co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G42750

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000024: maltose biosynthetic process	0.00E+00
2	GO:0009264: deoxyribonucleotide catabolic process	0.00E+00
3	GO:0051555: flavonol biosynthetic process	5.94E-07
4	GO:0009963: positive regulation of flavonoid biosynthetic process	1.91E-06
5	GO:0080167: response to karrikin	7.81E-06
6	GO:0010076: maintenance of floral meristem identity	1.38E-05
7	GO:0009813: flavonoid biosynthetic process	4.33E-05
8	GO:0010218: response to far red light	4.68E-05
9	GO:0030154: cell differentiation	5.12E-05
10	GO:0031539: positive regulation of anthocyanin metabolic process	5.94E-05
11	GO:0050691: regulation of defense response to virus by host	5.94E-05
12	GO:0019605: butyrate metabolic process	5.94E-05
13	GO:0006083: acetate metabolic process	5.94E-05
14	GO:0051973: positive regulation of telomerase activity	5.94E-05
15	GO:0048438: floral whorl development	5.94E-05
16	GO:0000272: polysaccharide catabolic process	7.05E-05
17	GO:0010224: response to UV-B	1.38E-04
18	GO:0019388: galactose catabolic process	1.44E-04
19	GO:0010220: positive regulation of vernalization response	1.44E-04
20	GO:1900386: positive regulation of flavonol biosynthetic process	1.44E-04
21	GO:0071712: ER-associated misfolded protein catabolic process	1.44E-04
22	GO:0009909: regulation of flower development	1.52E-04
23	GO:0009411: response to UV	2.34E-04
24	GO:0010253: UDP-rhamnose biosynthetic process	2.46E-04
25	GO:0040009: regulation of growth rate	2.46E-04
26	GO:0006651: diacylglycerol biosynthetic process	2.46E-04
27	GO:0009743: response to carbohydrate	3.57E-04
28	GO:0042823: pyridoxal phosphate biosynthetic process	3.57E-04
29	GO:0009590: detection of gravity	3.57E-04
30	GO:0009733: response to auxin	3.78E-04
31	GO:0007623: circadian rhythm	4.44E-04
32	GO:0009765: photosynthesis, light harvesting	4.78E-04
33	GO:0034613: cellular protein localization	4.78E-04
34	GO:0048442: sepal development	4.78E-04
35	GO:0009611: response to wounding	5.82E-04
36	GO:0006097: glyoxylate cycle	6.05E-04
37	GO:0010315: auxin efflux	7.40E-04
38	GO:0006559: L-phenylalanine catabolic process	7.40E-04
39	GO:0000060: protein import into nucleus, translocation	7.40E-04
40	GO:0006796: phosphate-containing compound metabolic process	7.40E-04
41	GO:0010077: maintenance of inflorescence meristem identity	8.82E-04
42	GO:0005978: glycogen biosynthetic process	1.18E-03
43	GO:0009787: regulation of abscisic acid-activated signaling pathway	1.18E-03
44	GO:0030162: regulation of proteolysis	1.18E-03
45	GO:0010114: response to red light	1.18E-03
46	GO:0009926: auxin polar transport	1.18E-03
47	GO:0010099: regulation of photomorphogenesis	1.35E-03
48	GO:0022900: electron transport chain	1.35E-03
49	GO:0031347: regulation of defense response	1.42E-03
50	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.42E-03
51	GO:0000165: MAPK cascade	1.42E-03
52	GO:0009751: response to salicylic acid	1.59E-03
53	GO:0010018: far-red light signaling pathway	1.69E-03
54	GO:0009753: response to jasmonic acid	1.77E-03
55	GO:0048441: petal development	1.88E-03
56	GO:0009698: phenylpropanoid metabolic process	2.07E-03
57	GO:1903507: negative regulation of nucleic acid-templated transcription	2.07E-03
58	GO:0048229: gametophyte development	2.07E-03
59	GO:0005983: starch catabolic process	2.27E-03
60	GO:0016024: CDP-diacylglycerol biosynthetic process	2.27E-03
61	GO:0010582: floral meristem determinacy	2.27E-03
62	GO:0016925: protein sumoylation	2.27E-03
63	GO:0006006: glucose metabolic process	2.47E-03
64	GO:0010143: cutin biosynthetic process	2.68E-03
65	GO:0048440: carpel development	2.68E-03
66	GO:0002237: response to molecule of bacterial origin	2.68E-03
67	GO:0010223: secondary shoot formation	2.68E-03
68	GO:0009934: regulation of meristem structural organization	2.68E-03
69	GO:0010167: response to nitrate	2.89E-03
70	GO:0009225: nucleotide-sugar metabolic process	2.89E-03
71	GO:0042753: positive regulation of circadian rhythm	3.11E-03
72	GO:0006487: protein N-linked glycosylation	3.34E-03
73	GO:0009768: photosynthesis, light harvesting in photosystem I	3.57E-03
74	GO:0010017: red or far-red light signaling pathway	4.05E-03
75	GO:2000022: regulation of jasmonic acid mediated signaling pathway	4.05E-03
76	GO:0009739: response to gibberellin	4.25E-03
77	GO:0010584: pollen exine formation	4.55E-03
78	GO:0048443: stamen development	4.55E-03
79	GO:0019722: calcium-mediated signaling	4.55E-03
80	GO:0042127: regulation of cell proliferation	4.55E-03
81	GO:0016117: carotenoid biosynthetic process	4.81E-03
82	GO:0009958: positive gravitropism	5.34E-03
83	GO:0006520: cellular amino acid metabolic process	5.34E-03
84	GO:0010182: sugar mediated signaling pathway	5.34E-03
85	GO:0006342: chromatin silencing	5.34E-03
86	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	5.43E-03
87	GO:0019252: starch biosynthetic process	5.89E-03
88	GO:0006355: regulation of transcription, DNA-templated	6.13E-03
89	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	6.17E-03
90	GO:1901657: glycosyl compound metabolic process	6.75E-03
91	GO:0009723: response to ethylene	6.78E-03
92	GO:0016125: sterol metabolic process	7.05E-03
93	GO:0010252: auxin homeostasis	7.05E-03
94	GO:0007267: cell-cell signaling	7.35E-03
95	GO:0009911: positive regulation of flower development	7.97E-03
96	GO:0071555: cell wall organization	8.15E-03
97	GO:0048573: photoperiodism, flowering	8.92E-03
98	GO:0016311: dephosphorylation	9.25E-03
99	GO:0018298: protein-chromophore linkage	9.59E-03
100	GO:0010311: lateral root formation	9.93E-03
101	GO:0010119: regulation of stomatal movement	1.06E-02
102	GO:0009637: response to blue light	1.13E-02
103	GO:0008152: metabolic process	1.18E-02
104	GO:0006351: transcription, DNA-templated	1.18E-02
105	GO:0009409: response to cold	1.20E-02
106	GO:0006631: fatty acid metabolic process	1.28E-02
107	GO:0042542: response to hydrogen peroxide	1.32E-02
108	GO:0009640: photomorphogenesis	1.35E-02
109	GO:0005975: carbohydrate metabolic process	1.39E-02
110	GO:0009734: auxin-activated signaling pathway	1.52E-02
111	GO:0009809: lignin biosynthetic process	1.67E-02
112	GO:0009585: red, far-red light phototransduction	1.67E-02
113	GO:0009908: flower development	1.73E-02
114	GO:0009740: gibberellic acid mediated signaling pathway	2.06E-02
115	GO:0009553: embryo sac development	2.10E-02
116	GO:0042545: cell wall modification	2.10E-02
117	GO:0009737: response to abscisic acid	2.13E-02
118	GO:0045893: positive regulation of transcription, DNA-templated	2.20E-02
119	GO:0009845: seed germination	2.67E-02
120	GO:0006413: translational initiation	3.02E-02
121	GO:0045490: pectin catabolic process	3.17E-02
122	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.44E-02

Rank	GO Term	Adjusted P value
1	GO:1990055: phenylacetaldehyde synthase activity	0.00E+00
2	GO:0016161: beta-amylase activity	5.83E-08
3	GO:0045430: chalcone isomerase activity	3.69E-06
4	GO:0102229: amylopectin maltohydrolase activity	9.58E-06
5	GO:0047760: butyrate-CoA ligase activity	5.94E-05
6	GO:0004837: tyrosine decarboxylase activity	5.94E-05
7	GO:0045486: naringenin 3-dioxygenase activity	5.94E-05
8	GO:0003987: acetate-CoA ligase activity	5.94E-05
9	GO:0050377: UDP-glucose 4,6-dehydratase activity	1.44E-04
10	GO:0004614: phosphoglucomutase activity	1.44E-04
11	GO:0044390: ubiquitin-like protein conjugating enzyme binding	1.44E-04
12	GO:0016868: intramolecular transferase activity, phosphotransferases	1.44E-04
13	GO:0008460: dTDP-glucose 4,6-dehydratase activity	1.44E-04
14	GO:0010280: UDP-L-rhamnose synthase activity	1.44E-04
15	GO:0008253: 5'-nucleotidase activity	2.46E-04
16	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.46E-04
17	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	3.57E-04
18	GO:0046527: glucosyltransferase activity	4.78E-04
19	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	4.78E-04
20	GO:0031386: protein tag	6.05E-04
21	GO:0045431: flavonol synthase activity	6.05E-04
22	GO:0008429: phosphatidylethanolamine binding	7.40E-04
23	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	7.40E-04
24	GO:0016208: AMP binding	7.40E-04
25	GO:0016462: pyrophosphatase activity	7.40E-04
26	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	7.40E-04
27	GO:0008195: phosphatidate phosphatase activity	8.82E-04
28	GO:0004427: inorganic diphosphatase activity	1.03E-03
29	GO:0016621: cinnamoyl-CoA reductase activity	1.03E-03
30	GO:0016207: 4-coumarate-CoA ligase activity	1.52E-03
31	GO:0009672: auxin:proton symporter activity	1.69E-03
32	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.72E-03
33	GO:0010329: auxin efflux transmembrane transporter activity	2.47E-03
34	GO:0003712: transcription cofactor activity	2.89E-03
35	GO:0031409: pigment binding	3.11E-03
36	GO:0003714: transcription corepressor activity	3.34E-03
37	GO:0031418: L-ascorbic acid binding	3.34E-03
38	GO:0008194: UDP-glycosyltransferase activity	4.25E-03
39	GO:0004402: histone acetyltransferase activity	5.07E-03
40	GO:0043565: sequence-specific DNA binding	5.41E-03
41	GO:0016853: isomerase activity	5.61E-03
42	GO:0046982: protein heterodimerization activity	5.75E-03
43	GO:0000287: magnesium ion binding	5.75E-03
44	GO:0016791: phosphatase activity	7.05E-03
45	GO:0016759: cellulose synthase activity	7.05E-03
46	GO:0016168: chlorophyll binding	8.28E-03
47	GO:0008375: acetylglucosaminyltransferase activity	8.60E-03
48	GO:0102483: scopolin beta-glucosidase activity	8.92E-03
49	GO:0016757: transferase activity, transferring glycosyl groups	1.04E-02
50	GO:0009055: electron carrier activity	1.15E-02
51	GO:0008422: beta-glucosidase activity	1.20E-02
52	GO:0005515: protein binding	1.35E-02
53	GO:0051537: 2 iron, 2 sulfur cluster binding	1.43E-02
54	GO:0003677: DNA binding	1.62E-02
55	GO:0003690: double-stranded DNA binding	1.71E-02
56	GO:0031625: ubiquitin protein ligase binding	1.80E-02
57	GO:0045330: aspartyl esterase activity	1.80E-02
58	GO:0004650: polygalacturonase activity	2.01E-02
59	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.01E-02
60	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.01E-02
61	GO:0016874: ligase activity	2.06E-02
62	GO:0030599: pectinesterase activity	2.06E-02
63	GO:0016746: transferase activity, transferring acyl groups	2.19E-02
64	GO:0015035: protein disulfide oxidoreductase activity	2.19E-02
65	GO:0016758: transferase activity, transferring hexosyl groups	2.47E-02
66	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.57E-02
67	GO:0016829: lyase activity	2.67E-02
68	GO:0030170: pyridoxal phosphate binding	2.72E-02
69	GO:0046910: pectinesterase inhibitor activity	3.02E-02
70	GO:0003743: translation initiation factor activity	3.54E-02
71	GO:0042802: identical protein binding	3.76E-02
72	GO:0003824: catalytic activity	4.24E-02

Rank	GO Term	Adjusted P value
1	GO:0042406: extrinsic component of endoplasmic reticulum membrane	2.46E-04
2	GO:0036513: Derlin-1 retrotranslocation complex	3.57E-04
3	GO:0030076: light-harvesting complex	2.89E-03
4	GO:0000790: nuclear chromatin	4.81E-03
5	GO:0009522: photosystem I	5.61E-03
6	GO:0031225: anchored component of membrane	5.85E-03
7	GO:0009523: photosystem II	5.89E-03
8	GO:0071944: cell periphery	6.75E-03
9	GO:0010319: stromule	7.35E-03
10	GO:0019005: SCF ubiquitin ligase complex	9.59E-03
11	GO:0000786: nucleosome	1.10E-02
12	GO:0009579: thylakoid	2.29E-02
13	GO:0010287: plastoglobule	2.43E-02
14	GO:0009543: chloroplast thylakoid lumen	2.52E-02
15	GO:0009570: chloroplast stroma	2.76E-02
16	GO:0005783: endoplasmic reticulum	3.03E-02
17	GO:0009705: plant-type vacuole membrane	3.17E-02
18	GO:0046658: anchored component of plasma membrane	3.87E-02
19	GO:0005774: vacuolar membrane	3.89E-02
20	GO:0009507: chloroplast	4.25E-02