Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G45170

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090042: tubulin deacetylation0.00E+00
2GO:0006399: tRNA metabolic process0.00E+00
3GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
4GO:0061635: regulation of protein complex stability0.00E+00
5GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
6GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
7GO:0009773: photosynthetic electron transport in photosystem I6.11E-13
8GO:0015979: photosynthesis5.24E-12
9GO:0030388: fructose 1,6-bisphosphate metabolic process4.08E-06
10GO:0010196: nonphotochemical quenching5.18E-06
11GO:0090391: granum assembly1.46E-05
12GO:0006000: fructose metabolic process1.46E-05
13GO:0042335: cuticle development1.52E-05
14GO:0009735: response to cytokinin5.08E-05
15GO:0006094: gluconeogenesis5.43E-05
16GO:0010027: thylakoid membrane organization5.72E-05
17GO:0009658: chloroplast organization1.05E-04
18GO:0006400: tRNA modification2.39E-04
19GO:1902025: nitrate import2.99E-04
20GO:1904966: positive regulation of vitamin E biosynthetic process2.99E-04
21GO:1904964: positive regulation of phytol biosynthetic process2.99E-04
22GO:0080051: cutin transport2.99E-04
23GO:0090548: response to nitrate starvation2.99E-04
24GO:0071588: hydrogen peroxide mediated signaling pathway2.99E-04
25GO:0032544: plastid translation3.71E-04
26GO:0006002: fructose 6-phosphate metabolic process3.71E-04
27GO:0071482: cellular response to light stimulus3.71E-04
28GO:0010115: regulation of abscisic acid biosynthetic process6.55E-04
29GO:0034755: iron ion transmembrane transport6.55E-04
30GO:0010270: photosystem II oxygen evolving complex assembly6.55E-04
31GO:1902326: positive regulation of chlorophyll biosynthetic process6.55E-04
32GO:0015908: fatty acid transport6.55E-04
33GO:0043085: positive regulation of catalytic activity7.11E-04
34GO:0009750: response to fructose7.11E-04
35GO:0005983: starch catabolic process8.12E-04
36GO:0018298: protein-chromophore linkage8.71E-04
37GO:0005986: sucrose biosynthetic process9.19E-04
38GO:0010207: photosystem II assembly1.03E-03
39GO:0010581: regulation of starch biosynthetic process1.06E-03
40GO:0045454: cell redox homeostasis1.19E-03
41GO:0006810: transport1.20E-03
42GO:1901332: negative regulation of lateral root development1.52E-03
43GO:0016556: mRNA modification1.52E-03
44GO:2001141: regulation of RNA biosynthetic process1.52E-03
45GO:0006020: inositol metabolic process1.52E-03
46GO:0009152: purine ribonucleotide biosynthetic process1.52E-03
47GO:0046653: tetrahydrofolate metabolic process1.52E-03
48GO:0009800: cinnamic acid biosynthetic process1.52E-03
49GO:0009768: photosynthesis, light harvesting in photosystem I1.56E-03
50GO:0006021: inositol biosynthetic process2.04E-03
51GO:0010021: amylopectin biosynthetic process2.04E-03
52GO:0010222: stem vascular tissue pattern formation2.04E-03
53GO:0045727: positive regulation of translation2.04E-03
54GO:0015994: chlorophyll metabolic process2.04E-03
55GO:0008152: metabolic process2.05E-03
56GO:0006564: L-serine biosynthetic process2.61E-03
57GO:0031365: N-terminal protein amino acid modification2.61E-03
58GO:0006461: protein complex assembly2.61E-03
59GO:0080110: sporopollenin biosynthetic process2.61E-03
60GO:0042254: ribosome biogenesis2.90E-03
61GO:0048544: recognition of pollen3.02E-03
62GO:0006559: L-phenylalanine catabolic process3.22E-03
63GO:0046855: inositol phosphate dephosphorylation3.22E-03
64GO:0006561: proline biosynthetic process3.22E-03
65GO:0042549: photosystem II stabilization3.22E-03
66GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.22E-03
67GO:0000470: maturation of LSU-rRNA3.22E-03
68GO:0016554: cytidine to uridine editing3.22E-03
69GO:0009913: epidermal cell differentiation3.22E-03
70GO:0006828: manganese ion transport3.22E-03
71GO:0009854: oxidative photosynthetic carbon pathway3.87E-03
72GO:0010019: chloroplast-nucleus signaling pathway3.87E-03
73GO:0009645: response to low light intensity stimulus4.57E-03
74GO:0009395: phospholipid catabolic process4.57E-03
75GO:0009772: photosynthetic electron transport in photosystem II4.57E-03
76GO:0009704: de-etiolation5.30E-03
77GO:0048564: photosystem I assembly5.30E-03
78GO:0008610: lipid biosynthetic process5.30E-03
79GO:0009819: drought recovery5.30E-03
80GO:0042744: hydrogen peroxide catabolic process5.77E-03
81GO:0015995: chlorophyll biosynthetic process5.89E-03
82GO:0006869: lipid transport5.92E-03
83GO:0009657: plastid organization6.08E-03
84GO:0017004: cytochrome complex assembly6.08E-03
85GO:0019430: removal of superoxide radicals6.08E-03
86GO:0034765: regulation of ion transmembrane transport6.89E-03
87GO:0000373: Group II intron splicing6.89E-03
88GO:0006098: pentose-phosphate shunt6.89E-03
89GO:0090305: nucleic acid phosphodiester bond hydrolysis6.89E-03
90GO:0006779: porphyrin-containing compound biosynthetic process7.74E-03
91GO:1900865: chloroplast RNA modification7.74E-03
92GO:0010380: regulation of chlorophyll biosynthetic process7.74E-03
93GO:0009637: response to blue light8.28E-03
94GO:0009853: photorespiration8.28E-03
95GO:0009688: abscisic acid biosynthetic process8.62E-03
96GO:0006782: protoporphyrinogen IX biosynthetic process8.62E-03
97GO:0034599: cellular response to oxidative stress8.66E-03
98GO:0009409: response to cold9.31E-03
99GO:0006415: translational termination9.55E-03
100GO:0006879: cellular iron ion homeostasis9.55E-03
101GO:0006352: DNA-templated transcription, initiation9.55E-03
102GO:0000038: very long-chain fatty acid metabolic process9.55E-03
103GO:0006816: calcium ion transport9.55E-03
104GO:0016024: CDP-diacylglycerol biosynthetic process1.05E-02
105GO:0006790: sulfur compound metabolic process1.05E-02
106GO:0010114: response to red light1.07E-02
107GO:0010628: positive regulation of gene expression1.15E-02
108GO:0010588: cotyledon vascular tissue pattern formation1.15E-02
109GO:0019253: reductive pentose-phosphate cycle1.25E-02
110GO:0006855: drug transmembrane transport1.25E-02
111GO:0010143: cutin biosynthetic process1.25E-02
112GO:0010020: chloroplast fission1.25E-02
113GO:0005985: sucrose metabolic process1.36E-02
114GO:0046854: phosphatidylinositol phosphorylation1.36E-02
115GO:0006364: rRNA processing1.45E-02
116GO:0019762: glucosinolate catabolic process1.47E-02
117GO:0000027: ribosomal large subunit assembly1.58E-02
118GO:0007017: microtubule-based process1.69E-02
119GO:0009695: jasmonic acid biosynthetic process1.69E-02
120GO:0019953: sexual reproduction1.69E-02
121GO:0016575: histone deacetylation1.69E-02
122GO:0061077: chaperone-mediated protein folding1.81E-02
123GO:0009269: response to desiccation1.81E-02
124GO:0031408: oxylipin biosynthetic process1.81E-02
125GO:0030245: cellulose catabolic process1.93E-02
126GO:0016226: iron-sulfur cluster assembly1.93E-02
127GO:0010584: pollen exine formation2.18E-02
128GO:0009737: response to abscisic acid2.22E-02
129GO:0042391: regulation of membrane potential2.44E-02
130GO:0000413: protein peptidyl-prolyl isomerization2.44E-02
131GO:0006662: glycerol ether metabolic process2.57E-02
132GO:0010182: sugar mediated signaling pathway2.57E-02
133GO:0032259: methylation2.62E-02
134GO:0016042: lipid catabolic process2.66E-02
135GO:0015986: ATP synthesis coupled proton transport2.71E-02
136GO:0019252: starch biosynthetic process2.85E-02
137GO:0000302: response to reactive oxygen species2.99E-02
138GO:0019761: glucosinolate biosynthetic process3.13E-02
139GO:0071805: potassium ion transmembrane transport3.58E-02
140GO:0009451: RNA modification3.64E-02
141GO:0001666: response to hypoxia3.88E-02
142GO:0042128: nitrate assimilation4.20E-02
143GO:0016311: dephosphorylation4.52E-02
144GO:0042742: defense response to bacterium4.73E-02
145GO:0010311: lateral root formation4.85E-02
146GO:0000160: phosphorelay signal transduction system4.85E-02
RankGO TermAdjusted P value
1GO:0042903: tubulin deacetylase activity0.00E+00
2GO:0008887: glycerate kinase activity0.00E+00
3GO:0043014: alpha-tubulin binding0.00E+00
4GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
5GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
6GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
7GO:0010301: xanthoxin dehydrogenase activity0.00E+00
8GO:0051721: protein phosphatase 2A binding0.00E+00
9GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
10GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
11GO:0003755: peptidyl-prolyl cis-trans isomerase activity7.51E-08
12GO:0005528: FK506 binding7.97E-08
13GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity4.08E-06
14GO:0019843: rRNA binding1.41E-04
15GO:0004723: calcium-dependent protein serine/threonine phosphatase activity1.83E-04
16GO:0051920: peroxiredoxin activity1.83E-04
17GO:0004321: fatty-acyl-CoA synthase activity2.99E-04
18GO:0019203: carbohydrate phosphatase activity2.99E-04
19GO:0005080: protein kinase C binding2.99E-04
20GO:0015245: fatty acid transporter activity2.99E-04
21GO:0050139: nicotinate-N-glucosyltransferase activity2.99E-04
22GO:0030794: (S)-coclaurine-N-methyltransferase activity2.99E-04
23GO:0050308: sugar-phosphatase activity2.99E-04
24GO:0016209: antioxidant activity3.02E-04
25GO:0008047: enzyme activator activity6.16E-04
26GO:0047746: chlorophyllase activity6.55E-04
27GO:0004617: phosphoglycerate dehydrogenase activity6.55E-04
28GO:0052832: inositol monophosphate 3-phosphatase activity6.55E-04
29GO:0033201: alpha-1,4-glucan synthase activity6.55E-04
30GO:0008934: inositol monophosphate 1-phosphatase activity6.55E-04
31GO:0052833: inositol monophosphate 4-phosphatase activity6.55E-04
32GO:0016630: protochlorophyllide reductase activity6.55E-04
33GO:0016168: chlorophyll binding6.68E-04
34GO:0046872: metal ion binding6.82E-04
35GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.06E-03
36GO:0008864: formyltetrahydrofolate deformylase activity1.06E-03
37GO:0004373: glycogen (starch) synthase activity1.06E-03
38GO:0045548: phenylalanine ammonia-lyase activity1.06E-03
39GO:0031409: pigment binding1.28E-03
40GO:0005509: calcium ion binding1.33E-03
41GO:0048487: beta-tubulin binding1.52E-03
42GO:0016149: translation release factor activity, codon specific1.52E-03
43GO:0009055: electron carrier activity1.95E-03
44GO:0009011: starch synthase activity2.04E-03
45GO:0043495: protein anchor2.04E-03
46GO:0042277: peptide binding2.04E-03
47GO:0004659: prenyltransferase activity2.04E-03
48GO:0001053: plastid sigma factor activity2.04E-03
49GO:0005319: lipid transporter activity2.04E-03
50GO:0004045: aminoacyl-tRNA hydrolase activity2.04E-03
51GO:0016987: sigma factor activity2.04E-03
52GO:1990137: plant seed peroxidase activity2.04E-03
53GO:0003959: NADPH dehydrogenase activity2.61E-03
54GO:0016773: phosphotransferase activity, alcohol group as acceptor2.61E-03
55GO:0004601: peroxidase activity2.82E-03
56GO:0016788: hydrolase activity, acting on ester bonds2.90E-03
57GO:0050662: coenzyme binding3.02E-03
58GO:0004791: thioredoxin-disulfide reductase activity3.02E-03
59GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.22E-03
60GO:0016688: L-ascorbate peroxidase activity3.22E-03
61GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.22E-03
62GO:2001070: starch binding3.22E-03
63GO:0004332: fructose-bisphosphate aldolase activity3.22E-03
64GO:0004130: cytochrome-c peroxidase activity3.22E-03
65GO:0016746: transferase activity, transferring acyl groups3.82E-03
66GO:0005242: inward rectifier potassium channel activity3.87E-03
67GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.87E-03
68GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.94E-03
69GO:0019899: enzyme binding4.57E-03
70GO:0008235: metalloexopeptidase activity4.57E-03
71GO:0016597: amino acid binding4.72E-03
72GO:0003723: RNA binding5.21E-03
73GO:0004033: aldo-keto reductase (NADP) activity5.30E-03
74GO:0043022: ribosome binding5.30E-03
75GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)6.08E-03
76GO:0008138: protein tyrosine/serine/threonine phosphatase activity6.89E-03
77GO:0003747: translation release factor activity6.89E-03
78GO:0016207: 4-coumarate-CoA ligase activity6.89E-03
79GO:0005384: manganese ion transmembrane transporter activity7.74E-03
80GO:0005381: iron ion transmembrane transporter activity7.74E-03
81GO:0004519: endonuclease activity8.04E-03
82GO:0030234: enzyme regulator activity8.62E-03
83GO:0004177: aminopeptidase activity9.55E-03
84GO:0015386: potassium:proton antiporter activity9.55E-03
85GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.00E-02
86GO:0042802: identical protein binding1.00E-02
87GO:0004022: alcohol dehydrogenase (NAD) activity1.15E-02
88GO:0015095: magnesium ion transmembrane transporter activity1.15E-02
89GO:0004565: beta-galactosidase activity1.15E-02
90GO:0051537: 2 iron, 2 sulfur cluster binding1.16E-02
91GO:0008168: methyltransferase activity1.23E-02
92GO:0008266: poly(U) RNA binding1.25E-02
93GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.47E-02
94GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.47E-02
95GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.47E-02
96GO:0051536: iron-sulfur cluster binding1.58E-02
97GO:0004407: histone deacetylase activity1.58E-02
98GO:0015079: potassium ion transmembrane transporter activity1.69E-02
99GO:0003824: catalytic activity1.89E-02
100GO:0052689: carboxylic ester hydrolase activity1.92E-02
101GO:0008810: cellulase activity2.05E-02
102GO:0022891: substrate-specific transmembrane transporter activity2.05E-02
103GO:0047134: protein-disulfide reductase activity2.31E-02
104GO:0005249: voltage-gated potassium channel activity2.44E-02
105GO:0030551: cyclic nucleotide binding2.44E-02
106GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.57E-02
107GO:0016491: oxidoreductase activity2.57E-02
108GO:0030246: carbohydrate binding2.62E-02
109GO:0004518: nuclease activity3.13E-02
110GO:0000156: phosphorelay response regulator activity3.28E-02
111GO:0016791: phosphatase activity3.42E-02
112GO:0008237: metallopeptidase activity3.58E-02
113GO:0005200: structural constituent of cytoskeleton3.58E-02
114GO:0051213: dioxygenase activity3.88E-02
115GO:0008289: lipid binding4.15E-02
116GO:0009931: calcium-dependent protein serine/threonine kinase activity4.20E-02
117GO:0004721: phosphoprotein phosphatase activity4.36E-02
118GO:0004683: calmodulin-dependent protein kinase activity4.36E-02
119GO:0015238: drug transmembrane transporter activity4.85E-02
RankGO TermAdjusted P value
1GO:0009515: granal stacked thylakoid0.00E+00
2GO:0009575: chromoplast stroma0.00E+00
3GO:0009507: chloroplast4.24E-53
4GO:0009535: chloroplast thylakoid membrane1.15E-34
5GO:0009534: chloroplast thylakoid4.15E-20
6GO:0009570: chloroplast stroma6.17E-20
7GO:0009543: chloroplast thylakoid lumen2.58E-18
8GO:0009579: thylakoid1.51E-17
9GO:0009941: chloroplast envelope7.51E-15
10GO:0031977: thylakoid lumen6.84E-13
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.25E-07
12GO:0009654: photosystem II oxygen evolving complex4.92E-06
13GO:0019898: extrinsic component of membrane2.40E-05
14GO:0031969: chloroplast membrane2.44E-05
15GO:0030095: chloroplast photosystem II6.59E-05
16GO:0010287: plastoglobule1.26E-04
17GO:0042651: thylakoid membrane1.27E-04
18GO:0009533: chloroplast stromal thylakoid2.39E-04
19GO:0009782: photosystem I antenna complex2.99E-04
20GO:0043190: ATP-binding cassette (ABC) transporter complex2.99E-04
21GO:0009523: photosystem II3.54E-04
22GO:0046658: anchored component of plasma membrane4.51E-04
23GO:0010319: stromule5.37E-04
24GO:0009897: external side of plasma membrane1.06E-03
25GO:0030076: light-harvesting complex1.15E-03
26GO:0015630: microtubule cytoskeleton1.52E-03
27GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.22E-03
28GO:0030529: intracellular ribonucleoprotein complex5.00E-03
29GO:0009501: amyloplast5.30E-03
30GO:0005811: lipid particle6.08E-03
31GO:0016020: membrane6.66E-03
32GO:0043231: intracellular membrane-bounded organelle8.21E-03
33GO:0048046: apoplast1.02E-02
34GO:0005874: microtubule1.62E-02
35GO:0005840: ribosome1.75E-02
36GO:0009532: plastid stroma1.81E-02
37GO:0015935: small ribosomal subunit1.81E-02
38GO:0009706: chloroplast inner membrane2.06E-02
39GO:0009522: photosystem I2.71E-02
40GO:0031225: anchored component of membrane3.25E-02
41GO:0009707: chloroplast outer membrane4.69E-02
Gene type



Gene DE type