GO Enrichment Analysis of Co-expressed Genes with
AT5G42240
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 2 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 3 | GO:0006437: tyrosyl-tRNA aminoacylation | 0.00E+00 |
| 4 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 5 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 6 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 7 | GO:0006642: triglyceride mobilization | 0.00E+00 |
| 8 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 9 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 10 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 11 | GO:0051503: adenine nucleotide transport | 0.00E+00 |
| 12 | GO:0015979: photosynthesis | 3.31E-08 |
| 13 | GO:0071482: cellular response to light stimulus | 1.34E-06 |
| 14 | GO:0009658: chloroplast organization | 3.71E-06 |
| 15 | GO:0006352: DNA-templated transcription, initiation | 4.56E-06 |
| 16 | GO:2001141: regulation of RNA biosynthetic process | 7.04E-06 |
| 17 | GO:0006400: tRNA modification | 6.22E-05 |
| 18 | GO:0009657: plastid organization | 1.02E-04 |
| 19 | GO:0010027: thylakoid membrane organization | 1.20E-04 |
| 20 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.25E-04 |
| 21 | GO:1904964: positive regulation of phytol biosynthetic process | 1.25E-04 |
| 22 | GO:0006427: histidyl-tRNA aminoacylation | 1.25E-04 |
| 23 | GO:0009051: pentose-phosphate shunt, oxidative branch | 1.25E-04 |
| 24 | GO:0046166: glyceraldehyde-3-phosphate biosynthetic process | 1.25E-04 |
| 25 | GO:0009443: pyridoxal 5'-phosphate salvage | 1.25E-04 |
| 26 | GO:0018298: protein-chromophore linkage | 1.76E-04 |
| 27 | GO:0006415: translational termination | 2.10E-04 |
| 28 | GO:0006094: gluconeogenesis | 2.77E-04 |
| 29 | GO:0006568: tryptophan metabolic process | 2.90E-04 |
| 30 | GO:0010270: photosystem II oxygen evolving complex assembly | 2.90E-04 |
| 31 | GO:0043039: tRNA aminoacylation | 2.90E-04 |
| 32 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.90E-04 |
| 33 | GO:0010020: chloroplast fission | 3.14E-04 |
| 34 | GO:0019253: reductive pentose-phosphate cycle | 3.14E-04 |
| 35 | GO:0019563: glycerol catabolic process | 4.78E-04 |
| 36 | GO:0006518: peptide metabolic process | 4.78E-04 |
| 37 | GO:0071492: cellular response to UV-A | 4.78E-04 |
| 38 | GO:0006760: folic acid-containing compound metabolic process | 4.78E-04 |
| 39 | GO:0030865: cortical cytoskeleton organization | 4.78E-04 |
| 40 | GO:0032504: multicellular organism reproduction | 4.78E-04 |
| 41 | GO:0000913: preprophase band assembly | 4.78E-04 |
| 42 | GO:0010581: regulation of starch biosynthetic process | 4.78E-04 |
| 43 | GO:0009768: photosynthesis, light harvesting in photosystem I | 4.81E-04 |
| 44 | GO:0006418: tRNA aminoacylation for protein translation | 4.81E-04 |
| 45 | GO:0006096: glycolytic process | 6.21E-04 |
| 46 | GO:0009152: purine ribonucleotide biosynthetic process | 6.85E-04 |
| 47 | GO:0046653: tetrahydrofolate metabolic process | 6.85E-04 |
| 48 | GO:0046902: regulation of mitochondrial membrane permeability | 6.85E-04 |
| 49 | GO:0016556: mRNA modification | 6.85E-04 |
| 50 | GO:0046656: folic acid biosynthetic process | 9.08E-04 |
| 51 | GO:0071483: cellular response to blue light | 9.08E-04 |
| 52 | GO:0071486: cellular response to high light intensity | 9.08E-04 |
| 53 | GO:0031365: N-terminal protein amino acid modification | 1.15E-03 |
| 54 | GO:0009247: glycolipid biosynthetic process | 1.15E-03 |
| 55 | GO:0010190: cytochrome b6f complex assembly | 1.41E-03 |
| 56 | GO:0042549: photosystem II stabilization | 1.41E-03 |
| 57 | GO:0000470: maturation of LSU-rRNA | 1.41E-03 |
| 58 | GO:0016554: cytidine to uridine editing | 1.41E-03 |
| 59 | GO:0006828: manganese ion transport | 1.41E-03 |
| 60 | GO:0046654: tetrahydrofolate biosynthetic process | 1.68E-03 |
| 61 | GO:0009854: oxidative photosynthetic carbon pathway | 1.68E-03 |
| 62 | GO:0009645: response to low light intensity stimulus | 1.98E-03 |
| 63 | GO:0010196: nonphotochemical quenching | 1.98E-03 |
| 64 | GO:0019375: galactolipid biosynthetic process | 2.29E-03 |
| 65 | GO:0048564: photosystem I assembly | 2.29E-03 |
| 66 | GO:0009637: response to blue light | 2.43E-03 |
| 67 | GO:0009853: photorespiration | 2.43E-03 |
| 68 | GO:0032544: plastid translation | 2.61E-03 |
| 69 | GO:0019430: removal of superoxide radicals | 2.61E-03 |
| 70 | GO:0000373: Group II intron splicing | 2.95E-03 |
| 71 | GO:0006098: pentose-phosphate shunt | 2.95E-03 |
| 72 | GO:0010114: response to red light | 3.12E-03 |
| 73 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.31E-03 |
| 74 | GO:1900865: chloroplast RNA modification | 3.31E-03 |
| 75 | GO:0010380: regulation of chlorophyll biosynthetic process | 3.31E-03 |
| 76 | GO:0009644: response to high light intensity | 3.37E-03 |
| 77 | GO:0006535: cysteine biosynthetic process from serine | 3.68E-03 |
| 78 | GO:0045036: protein targeting to chloroplast | 3.68E-03 |
| 79 | GO:0006782: protoporphyrinogen IX biosynthetic process | 3.68E-03 |
| 80 | GO:0009073: aromatic amino acid family biosynthetic process | 4.06E-03 |
| 81 | GO:0043085: positive regulation of catalytic activity | 4.06E-03 |
| 82 | GO:0018119: peptidyl-cysteine S-nitrosylation | 4.06E-03 |
| 83 | GO:0006816: calcium ion transport | 4.06E-03 |
| 84 | GO:0006006: glucose metabolic process | 4.86E-03 |
| 85 | GO:0010207: photosystem II assembly | 5.28E-03 |
| 86 | GO:0090351: seedling development | 5.71E-03 |
| 87 | GO:0006397: mRNA processing | 6.07E-03 |
| 88 | GO:0019344: cysteine biosynthetic process | 6.61E-03 |
| 89 | GO:0016575: histone deacetylation | 7.08E-03 |
| 90 | GO:0061077: chaperone-mediated protein folding | 7.56E-03 |
| 91 | GO:0080022: primary root development | 1.01E-02 |
| 92 | GO:0000226: microtubule cytoskeleton organization | 1.01E-02 |
| 93 | GO:0007018: microtubule-based movement | 1.12E-02 |
| 94 | GO:0008380: RNA splicing | 1.23E-02 |
| 95 | GO:0016032: viral process | 1.30E-02 |
| 96 | GO:0001666: response to hypoxia | 1.61E-02 |
| 97 | GO:0055085: transmembrane transport | 1.61E-02 |
| 98 | GO:0006457: protein folding | 1.65E-02 |
| 99 | GO:0042128: nitrate assimilation | 1.74E-02 |
| 100 | GO:0015995: chlorophyll biosynthetic process | 1.81E-02 |
| 101 | GO:0048481: plant ovule development | 1.94E-02 |
| 102 | GO:0010218: response to far red light | 2.08E-02 |
| 103 | GO:0045454: cell redox homeostasis | 2.38E-02 |
| 104 | GO:0030001: metal ion transport | 2.52E-02 |
| 105 | GO:0032259: methylation | 2.81E-02 |
| 106 | GO:0048364: root development | 3.06E-02 |
| 107 | GO:0008152: metabolic process | 3.23E-02 |
| 108 | GO:0048367: shoot system development | 3.92E-02 |
| 109 | GO:0048316: seed development | 3.92E-02 |
| 110 | GO:0006508: proteolysis | 3.98E-02 |
| 111 | GO:0009409: response to cold | 4.22E-02 |
| 112 | GO:0006396: RNA processing | 4.47E-02 |
| 113 | GO:0009735: response to cytokinin | 4.73E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 2 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 3 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 4 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 5 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 6 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 7 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 8 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 9 | GO:0001053: plastid sigma factor activity | 4.49E-08 |
| 10 | GO:0016987: sigma factor activity | 4.49E-08 |
| 11 | GO:0016168: chlorophyll binding | 5.35E-06 |
| 12 | GO:0016149: translation release factor activity, codon specific | 7.04E-06 |
| 13 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.33E-05 |
| 14 | GO:0005528: FK506 binding | 1.61E-05 |
| 15 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.17E-05 |
| 16 | GO:0004033: aldo-keto reductase (NADP) activity | 8.08E-05 |
| 17 | GO:0004821: histidine-tRNA ligase activity | 1.25E-04 |
| 18 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 1.25E-04 |
| 19 | GO:0003747: translation release factor activity | 1.25E-04 |
| 20 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 1.25E-04 |
| 21 | GO:0004807: triose-phosphate isomerase activity | 1.25E-04 |
| 22 | GO:0004831: tyrosine-tRNA ligase activity | 1.25E-04 |
| 23 | GO:0031072: heat shock protein binding | 2.77E-04 |
| 24 | GO:0004150: dihydroneopterin aldolase activity | 2.90E-04 |
| 25 | GO:0050017: L-3-cyanoalanine synthase activity | 2.90E-04 |
| 26 | GO:0004618: phosphoglycerate kinase activity | 2.90E-04 |
| 27 | GO:0102083: 7,8-dihydromonapterin aldolase activity | 2.90E-04 |
| 28 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 2.90E-04 |
| 29 | GO:0031409: pigment binding | 3.93E-04 |
| 30 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 4.78E-04 |
| 31 | GO:0070402: NADPH binding | 4.78E-04 |
| 32 | GO:0008864: formyltetrahydrofolate deformylase activity | 4.78E-04 |
| 33 | GO:0002161: aminoacyl-tRNA editing activity | 4.78E-04 |
| 34 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 5.03E-04 |
| 35 | GO:0022891: substrate-specific transmembrane transporter activity | 6.28E-04 |
| 36 | GO:0035250: UDP-galactosyltransferase activity | 6.85E-04 |
| 37 | GO:0048487: beta-tubulin binding | 6.85E-04 |
| 38 | GO:0017057: 6-phosphogluconolactonase activity | 6.85E-04 |
| 39 | GO:0004812: aminoacyl-tRNA ligase activity | 7.35E-04 |
| 40 | GO:0051082: unfolded protein binding | 7.83E-04 |
| 41 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 9.08E-04 |
| 42 | GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed | 9.08E-04 |
| 43 | GO:0043495: protein anchor | 9.08E-04 |
| 44 | GO:0005471: ATP:ADP antiporter activity | 1.15E-03 |
| 45 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.15E-03 |
| 46 | GO:0004332: fructose-bisphosphate aldolase activity | 1.41E-03 |
| 47 | GO:0004124: cysteine synthase activity | 1.68E-03 |
| 48 | GO:0019899: enzyme binding | 1.98E-03 |
| 49 | GO:0008235: metalloexopeptidase activity | 1.98E-03 |
| 50 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 2.61E-03 |
| 51 | GO:0003723: RNA binding | 3.21E-03 |
| 52 | GO:0005384: manganese ion transmembrane transporter activity | 3.31E-03 |
| 53 | GO:0008047: enzyme activator activity | 3.68E-03 |
| 54 | GO:0004177: aminopeptidase activity | 4.06E-03 |
| 55 | GO:0000049: tRNA binding | 4.45E-03 |
| 56 | GO:0015095: magnesium ion transmembrane transporter activity | 4.86E-03 |
| 57 | GO:0004407: histone deacetylase activity | 6.61E-03 |
| 58 | GO:0019843: rRNA binding | 7.46E-03 |
| 59 | GO:0003756: protein disulfide isomerase activity | 9.07E-03 |
| 60 | GO:0050662: coenzyme binding | 1.12E-02 |
| 61 | GO:0004791: thioredoxin-disulfide reductase activity | 1.12E-02 |
| 62 | GO:0042802: identical protein binding | 1.31E-02 |
| 63 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.36E-02 |
| 64 | GO:0008168: methyltransferase activity | 1.54E-02 |
| 65 | GO:0008236: serine-type peptidase activity | 1.87E-02 |
| 66 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 1.87E-02 |
| 67 | GO:0004222: metalloendopeptidase activity | 2.08E-02 |
| 68 | GO:0016787: hydrolase activity | 2.35E-02 |
| 69 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 2.37E-02 |
| 70 | GO:0046872: metal ion binding | 2.43E-02 |
| 71 | GO:0042803: protein homodimerization activity | 2.49E-02 |
| 72 | GO:0050661: NADP binding | 2.52E-02 |
| 73 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.52E-02 |
| 74 | GO:0005509: calcium ion binding | 2.62E-02 |
| 75 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.91E-02 |
| 76 | GO:0043621: protein self-association | 2.91E-02 |
| 77 | GO:0003924: GTPase activity | 2.93E-02 |
| 78 | GO:0005198: structural molecule activity | 2.99E-02 |
| 79 | GO:0004519: endonuclease activity | 3.19E-02 |
| 80 | GO:0003777: microtubule motor activity | 3.66E-02 |
| 81 | GO:0016746: transferase activity, transferring acyl groups | 4.47E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.36E-42 |
| 2 | GO:0009570: chloroplast stroma | 1.05E-18 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 2.27E-17 |
| 4 | GO:0009941: chloroplast envelope | 3.26E-12 |
| 5 | GO:0009543: chloroplast thylakoid lumen | 8.96E-12 |
| 6 | GO:0009579: thylakoid | 4.66E-10 |
| 7 | GO:0031977: thylakoid lumen | 6.90E-07 |
| 8 | GO:0042651: thylakoid membrane | 1.91E-05 |
| 9 | GO:0009654: photosystem II oxygen evolving complex | 1.91E-05 |
| 10 | GO:0009523: photosystem II | 6.22E-05 |
| 11 | GO:0019898: extrinsic component of membrane | 6.22E-05 |
| 12 | GO:0030529: intracellular ribonucleoprotein complex | 1.20E-04 |
| 13 | GO:0009782: photosystem I antenna complex | 1.25E-04 |
| 14 | GO:0009534: chloroplast thylakoid | 1.41E-04 |
| 15 | GO:0030981: cortical microtubule cytoskeleton | 2.90E-04 |
| 16 | GO:0030095: chloroplast photosystem II | 3.14E-04 |
| 17 | GO:0030076: light-harvesting complex | 3.52E-04 |
| 18 | GO:0009532: plastid stroma | 5.28E-04 |
| 19 | GO:0009706: chloroplast inner membrane | 7.83E-04 |
| 20 | GO:0009508: plastid chromosome | 4.86E-03 |
| 21 | GO:0000312: plastid small ribosomal subunit | 5.28E-03 |
| 22 | GO:0005875: microtubule associated complex | 6.15E-03 |
| 23 | GO:0010287: plastoglobule | 7.07E-03 |
| 24 | GO:0005871: kinesin complex | 9.60E-03 |
| 25 | GO:0009536: plastid | 1.02E-02 |
| 26 | GO:0009522: photosystem I | 1.12E-02 |
| 27 | GO:0010319: stromule | 1.48E-02 |
| 28 | GO:0009295: nucleoid | 1.48E-02 |
| 29 | GO:0005874: microtubule | 1.92E-02 |
| 30 | GO:0031969: chloroplast membrane | 1.99E-02 |