Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G43960

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070478: nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay0.00E+00
2GO:0000478: endonucleolytic cleavage involved in rRNA processing0.00E+00
3GO:0032324: molybdopterin cofactor biosynthetic process0.00E+00
4GO:0017126: nucleologenesis0.00E+00
5GO:0043633: polyadenylation-dependent RNA catabolic process0.00E+00
6GO:0010636: positive regulation of mitochondrial fusion0.00E+00
7GO:0080056: petal vascular tissue pattern formation0.00E+00
8GO:0048312: intracellular distribution of mitochondria0.00E+00
9GO:0080057: sepal vascular tissue pattern formation0.00E+00
10GO:0006364: rRNA processing1.45E-09
11GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)1.74E-06
12GO:1902466: positive regulation of histone H3-K27 trimethylation1.67E-05
13GO:0006413: translational initiation4.07E-05
14GO:0060149: negative regulation of posttranscriptional gene silencing4.35E-05
15GO:0018315: molybdenum incorporation into molybdenum-molybdopterin complex4.35E-05
16GO:0010074: maintenance of meristem identity7.77E-05
17GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway1.61E-04
18GO:0042273: ribosomal large subunit biogenesis1.61E-04
19GO:0032876: negative regulation of DNA endoreduplication2.09E-04
20GO:0016070: RNA metabolic process2.59E-04
21GO:0006777: Mo-molybdopterin cofactor biosynthetic process2.59E-04
22GO:0009423: chorismate biosynthetic process3.11E-04
23GO:0006417: regulation of translation3.73E-04
24GO:0006875: cellular metal ion homeostasis4.23E-04
25GO:0010093: specification of floral organ identity4.82E-04
26GO:0060321: acceptance of pollen4.82E-04
27GO:0009793: embryo development ending in seed dormancy4.86E-04
28GO:0009073: aromatic amino acid family biosynthetic process7.34E-04
29GO:0000266: mitochondrial fission8.01E-04
30GO:0010588: cotyledon vascular tissue pattern formation8.70E-04
31GO:0006446: regulation of translational initiation9.39E-04
32GO:0009933: meristem structural organization9.39E-04
33GO:0080188: RNA-directed DNA methylation1.01E-03
34GO:0051302: regulation of cell division1.23E-03
35GO:0042254: ribosome biogenesis1.24E-03
36GO:0009693: ethylene biosynthetic process1.47E-03
37GO:0010305: leaf vascular tissue pattern formation1.82E-03
38GO:0006886: intracellular protein transport1.83E-03
39GO:0016579: protein deubiquitination2.57E-03
40GO:0016126: sterol biosynthetic process2.68E-03
41GO:0008219: cell death3.20E-03
42GO:0048367: shoot system development6.28E-03
43GO:0009553: embryo sac development6.84E-03
44GO:0009790: embryo development9.10E-03
45GO:0010150: leaf senescence1.02E-02
46GO:0009617: response to bacterium1.16E-02
47GO:0048366: leaf development1.56E-02
48GO:0016192: vesicle-mediated transport1.68E-02
49GO:0006397: mRNA processing2.21E-02
50GO:0048364: root development2.21E-02
51GO:0009734: auxin-activated signaling pathway2.73E-02
52GO:0009611: response to wounding3.27E-02
53GO:0006511: ubiquitin-dependent protein catabolic process4.01E-02
RankGO TermAdjusted P value
1GO:0004631: phosphomevalonate kinase activity0.00E+00
2GO:0061599: molybdopterin molybdotransferase activity0.00E+00
3GO:0061598: molybdopterin adenylyltransferase activity0.00E+00
4GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity4.35E-05
5GO:0003743: translation initiation factor activity5.77E-05
6GO:0070181: small ribosomal subunit rRNA binding7.77E-05
7GO:0030151: molybdenum ion binding2.09E-04
8GO:0003729: mRNA binding2.42E-04
9GO:0030515: snoRNA binding3.66E-04
10GO:0043022: ribosome binding4.23E-04
11GO:0000166: nucleotide binding4.41E-04
12GO:0003724: RNA helicase activity4.82E-04
13GO:0003723: RNA binding6.24E-04
14GO:0008408: 3'-5' exonuclease activity1.31E-03
15GO:0036459: thiol-dependent ubiquitinyl hydrolase activity1.31E-03
16GO:0030276: clathrin binding1.82E-03
17GO:0004843: thiol-dependent ubiquitin-specific protease activity2.09E-03
18GO:0004004: ATP-dependent RNA helicase activity2.99E-03
19GO:0005198: structural molecule activity4.83E-03
20GO:0003676: nucleic acid binding6.26E-03
21GO:0005525: GTP binding6.28E-03
22GO:0008026: ATP-dependent helicase activity7.28E-03
23GO:0003924: GTPase activity2.14E-02
24GO:0016887: ATPase activity2.92E-02
25GO:0005524: ATP binding3.78E-02
RankGO TermAdjusted P value
1GO:0005850: eukaryotic translation initiation factor 2 complex0.00E+00
2GO:0030692: Noc4p-Nop14p complex0.00E+00
3GO:0055087: Ski complex0.00E+00
4GO:0005730: nucleolus6.25E-11
5GO:0032040: small-subunit processome5.45E-08
6GO:0043614: multi-eIF complex1.67E-05
7GO:0000176: nuclear exosome (RNase complex)7.77E-05
8GO:0005851: eukaryotic translation initiation factor 2B complex2.59E-04
9GO:0033290: eukaryotic 48S preinitiation complex3.11E-04
10GO:0030687: preribosome, large subunit precursor3.66E-04
11GO:0034399: nuclear periphery4.23E-04
12GO:0005680: anaphase-promoting complex5.42E-04
13GO:0005829: cytosol5.52E-04
14GO:0005654: nucleoplasm5.76E-04
15GO:0005634: nucleus5.89E-03
16GO:0016607: nuclear speck6.28E-03
17GO:0005732: small nucleolar ribonucleoprotein complex7.42E-03
18GO:0080008: Cul4-RING E3 ubiquitin ligase complex1.49E-02
19GO:0005737: cytoplasm1.65E-02
20GO:0005777: peroxisome3.55E-02
21GO:0005622: intracellular4.85E-02
Gene type



Gene DE type