis1.01E-02
108GO:0009737: response to abscisic acid1.04E-02
109GO:0051607: defense response to virus1.06E-02
110GO:0016579: protein deubiquitination1.06E-02
111GO:0001666: response to hypoxia1.10E-02
112GO:0009627: systemic acquired resistance1.19E-02
113GO:0016192: vesicle-mediated transport1.22E-02
114GO:0048573: photoperiodism, flowering1.23E-02
115GO:0006888: ER to Golgi vesicle-mediated transport1.23E-02
116GO:0046777: protein autophosphorylation1.24E-02
117GO:0016049: cell growth1.28E-02
118GO:0048767: root hair elongation1.37E-02
119GO:0009910: negative regulation of flower development1.47E-02
120GO:0009631: cold acclimation1.47E-02
121GO:0045087: innate immune response1.57E-02
122GO:0016051: carbohydrate biosynthetic process1.57E-02
123GO:0030001: metal ion transport1.72E-02
124GO:0006839: mitochondrial transport1.72E-02
125GO:0009744: response to sucrose1.88E-02
126GO:0042546: cell wall biogenesis1.93E-02
127GO:0000209: protein polyubiquitination1.93E-02
128GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process2.15E-02
129GO:0009585: red, far-red light phototransduction2.32E-02
130GO:0009909: regulation of flower development2.50E-02
131GO:0009626: plant-type hypersensitive response2.74E-02
132GO:0009555: pollen development3.04E-02
133GO:0000398: mRNA splicing, via spliceosome3.30E-02
134GO:0007275: multicellular organism development3.43E-02
135GO:0045893: positive regulation of transcription, DNA-templated3.48E-02
136GO:0009845: seed germination3.70E-02
137GO:0009790: embryo development3.91E-02
138GO:0006457: protein folding3.92E-02
139GO:0006633: fatty acid biosynthetic process4.12E-02
140GO:0016036: cellular response to phosphate starvation4.19E-02
141GO:0040008: regulation of growth4.26E-02
142GO:0010228: vegetative to reproductive phase transition of meristem4.55E-02
143GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process4.77E-02
144GO:0006470: protein dephosphorylation4.84E-02
RankGO TermAdjusted P value
1GO:0017168: 5-oxoprolinase (ATP-hydrolyzing) activity0.00E+00
2GO:0003729: mRNA binding6.55E-06
3GO:0003730: mRNA 3'-UTR binding2.44E-05
4GO:0015228: coenzyme A transmembrane transporter activity2.00E-04
5GO:0003988: acetyl-CoA C-acyltransferase activity2.00E-04
6GO:0019829: cation-transporting ATPase activity3.35E-04
7GO:0030276: clathrin binding5.10E-04
8GO:0016004: phospholipase activator activity6.44E-04
9GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity6.44E-04
10GO:0005086: ARF guanyl-nucleotide exchange factor activity6.44E-04
11GO:0080122: AMP transmembrane transporter activity8.14E-04
12GO:0017137: Rab GTPase binding8.14E-04
13GO:0015217: ADP transmembrane transporter activity1.18E-03
14GO:0005096: GTPase activator activity1.20E-03
15GO:0008142: oxysterol binding1.83E-03
16GO:0003724: RNA helicase activity1.83E-03
17GO:0001104: RNA polymerase II transcription cofactor activity1.83E-03
18GO:0005198: structural molecule activity2.07E-03
19GO:0005515: protein binding2.71E-03
20GO:0005089: Rho guanyl-nucleotide exchange factor activity2.82E-03
21GO:0005388: calcium-transporting ATPase activity3.37E-03
22GO:0003779: actin binding3.39E-03
23GO:0008026: ATP-dependent helicase activity3.71E-03
24GO:0004386: helicase activity3.81E-03
25GO:0003712: transcription cofactor activity3.95E-03
26GO:0005385: zinc ion transmembrane transporter activity4.57E-03
27GO:0043424: protein histidine kinase binding4.89E-03
28GO:0036459: thiol-dependent ubiquitinyl hydrolase activity5.22E-03
29GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity5.55E-03
30GO:0004402: histone acetyltransferase activity6.97E-03
31GO:0046873: metal ion transmembrane transporter activity7.34E-03
32GO:0016853: isomerase activity7.72E-03
33GO:0004843: thiol-dependent ubiquitin-specific protease activity8.50E-03
34GO:0051015: actin filament binding9.30E-03
35GO:0003684: damaged DNA binding9.72E-03
36GO:0004004: ATP-dependent RNA helicase activity1.23E-02
37GO:0003697: single-stranded DNA binding1.57E-02
38GO:0000149: SNARE binding1.67E-02
39GO:0004712: protein serine/threonine/tyrosine kinase activity1.67E-02
40GO:0035091: phosphatidylinositol binding1.99E-02
41GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.10E-02
42GO:0008289: lipid binding2.38E-02
43GO:0003723: RNA binding2.52E-02
44GO:0000166: nucleotide binding3.04E-02
45GO:0005525: GTP binding4.96E-02
RankGO TermAdjusted P value
1GO:0071942: XPC complex0.00E+00
2GO:0000111: nucleotide-excision repair factor 2 complex0.00E+00
3GO:0008305: integrin complex0.00E+00
4GO:0071561: nucleus-vacuole junction0.00E+00
5GO:0005681: spliceosomal complex2.03E-05
6GO:0000145: exocyst3.35E-05
7GO:0005794: Golgi apparatus7.20E-05
8GO:0034271: phosphatidylinositol 3-kinase complex, class III, type I8.43E-05
9GO:0034272: phosphatidylinositol 3-kinase complex, class III, type II8.43E-05
10GO:0005829: cytosol8.51E-05
11GO:0005856: cytoskeleton1.95E-04
12GO:0030897: HOPS complex2.00E-04
13GO:0000139: Golgi membrane2.60E-04
14GO:0005905: clathrin-coated pit3.11E-04
15GO:0030124: AP-4 adaptor complex3.35E-04
16GO:0030117: membrane coat6.44E-04
17GO:0030663: COPI-coated vesicle membrane6.44E-04
18GO:0005783: endoplasmic reticulum6.59E-04
19GO:0030126: COPI vesicle coat8.14E-04
20GO:0000932: P-body8.91E-04
21GO:0070847: core mediator complex9.94E-04
22GO:0030127: COPII vesicle coat9.94E-04
23GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane1.39E-03
24GO:0030131: clathrin adaptor complex1.60E-03
25GO:0009514: glyoxysome1.83E-03
26GO:0010494: cytoplasmic stress granule2.06E-03
27GO:0015030: Cajal body2.30E-03
28GO:0030125: clathrin vesicle coat2.56E-03
29GO:0005765: lysosomal membrane2.82E-03
30GO:0005884: actin filament2.82E-03
31GO:0019013: viral nucleocapsid3.37E-03
32GO:0043234: protein complex4.26E-03
33GO:0009524: phragmoplast4.60E-03
34GO:0005789: endoplasmic reticulum membrane6.26E-03
35GO:0005770: late endosome7.34E-03
36GO:0009506: plasmodesma8.58E-03
37GO:0016592: mediator complex8.90E-03
38GO:0080008: Cul4-RING E3 ubiquitin ligase complex1.02E-02
39GO:0005802: trans-Golgi network1.09E-02
40GO:0030529: intracellular ribonucleoprotein complex1.10E-02
41GO:0005634: nucleus1.16E-02
42GO:0005622: intracellular1.25E-02
43GO:0005768: endosome1.29E-02
44GO:0005643: nuclear pore1.33E-02
45GO:0015934: large ribosomal subunit1.47E-02
46GO:0031902: late endosome membrane1.77E-02
47GO:0005774: vacuolar membrane2.15E-02
48GO:0005730: nucleolus2.85E-02
49GO:0012505: endomembrane system2.92E-02
50GO:0005623: cell3.57E-02
51GO:0005737: cytoplasm4.34E-02
52GO:0009705: plant-type vacuole membrane4.40E-02
Gene type



Gene DE type