GO Enrichment Analysis of Co-expressed Genes with
AT5G45040
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 2 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 3 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 4 | GO:0015979: photosynthesis | 2.88E-06 |
| 5 | GO:0006400: tRNA modification | 3.77E-05 |
| 6 | GO:0071482: cellular response to light stimulus | 6.27E-05 |
| 7 | GO:1904964: positive regulation of phytol biosynthetic process | 9.14E-05 |
| 8 | GO:0042371: vitamin K biosynthetic process | 9.14E-05 |
| 9 | GO:0006427: histidyl-tRNA aminoacylation | 9.14E-05 |
| 10 | GO:1904966: positive regulation of vitamin E biosynthetic process | 9.14E-05 |
| 11 | GO:0006352: DNA-templated transcription, initiation | 1.33E-04 |
| 12 | GO:0010207: photosystem II assembly | 2.02E-04 |
| 13 | GO:0009658: chloroplast organization | 2.16E-04 |
| 14 | GO:0006568: tryptophan metabolic process | 2.16E-04 |
| 15 | GO:0010024: phytochromobilin biosynthetic process | 2.16E-04 |
| 16 | GO:0010270: photosystem II oxygen evolving complex assembly | 2.16E-04 |
| 17 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.16E-04 |
| 18 | GO:0034755: iron ion transmembrane transport | 2.16E-04 |
| 19 | GO:0010115: regulation of abscisic acid biosynthetic process | 2.16E-04 |
| 20 | GO:0006418: tRNA aminoacylation for protein translation | 3.15E-04 |
| 21 | GO:0006788: heme oxidation | 3.61E-04 |
| 22 | GO:0006954: inflammatory response | 3.61E-04 |
| 23 | GO:0006433: prolyl-tRNA aminoacylation | 3.61E-04 |
| 24 | GO:0006457: protein folding | 3.90E-04 |
| 25 | GO:0043572: plastid fission | 5.20E-04 |
| 26 | GO:2001141: regulation of RNA biosynthetic process | 5.20E-04 |
| 27 | GO:0009152: purine ribonucleotide biosynthetic process | 5.20E-04 |
| 28 | GO:0046653: tetrahydrofolate metabolic process | 5.20E-04 |
| 29 | GO:0006424: glutamyl-tRNA aminoacylation | 5.20E-04 |
| 30 | GO:0010109: regulation of photosynthesis | 6.90E-04 |
| 31 | GO:0015994: chlorophyll metabolic process | 6.90E-04 |
| 32 | GO:0071483: cellular response to blue light | 6.90E-04 |
| 33 | GO:0031365: N-terminal protein amino acid modification | 8.73E-04 |
| 34 | GO:0080110: sporopollenin biosynthetic process | 8.73E-04 |
| 35 | GO:0032543: mitochondrial translation | 8.73E-04 |
| 36 | GO:0006564: L-serine biosynthetic process | 8.73E-04 |
| 37 | GO:0006561: proline biosynthetic process | 1.07E-03 |
| 38 | GO:0048759: xylem vessel member cell differentiation | 1.07E-03 |
| 39 | GO:0042549: photosystem II stabilization | 1.07E-03 |
| 40 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.07E-03 |
| 41 | GO:0016554: cytidine to uridine editing | 1.07E-03 |
| 42 | GO:0006828: manganese ion transport | 1.07E-03 |
| 43 | GO:0010190: cytochrome b6f complex assembly | 1.07E-03 |
| 44 | GO:0006596: polyamine biosynthetic process | 1.07E-03 |
| 45 | GO:0009854: oxidative photosynthetic carbon pathway | 1.27E-03 |
| 46 | GO:0048481: plant ovule development | 1.27E-03 |
| 47 | GO:0018298: protein-chromophore linkage | 1.27E-03 |
| 48 | GO:0042254: ribosome biogenesis | 1.59E-03 |
| 49 | GO:0009637: response to blue light | 1.60E-03 |
| 50 | GO:0009853: photorespiration | 1.60E-03 |
| 51 | GO:0048564: photosystem I assembly | 1.72E-03 |
| 52 | GO:0009819: drought recovery | 1.72E-03 |
| 53 | GO:0017004: cytochrome complex assembly | 1.96E-03 |
| 54 | GO:0009657: plastid organization | 1.96E-03 |
| 55 | GO:0010114: response to red light | 2.05E-03 |
| 56 | GO:0090305: nucleic acid phosphodiester bond hydrolysis | 2.21E-03 |
| 57 | GO:1900865: chloroplast RNA modification | 2.48E-03 |
| 58 | GO:0009688: abscisic acid biosynthetic process | 2.75E-03 |
| 59 | GO:0045036: protein targeting to chloroplast | 2.75E-03 |
| 60 | GO:0009750: response to fructose | 3.03E-03 |
| 61 | GO:0006816: calcium ion transport | 3.03E-03 |
| 62 | GO:0009773: photosynthetic electron transport in photosystem I | 3.03E-03 |
| 63 | GO:0019684: photosynthesis, light reaction | 3.03E-03 |
| 64 | GO:0009089: lysine biosynthetic process via diaminopimelate | 3.03E-03 |
| 65 | GO:0009073: aromatic amino acid family biosynthetic process | 3.03E-03 |
| 66 | GO:0043085: positive regulation of catalytic activity | 3.03E-03 |
| 67 | GO:0006879: cellular iron ion homeostasis | 3.03E-03 |
| 68 | GO:0010020: chloroplast fission | 3.93E-03 |
| 69 | GO:0090351: seedling development | 4.26E-03 |
| 70 | GO:0006412: translation | 4.80E-03 |
| 71 | GO:0000027: ribosomal large subunit assembly | 4.92E-03 |
| 72 | GO:0009768: photosynthesis, light harvesting in photosystem I | 5.27E-03 |
| 73 | GO:0016226: iron-sulfur cluster assembly | 5.98E-03 |
| 74 | GO:0010584: pollen exine formation | 6.73E-03 |
| 75 | GO:0000413: protein peptidyl-prolyl isomerization | 7.51E-03 |
| 76 | GO:0010087: phloem or xylem histogenesis | 7.51E-03 |
| 77 | GO:0010182: sugar mediated signaling pathway | 7.91E-03 |
| 78 | GO:0006662: glycerol ether metabolic process | 7.91E-03 |
| 79 | GO:0016032: viral process | 9.60E-03 |
| 80 | GO:0010027: thylakoid membrane organization | 1.19E-02 |
| 81 | GO:0015995: chlorophyll biosynthetic process | 1.33E-02 |
| 82 | GO:0016311: dephosphorylation | 1.38E-02 |
| 83 | GO:0045454: cell redox homeostasis | 1.54E-02 |
| 84 | GO:0010218: response to far red light | 1.54E-02 |
| 85 | GO:0034599: cellular response to oxidative stress | 1.75E-02 |
| 86 | GO:0009408: response to heat | 1.91E-02 |
| 87 | GO:0009926: auxin polar transport | 2.03E-02 |
| 88 | GO:0051707: response to other organism | 2.03E-02 |
| 89 | GO:0006508: proteolysis | 2.11E-02 |
| 90 | GO:0042538: hyperosmotic salinity response | 2.38E-02 |
| 91 | GO:0051603: proteolysis involved in cellular protein catabolic process | 2.57E-02 |
| 92 | GO:0055114: oxidation-reduction process | 2.70E-02 |
| 93 | GO:0048316: seed development | 2.89E-02 |
| 94 | GO:0009553: embryo sac development | 3.16E-02 |
| 95 | GO:0009058: biosynthetic process | 3.93E-02 |
| 96 | GO:0009737: response to abscisic acid | 4.33E-02 |
| 97 | GO:0009793: embryo development ending in seed dormancy | 4.79E-02 |
| 98 | GO:0009451: RNA modification | 4.83E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 2 | GO:0010301: xanthoxin dehydrogenase activity | 0.00E+00 |
| 3 | GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity | 0.00E+00 |
| 4 | GO:0010487: thermospermine synthase activity | 0.00E+00 |
| 5 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 6 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 7 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.15E-07 |
| 8 | GO:0019843: rRNA binding | 2.83E-06 |
| 9 | GO:0001053: plastid sigma factor activity | 7.70E-06 |
| 10 | GO:0016987: sigma factor activity | 7.70E-06 |
| 11 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 9.14E-05 |
| 12 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 9.14E-05 |
| 13 | GO:0004821: histidine-tRNA ligase activity | 9.14E-05 |
| 14 | GO:0016768: spermine synthase activity | 9.14E-05 |
| 15 | GO:0047746: chlorophyllase activity | 2.16E-04 |
| 16 | GO:0004617: phosphoglycerate dehydrogenase activity | 2.16E-04 |
| 17 | GO:0016630: protochlorophyllide reductase activity | 2.16E-04 |
| 18 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 2.16E-04 |
| 19 | GO:0005528: FK506 binding | 2.85E-04 |
| 20 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 3.61E-04 |
| 21 | GO:0008864: formyltetrahydrofolate deformylase activity | 3.61E-04 |
| 22 | GO:0004827: proline-tRNA ligase activity | 3.61E-04 |
| 23 | GO:0002161: aminoacyl-tRNA editing activity | 3.61E-04 |
| 24 | GO:0004812: aminoacyl-tRNA ligase activity | 4.87E-04 |
| 25 | GO:0001872: (1->3)-beta-D-glucan binding | 5.20E-04 |
| 26 | GO:0004045: aminoacyl-tRNA hydrolase activity | 6.90E-04 |
| 27 | GO:1990137: plant seed peroxidase activity | 6.90E-04 |
| 28 | GO:0043495: protein anchor | 6.90E-04 |
| 29 | GO:0004392: heme oxygenase (decyclizing) activity | 6.90E-04 |
| 30 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 8.73E-04 |
| 31 | GO:0003959: NADPH dehydrogenase activity | 8.73E-04 |
| 32 | GO:0016168: chlorophyll binding | 1.04E-03 |
| 33 | GO:0051920: peroxiredoxin activity | 1.27E-03 |
| 34 | GO:0008235: metalloexopeptidase activity | 1.49E-03 |
| 35 | GO:0019899: enzyme binding | 1.49E-03 |
| 36 | GO:0016209: antioxidant activity | 1.72E-03 |
| 37 | GO:0004033: aldo-keto reductase (NADP) activity | 1.72E-03 |
| 38 | GO:0005381: iron ion transmembrane transporter activity | 2.48E-03 |
| 39 | GO:0005384: manganese ion transmembrane transporter activity | 2.48E-03 |
| 40 | GO:0008047: enzyme activator activity | 2.75E-03 |
| 41 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.75E-03 |
| 42 | GO:0003735: structural constituent of ribosome | 2.87E-03 |
| 43 | GO:0004177: aminopeptidase activity | 3.03E-03 |
| 44 | GO:0000049: tRNA binding | 3.32E-03 |
| 45 | GO:0015095: magnesium ion transmembrane transporter activity | 3.63E-03 |
| 46 | GO:0031072: heat shock protein binding | 3.63E-03 |
| 47 | GO:0004022: alcohol dehydrogenase (NAD) activity | 3.63E-03 |
| 48 | GO:0051082: unfolded protein binding | 3.89E-03 |
| 49 | GO:0031409: pigment binding | 4.58E-03 |
| 50 | GO:0051536: iron-sulfur cluster binding | 4.92E-03 |
| 51 | GO:0004176: ATP-dependent peptidase activity | 5.62E-03 |
| 52 | GO:0016491: oxidoreductase activity | 5.90E-03 |
| 53 | GO:0022891: substrate-specific transmembrane transporter activity | 6.35E-03 |
| 54 | GO:0047134: protein-disulfide reductase activity | 7.11E-03 |
| 55 | GO:0046872: metal ion binding | 7.59E-03 |
| 56 | GO:0008080: N-acetyltransferase activity | 7.91E-03 |
| 57 | GO:0004791: thioredoxin-disulfide reductase activity | 8.32E-03 |
| 58 | GO:0050662: coenzyme binding | 8.32E-03 |
| 59 | GO:0004518: nuclease activity | 9.60E-03 |
| 60 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.00E-02 |
| 61 | GO:0003723: RNA binding | 1.06E-02 |
| 62 | GO:0008237: metallopeptidase activity | 1.09E-02 |
| 63 | GO:0016597: amino acid binding | 1.14E-02 |
| 64 | GO:0030247: polysaccharide binding | 1.33E-02 |
| 65 | GO:0005509: calcium ion binding | 1.52E-02 |
| 66 | GO:0004222: metalloendopeptidase activity | 1.54E-02 |
| 67 | GO:0003993: acid phosphatase activity | 1.75E-02 |
| 68 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.86E-02 |
| 69 | GO:0004185: serine-type carboxypeptidase activity | 2.03E-02 |
| 70 | GO:0004519: endonuclease activity | 2.07E-02 |
| 71 | GO:0051287: NAD binding | 2.32E-02 |
| 72 | GO:0003729: mRNA binding | 2.78E-02 |
| 73 | GO:0015035: protein disulfide oxidoreductase activity | 3.29E-02 |
| 74 | GO:0016740: transferase activity | 4.12E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.07E-35 |
| 2 | GO:0009570: chloroplast stroma | 7.77E-20 |
| 3 | GO:0009941: chloroplast envelope | 7.28E-14 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 2.67E-10 |
| 5 | GO:0009543: chloroplast thylakoid lumen | 2.59E-09 |
| 6 | GO:0031977: thylakoid lumen | 4.33E-09 |
| 7 | GO:0009579: thylakoid | 4.75E-05 |
| 8 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 9.14E-05 |
| 9 | GO:0017101: aminoacyl-tRNA synthetase multienzyme complex | 9.14E-05 |
| 10 | GO:0009654: photosystem II oxygen evolving complex | 3.15E-04 |
| 11 | GO:0019898: extrinsic component of membrane | 6.49E-04 |
| 12 | GO:0005840: ribosome | 9.35E-04 |
| 13 | GO:0009534: chloroplast thylakoid | 1.77E-03 |
| 14 | GO:0005811: lipid particle | 1.96E-03 |
| 15 | GO:0031969: chloroplast membrane | 2.04E-03 |
| 16 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.21E-03 |
| 17 | GO:0009706: chloroplast inner membrane | 3.89E-03 |
| 18 | GO:0030095: chloroplast photosystem II | 3.93E-03 |
| 19 | GO:0000312: plastid small ribosomal subunit | 3.93E-03 |
| 20 | GO:0030076: light-harvesting complex | 4.26E-03 |
| 21 | GO:0042651: thylakoid membrane | 5.27E-03 |
| 22 | GO:0009532: plastid stroma | 5.62E-03 |
| 23 | GO:0009522: photosystem I | 8.32E-03 |
| 24 | GO:0009523: photosystem II | 8.74E-03 |
| 25 | GO:0010319: stromule | 1.09E-02 |
| 26 | GO:0030529: intracellular ribonucleoprotein complex | 1.19E-02 |
| 27 | GO:0015934: large ribosomal subunit | 1.59E-02 |
| 28 | GO:0009536: plastid | 2.18E-02 |
| 29 | GO:0010287: plastoglobule | 3.64E-02 |
| 30 | GO:0005623: cell | 3.85E-02 |
| 31 | GO:0005739: mitochondrion | 4.59E-02 |