Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G42520

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010203: response to very low fluence red light stimulus0.00E+00
2GO:0015015: heparan sulfate proteoglycan biosynthetic process, enzymatic modification0.00E+00
3GO:1903508: positive regulation of nucleic acid-templated transcription0.00E+00
4GO:0071311: cellular response to acetate0.00E+00
5GO:0071260: cellular response to mechanical stimulus0.00E+00
6GO:0080173: male-female gamete recognition during double fertilization3.90E-05
7GO:0015812: gamma-aminobutyric acid transport3.90E-05
8GO:0010201: response to continuous far red light stimulus by the high-irradiance response system3.90E-05
9GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway1.68E-04
10GO:0071230: cellular response to amino acid stimulus1.68E-04
11GO:0017006: protein-tetrapyrrole linkage1.68E-04
12GO:0090153: regulation of sphingolipid biosynthetic process1.68E-04
13GO:0045836: positive regulation of meiotic nuclear division1.68E-04
14GO:0010366: negative regulation of ethylene biosynthetic process1.68E-04
15GO:0044211: CTP salvage2.48E-04
16GO:0030100: regulation of endocytosis2.48E-04
17GO:0055070: copper ion homeostasis2.48E-04
18GO:0009630: gravitropism2.48E-04
19GO:1901000: regulation of response to salt stress2.48E-04
20GO:0009584: detection of visible light2.48E-04
21GO:0044206: UMP salvage3.33E-04
22GO:0010483: pollen tube reception3.33E-04
23GO:0009652: thigmotropism3.33E-04
24GO:0006661: phosphatidylinositol biosynthetic process3.33E-04
25GO:2000306: positive regulation of photomorphogenesis3.33E-04
26GO:0030308: negative regulation of cell growth4.25E-04
27GO:0045927: positive regulation of growth4.25E-04
28GO:0043097: pyrimidine nucleoside salvage4.25E-04
29GO:0048015: phosphatidylinositol-mediated signaling4.25E-04
30GO:0006461: protein complex assembly4.25E-04
31GO:0031053: primary miRNA processing5.22E-04
32GO:0045962: positive regulation of development, heterochronic5.22E-04
33GO:0006206: pyrimidine nucleobase metabolic process5.22E-04
34GO:0002238: response to molecule of fungal origin5.22E-04
35GO:0017148: negative regulation of translation6.22E-04
36GO:0010555: response to mannitol6.22E-04
37GO:2000067: regulation of root morphogenesis6.22E-04
38GO:0071470: cellular response to osmotic stress6.22E-04
39GO:0010161: red light signaling pathway7.28E-04
40GO:0008643: carbohydrate transport7.60E-04
41GO:0019827: stem cell population maintenance8.37E-04
42GO:0009827: plant-type cell wall modification9.50E-04
43GO:0007186: G-protein coupled receptor signaling pathway9.50E-04
44GO:0048507: meristem development1.07E-03
45GO:0007338: single fertilization1.07E-03
46GO:0046685: response to arsenic-containing substance1.07E-03
47GO:0048354: mucilage biosynthetic process involved in seed coat development1.19E-03
48GO:2000280: regulation of root development1.19E-03
49GO:0009638: phototropism1.19E-03
50GO:0006535: cysteine biosynthetic process from serine1.31E-03
51GO:0006816: calcium ion transport1.44E-03
52GO:0009750: response to fructose1.44E-03
53GO:0046856: phosphatidylinositol dephosphorylation1.44E-03
54GO:0010229: inflorescence development1.72E-03
55GO:0048768: root hair cell tip growth1.86E-03
56GO:0007030: Golgi organization2.01E-03
57GO:0019853: L-ascorbic acid biosynthetic process2.01E-03
58GO:0046854: phosphatidylinositol phosphorylation2.01E-03
59GO:0007031: peroxisome organization2.01E-03
60GO:0034976: response to endoplasmic reticulum stress2.16E-03
61GO:0019344: cysteine biosynthetic process2.32E-03
62GO:0006874: cellular calcium ion homeostasis2.48E-03
63GO:0051321: meiotic cell cycle2.64E-03
64GO:0003333: amino acid transmembrane transport2.64E-03
65GO:0061077: chaperone-mediated protein folding2.64E-03
66GO:0008380: RNA splicing2.65E-03
67GO:0010082: regulation of root meristem growth2.97E-03
68GO:0006012: galactose metabolic process2.97E-03
69GO:0019722: calcium-mediated signaling3.15E-03
70GO:0070417: cellular response to cold3.32E-03
71GO:0034220: ion transmembrane transport3.50E-03
72GO:0009741: response to brassinosteroid3.69E-03
73GO:0009723: response to ethylene3.95E-03
74GO:0009791: post-embryonic development4.06E-03
75GO:0009749: response to glucose4.06E-03
76GO:1901657: glycosyl compound metabolic process4.65E-03
77GO:0009567: double fertilization forming a zygote and endosperm4.85E-03
78GO:0010029: regulation of seed germination5.69E-03
79GO:0009788: negative regulation of abscisic acid-activated signaling pathway5.69E-03
80GO:0006950: response to stress6.13E-03
81GO:0048364: root development6.50E-03
82GO:0009817: defense response to fungus, incompatible interaction6.58E-03
83GO:0018298: protein-chromophore linkage6.58E-03
84GO:0010218: response to far red light7.04E-03
85GO:0045087: innate immune response7.75E-03
86GO:0009637: response to blue light7.75E-03
87GO:0009640: photomorphogenesis9.25E-03
88GO:0008283: cell proliferation9.25E-03
89GO:0009744: response to sucrose9.25E-03
90GO:0009965: leaf morphogenesis1.00E-02
91GO:0031347: regulation of defense response1.06E-02
92GO:0009737: response to abscisic acid1.06E-02
93GO:0009585: red, far-red light phototransduction1.14E-02
94GO:0009553: embryo sac development1.43E-02
95GO:0006511: ubiquitin-dependent protein catabolic process1.50E-02
96GO:0009742: brassinosteroid mediated signaling pathway1.52E-02
97GO:0000398: mRNA splicing, via spliceosome1.62E-02
98GO:0016567: protein ubiquitination1.67E-02
99GO:0009058: biosynthetic process1.78E-02
100GO:0006633: fatty acid biosynthetic process2.02E-02
101GO:0006979: response to oxidative stress2.26E-02
102GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process2.34E-02
103GO:0009739: response to gibberellin2.34E-02
104GO:0010468: regulation of gene expression2.45E-02
105GO:0009617: response to bacterium2.45E-02
106GO:0009733: response to auxin2.52E-02
107GO:0009860: pollen tube growth3.10E-02
108GO:0048366: leaf development3.31E-02
109GO:0005975: carbohydrate metabolic process3.41E-02
110GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.51E-02
111GO:0016192: vesicle-mediated transport3.56E-02
112GO:0046777: protein autophosphorylation3.60E-02
113GO:0045454: cell redox homeostasis3.90E-02
114GO:0006886: intracellular protein transport3.99E-02
115GO:0009408: response to heat4.53E-02
116GO:0006397: mRNA processing4.66E-02
RankGO TermAdjusted P value
1GO:0004567: beta-mannosidase activity0.00E+00
2GO:0017095: heparan sulfate 6-O-sulfotransferase activity0.00E+00
3GO:0080082: esculin beta-glucosidase activity0.00E+00
4GO:0015276: ligand-gated ion channel activity0.00E+00
5GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity0.00E+00
6GO:0047668: amygdalin beta-glucosidase activity0.00E+00
7GO:0080083: beta-gentiobiose beta-glucosidase activity0.00E+00
8GO:0008476: protein-tyrosine sulfotransferase activity0.00E+00
9GO:0010349: L-galactose dehydrogenase activity0.00E+00
10GO:0008066: glutamate receptor activity3.90E-05
11GO:0015185: gamma-aminobutyric acid transmembrane transporter activity3.90E-05
12GO:0008158: hedgehog receptor activity3.90E-05
13GO:0031516: far-red light photoreceptor activity3.90E-05
14GO:0080079: cellobiose glucosidase activity3.90E-05
15GO:0015180: L-alanine transmembrane transporter activity9.72E-05
16GO:0050017: L-3-cyanoalanine synthase activity9.72E-05
17GO:0009883: red or far-red light photoreceptor activity9.72E-05
18GO:0031683: G-protein beta/gamma-subunit complex binding1.68E-04
19GO:0008020: G-protein coupled photoreceptor activity1.68E-04
20GO:0001664: G-protein coupled receptor binding1.68E-04
21GO:0015181: arginine transmembrane transporter activity2.48E-04
22GO:0015189: L-lysine transmembrane transporter activity2.48E-04
23GO:0005313: L-glutamate transmembrane transporter activity3.33E-04
24GO:0004845: uracil phosphoribosyltransferase activity3.33E-04
25GO:0017137: Rab GTPase binding4.25E-04
26GO:0004849: uridine kinase activity6.22E-04
27GO:0004124: cysteine synthase activity6.22E-04
28GO:0004033: aldo-keto reductase (NADP) activity8.37E-04
29GO:0004430: 1-phosphatidylinositol 4-kinase activity9.50E-04
30GO:0031625: ubiquitin protein ligase binding1.03E-03
31GO:0004842: ubiquitin-protein transferase activity1.15E-03
32GO:0004673: protein histidine kinase activity1.31E-03
33GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity1.58E-03
34GO:0004565: beta-galactosidase activity1.72E-03
35GO:0000155: phosphorelay sensor kinase activity1.72E-03
36GO:0005262: calcium channel activity1.72E-03
37GO:0005217: intracellular ligand-gated ion channel activity2.01E-03
38GO:0004970: ionotropic glutamate receptor activity2.01E-03
39GO:0015297: antiporter activity2.13E-03
40GO:0043424: protein histidine kinase binding2.48E-03
41GO:0019706: protein-cysteine S-palmitoyltransferase activity2.64E-03
42GO:0003756: protein disulfide isomerase activity3.15E-03
43GO:0004871: signal transducer activity5.30E-03
44GO:0102483: scopolin beta-glucosidase activity6.13E-03
45GO:0005515: protein binding6.37E-03
46GO:0004672: protein kinase activity6.62E-03
47GO:0008422: beta-glucosidase activity8.24E-03
48GO:0015171: amino acid transmembrane transporter activity1.23E-02
49GO:0022857: transmembrane transporter activity1.40E-02
50GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.75E-02
51GO:0005525: GTP binding1.82E-02
52GO:0030170: pyridoxal phosphate binding1.85E-02
53GO:0042802: identical protein binding2.56E-02
54GO:0003729: mRNA binding3.34E-02
55GO:0004497: monooxygenase activity3.43E-02
56GO:0061630: ubiquitin protein ligase activity3.56E-02
57GO:0042803: protein homodimerization activity4.03E-02
58GO:0003924: GTPase activity4.53E-02
RankGO TermAdjusted P value
1GO:0043680: filiform apparatus0.00E+00
2GO:0035619: root hair tip2.48E-04
3GO:0010445: nuclear dicing body3.33E-04
4GO:0000151: ubiquitin ligase complex4.39E-04
5GO:0005798: Golgi-associated vesicle5.22E-04
6GO:0005681: spliceosomal complex1.10E-03
7GO:0016607: nuclear speck1.13E-03
8GO:0005834: heterotrimeric G-protein complex1.16E-03
9GO:0016604: nuclear body1.19E-03
10GO:0030659: cytoplasmic vesicle membrane1.86E-03
11GO:0005769: early endosome2.16E-03
12GO:0009506: plasmodesma3.15E-03
13GO:0005768: endosome3.56E-03
14GO:0016021: integral component of membrane4.55E-03
15GO:0005778: peroxisomal membrane5.05E-03
16GO:0005794: Golgi apparatus5.71E-03
17GO:0000139: Golgi membrane5.97E-03
18GO:0031966: mitochondrial membrane1.09E-02
19GO:0005802: trans-Golgi network1.78E-02
20GO:0009505: plant-type cell wall2.82E-02
21GO:0080008: Cul4-RING E3 ubiquitin ligase complex3.14E-02
22GO:0005789: endoplasmic reticulum membrane3.43E-02
23GO:0016020: membrane4.53E-02
Gene type



Gene DE type