co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G42100

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009715: chalcone biosynthetic process	0.00E+00
2	GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene	0.00E+00
3	GO:0060416: response to growth hormone	0.00E+00
4	GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome	0.00E+00
5	GO:0015822: ornithine transport	0.00E+00
6	GO:0080167: response to karrikin	6.10E-09
7	GO:0010224: response to UV-B	6.57E-06
8	GO:0009813: flavonoid biosynthetic process	2.33E-05
9	GO:0006633: fatty acid biosynthetic process	4.23E-05
10	GO:0045489: pectin biosynthetic process	9.76E-05
11	GO:1902265: abscisic acid homeostasis	1.73E-04
12	GO:0046244: salicylic acid catabolic process	1.73E-04
13	GO:0006723: cuticle hydrocarbon biosynthetic process	1.73E-04
14	GO:0006659: phosphatidylserine biosynthetic process	1.73E-04
15	GO:0048438: floral whorl development	1.73E-04
16	GO:0000066: mitochondrial ornithine transport	1.73E-04
17	GO:0016119: carotene metabolic process	1.73E-04
18	GO:0009416: response to light stimulus	2.55E-04
19	GO:0051555: flavonol biosynthetic process	2.85E-04
20	GO:0000038: very long-chain fatty acid metabolic process	3.31E-04
21	GO:0009629: response to gravity	3.92E-04
22	GO:0000719: photoreactive repair	3.92E-04
23	GO:0010541: acropetal auxin transport	3.92E-04
24	GO:0010220: positive regulation of vernalization response	3.92E-04
25	GO:0080148: negative regulation of response to water deprivation	3.92E-04
26	GO:1900386: positive regulation of flavonol biosynthetic process	3.92E-04
27	GO:0030036: actin cytoskeleton organization	4.32E-04
28	GO:0048768: root hair cell tip growth	4.87E-04
29	GO:0043447: alkane biosynthetic process	6.40E-04
30	GO:0031022: nuclear migration along microfilament	6.40E-04
31	GO:0051016: barbed-end actin filament capping	9.13E-04
32	GO:0010148: transpiration	9.13E-04
33	GO:0009800: cinnamic acid biosynthetic process	9.13E-04
34	GO:0009650: UV protection	9.13E-04
35	GO:0006168: adenine salvage	9.13E-04
36	GO:0006166: purine ribonucleoside salvage	9.13E-04
37	GO:0009411: response to UV	9.60E-04
38	GO:0019722: calcium-mediated signaling	1.04E-03
39	GO:0071555: cell wall organization	1.07E-03
40	GO:0042335: cuticle development	1.21E-03
41	GO:0006749: glutathione metabolic process	1.21E-03
42	GO:0006546: glycine catabolic process	1.21E-03
43	GO:0006021: inositol biosynthetic process	1.21E-03
44	GO:0000271: polysaccharide biosynthetic process	1.21E-03
45	GO:0009902: chloroplast relocation	1.21E-03
46	GO:0019464: glycine decarboxylation via glycine cleavage system	1.21E-03
47	GO:0009765: photosynthesis, light harvesting	1.21E-03
48	GO:0009741: response to brassinosteroid	1.30E-03
49	GO:0009733: response to auxin	1.35E-03
50	GO:0009791: post-embryonic development	1.50E-03
51	GO:0016120: carotene biosynthetic process	1.54E-03
52	GO:0016123: xanthophyll biosynthetic process	1.54E-03
53	GO:0044209: AMP salvage	1.54E-03
54	GO:0032876: negative regulation of DNA endoreduplication	1.54E-03
55	GO:0071554: cell wall organization or biogenesis	1.60E-03
56	GO:0010583: response to cyclopentenone	1.70E-03
57	GO:0006559: L-phenylalanine catabolic process	1.89E-03
58	GO:0000060: protein import into nucleus, translocation	1.89E-03
59	GO:0009635: response to herbicide	1.89E-03
60	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.89E-03
61	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.89E-03
62	GO:0007267: cell-cell signaling	2.05E-03
63	GO:0045926: negative regulation of growth	2.27E-03
64	GO:0010076: maintenance of floral meristem identity	2.27E-03
65	GO:0017148: negative regulation of translation	2.27E-03
66	GO:0009903: chloroplast avoidance movement	2.27E-03
67	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.27E-03
68	GO:0010077: maintenance of inflorescence meristem identity	2.27E-03
69	GO:0051510: regulation of unidimensional cell growth	2.67E-03
70	GO:0007623: circadian rhythm	2.71E-03
71	GO:0008610: lipid biosynthetic process	3.09E-03
72	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.09E-03
73	GO:0009819: drought recovery	3.09E-03
74	GO:0009704: de-etiolation	3.09E-03
75	GO:0045010: actin nucleation	3.09E-03
76	GO:0031540: regulation of anthocyanin biosynthetic process	3.09E-03
77	GO:0052543: callose deposition in cell wall	3.09E-03
78	GO:0007389: pattern specification process	3.54E-03
79	GO:0009699: phenylpropanoid biosynthetic process	3.54E-03
80	GO:0022900: electron transport chain	3.54E-03
81	GO:0016051: carbohydrate biosynthetic process	3.78E-03
82	GO:0009637: response to blue light	3.78E-03
83	GO:0009056: catabolic process	4.00E-03
84	GO:0000902: cell morphogenesis	4.00E-03
85	GO:0048268: clathrin coat assembly	4.49E-03
86	GO:0010380: regulation of chlorophyll biosynthetic process	4.49E-03
87	GO:0030154: cell differentiation	4.72E-03
88	GO:0043069: negative regulation of programmed cell death	4.99E-03
89	GO:0010192: mucilage biosynthetic process	4.99E-03
90	GO:0042546: cell wall biogenesis	5.06E-03
91	GO:0009698: phenylpropanoid metabolic process	5.52E-03
92	GO:0000272: polysaccharide catabolic process	5.52E-03
93	GO:0016024: CDP-diacylglycerol biosynthetic process	6.06E-03
94	GO:0010582: floral meristem determinacy	6.06E-03
95	GO:0015706: nitrate transport	6.06E-03
96	GO:0016925: protein sumoylation	6.06E-03
97	GO:0030048: actin filament-based movement	6.61E-03
98	GO:0046274: lignin catabolic process	6.61E-03
99	GO:0018107: peptidyl-threonine phosphorylation	6.61E-03
100	GO:0010143: cutin biosynthetic process	7.20E-03
101	GO:0010540: basipetal auxin transport	7.20E-03
102	GO:0009825: multidimensional cell growth	7.79E-03
103	GO:0010167: response to nitrate	7.79E-03
104	GO:0010025: wax biosynthetic process	8.41E-03
105	GO:0009833: plant-type primary cell wall biogenesis	8.41E-03
106	GO:0006833: water transport	8.41E-03
107	GO:0010187: negative regulation of seed germination	9.03E-03
108	GO:0005992: trehalose biosynthetic process	9.03E-03
109	GO:0006468: protein phosphorylation	9.19E-03
110	GO:0007017: microtubule-based process	9.69E-03
111	GO:0009768: photosynthesis, light harvesting in photosystem I	9.69E-03
112	GO:0009742: brassinosteroid mediated signaling pathway	9.89E-03
113	GO:0051260: protein homooligomerization	1.03E-02
114	GO:0010584: pollen exine formation	1.24E-02
115	GO:0016117: carotenoid biosynthetic process	1.32E-02
116	GO:0000226: microtubule cytoskeleton organization	1.39E-02
117	GO:0034220: ion transmembrane transport	1.39E-02
118	GO:0010051: xylem and phloem pattern formation	1.39E-02
119	GO:0015991: ATP hydrolysis coupled proton transport	1.39E-02
120	GO:0009414: response to water deprivation	1.43E-02
121	GO:0015986: ATP synthesis coupled proton transport	1.54E-02
122	GO:0040008: regulation of growth	1.54E-02
123	GO:0009734: auxin-activated signaling pathway	1.57E-02
124	GO:0008654: phospholipid biosynthetic process	1.62E-02
125	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.70E-02
126	GO:0048235: pollen sperm cell differentiation	1.78E-02
127	GO:0007264: small GTPase mediated signal transduction	1.78E-02
128	GO:0009739: response to gibberellin	1.81E-02
129	GO:1901657: glycosyl compound metabolic process	1.87E-02
130	GO:0016126: sterol biosynthetic process	2.21E-02
131	GO:0010029: regulation of seed germination	2.30E-02
132	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.30E-02
133	GO:0051301: cell division	2.35E-02
134	GO:0042128: nitrate assimilation	2.39E-02
135	GO:0016311: dephosphorylation	2.58E-02
136	GO:0030244: cellulose biosynthetic process	2.67E-02
137	GO:0018298: protein-chromophore linkage	2.67E-02
138	GO:0009860: pollen tube growth	2.70E-02
139	GO:0009832: plant-type cell wall biogenesis	2.77E-02
140	GO:0009407: toxin catabolic process	2.87E-02
141	GO:0010218: response to far red light	2.87E-02
142	GO:0048527: lateral root development	2.96E-02
143	GO:0010119: regulation of stomatal movement	2.96E-02
144	GO:0007568: aging	2.96E-02
145	GO:0009910: negative regulation of flower development	2.96E-02
146	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.22E-02
147	GO:0006839: mitochondrial transport	3.47E-02
148	GO:0006897: endocytosis	3.58E-02
149	GO:0010114: response to red light	3.79E-02
150	GO:0009926: auxin polar transport	3.79E-02
151	GO:0009636: response to toxic substance	4.12E-02
152	GO:0031347: regulation of defense response	4.34E-02
153	GO:0000165: MAPK cascade	4.34E-02
154	GO:0006629: lipid metabolic process	4.57E-02
155	GO:0009809: lignin biosynthetic process	4.68E-02
156	GO:0009736: cytokinin-activated signaling pathway	4.68E-02
157	GO:0051603: proteolysis involved in cellular protein catabolic process	4.80E-02
158	GO:0006857: oligopeptide transport	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity	0.00E+00
2	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
3	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
4	GO:0003904: deoxyribodipyrimidine photo-lyase activity	0.00E+00
5	GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity	0.00E+00
6	GO:0016719: carotene 7,8-desaturase activity	0.00E+00
7	GO:0045430: chalcone isomerase activity	2.30E-05
8	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	2.79E-05
9	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	2.79E-05
10	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	2.79E-05
11	GO:0080132: fatty acid alpha-hydroxylase activity	1.73E-04
12	GO:0010313: phytochrome binding	1.73E-04
13	GO:0045486: naringenin 3-dioxygenase activity	1.73E-04
14	GO:0030797: 24-methylenesterol C-methyltransferase activity	1.73E-04
15	GO:0000064: L-ornithine transmembrane transporter activity	3.92E-04
16	GO:0004512: inositol-3-phosphate synthase activity	3.92E-04
17	GO:0048531: beta-1,3-galactosyltransferase activity	3.92E-04
18	GO:0010291: carotene beta-ring hydroxylase activity	3.92E-04
19	GO:0045548: phenylalanine ammonia-lyase activity	6.40E-04
20	GO:0003913: DNA photolyase activity	6.40E-04
21	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	8.83E-04
22	GO:0048027: mRNA 5'-UTR binding	9.13E-04
23	GO:0003999: adenine phosphoribosyltransferase activity	9.13E-04
24	GO:0001872: (1->3)-beta-D-glucan binding	9.13E-04
25	GO:0004375: glycine dehydrogenase (decarboxylating) activity	9.13E-04
26	GO:0046527: glucosyltransferase activity	1.21E-03
27	GO:0080032: methyl jasmonate esterase activity	1.21E-03
28	GO:0016757: transferase activity, transferring glycosyl groups	1.32E-03
29	GO:0031386: protein tag	1.54E-03
30	GO:0009922: fatty acid elongase activity	1.54E-03
31	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.89E-03
32	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.89E-03
33	GO:0080030: methyl indole-3-acetate esterase activity	1.89E-03
34	GO:0016759: cellulose synthase activity	1.93E-03
35	GO:0016413: O-acetyltransferase activity	2.17E-03
36	GO:0016161: beta-amylase activity	2.27E-03
37	GO:0004672: protein kinase activity	2.30E-03
38	GO:0016621: cinnamoyl-CoA reductase activity	2.67E-03
39	GO:0016207: 4-coumarate-CoA ligase activity	4.00E-03
40	GO:0030955: potassium ion binding	4.49E-03
41	GO:0015112: nitrate transmembrane transporter activity	4.49E-03
42	GO:0004743: pyruvate kinase activity	4.49E-03
43	GO:0004805: trehalose-phosphatase activity	4.99E-03
44	GO:0005545: 1-phosphatidylinositol binding	4.99E-03
45	GO:0046961: proton-transporting ATPase activity, rotational mechanism	5.52E-03
46	GO:0016491: oxidoreductase activity	6.57E-03
47	GO:0051119: sugar transmembrane transporter activity	7.79E-03
48	GO:0031409: pigment binding	8.41E-03
49	GO:0031418: L-ascorbic acid binding	9.03E-03
50	GO:0016746: transferase activity, transferring acyl groups	9.61E-03
51	GO:0051087: chaperone binding	9.69E-03
52	GO:0004176: ATP-dependent peptidase activity	1.03E-02
53	GO:0009055: electron carrier activity	1.11E-02
54	GO:0016758: transferase activity, transferring hexosyl groups	1.14E-02
55	GO:0016760: cellulose synthase (UDP-forming) activity	1.17E-02
56	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.33E-02
57	GO:0030276: clathrin binding	1.47E-02
58	GO:0001085: RNA polymerase II transcription factor binding	1.47E-02
59	GO:0019901: protein kinase binding	1.62E-02
60	GO:0004518: nuclease activity	1.78E-02
61	GO:0051015: actin filament binding	1.87E-02
62	GO:0005524: ATP binding	1.90E-02
63	GO:0016791: phosphatase activity	1.95E-02
64	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.04E-02
65	GO:0008237: metallopeptidase activity	2.04E-02
66	GO:0005200: structural constituent of cytoskeleton	2.04E-02
67	GO:0015250: water channel activity	2.21E-02
68	GO:0016168: chlorophyll binding	2.30E-02
69	GO:0004674: protein serine/threonine kinase activity	2.40E-02
70	GO:0046982: protein heterodimerization activity	2.46E-02
71	GO:0030247: polysaccharide binding	2.48E-02
72	GO:0102483: scopolin beta-glucosidase activity	2.48E-02
73	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.58E-02
74	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.87E-02
75	GO:0004222: metalloendopeptidase activity	2.87E-02
76	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	2.96E-02
77	GO:0008422: beta-glucosidase activity	3.37E-02
78	GO:0004364: glutathione transferase activity	3.68E-02
79	GO:0004185: serine-type carboxypeptidase activity	3.79E-02
80	GO:0042803: protein homodimerization activity	3.89E-02
81	GO:0004871: signal transducer activity	3.89E-02
82	GO:0051537: 2 iron, 2 sulfur cluster binding	4.01E-02
83	GO:0015293: symporter activity	4.12E-02
84	GO:0016298: lipase activity	4.80E-02
85	GO:0005506: iron ion binding	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0046658: anchored component of plasma membrane	8.66E-06
2	GO:0005794: Golgi apparatus	1.41E-04
3	GO:0009506: plasmodesma	3.52E-04
4	GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain	3.92E-04
5	GO:0009505: plant-type cell wall	4.52E-04
6	GO:0009509: chromoplast	6.40E-04
7	GO:0042406: extrinsic component of endoplasmic reticulum membrane	6.40E-04
8	GO:0031225: anchored component of membrane	6.43E-04
9	GO:0005886: plasma membrane	8.24E-04
10	GO:0005960: glycine cleavage complex	9.13E-04
11	GO:0000139: Golgi membrane	1.95E-03
12	GO:0016021: integral component of membrane	2.08E-03
13	GO:0048471: perinuclear region of cytoplasm	5.52E-03
14	GO:0005753: mitochondrial proton-transporting ATP synthase complex	7.79E-03
15	GO:0030076: light-harvesting complex	7.79E-03
16	GO:0005905: clathrin-coated pit	1.03E-02
17	GO:0030136: clathrin-coated vesicle	1.32E-02
18	GO:0009522: photosystem I	1.54E-02
19	GO:0009705: plant-type vacuole membrane	1.62E-02
20	GO:0009523: photosystem II	1.62E-02
21	GO:0005783: endoplasmic reticulum	1.87E-02
22	GO:0005667: transcription factor complex	2.39E-02
23	GO:0005789: endoplasmic reticulum membrane	2.78E-02
24	GO:0000786: nucleosome	3.06E-02
25	GO:0005856: cytoskeleton	4.12E-02
26	GO:0005743: mitochondrial inner membrane	4.26E-02