co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G41460

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015822: ornithine transport	0.00E+00
2	GO:0016048: detection of temperature stimulus	0.00E+00
3	GO:0006216: cytidine catabolic process	0.00E+00
4	GO:0080094: response to trehalose-6-phosphate	0.00E+00
5	GO:0009715: chalcone biosynthetic process	0.00E+00
6	GO:0010336: gibberellic acid homeostasis	0.00E+00
7	GO:0009946: proximal/distal axis specification	0.00E+00
8	GO:0080167: response to karrikin	8.85E-06
9	GO:0009813: flavonoid biosynthetic process	1.12E-05
10	GO:0008152: metabolic process	3.36E-05
11	GO:0009411: response to UV	3.42E-05
12	GO:0042026: protein refolding	5.10E-05
13	GO:0006458: 'de novo' protein folding	5.10E-05
14	GO:0019510: S-adenosylhomocysteine catabolic process	1.33E-04
15	GO:1901349: glucosinolate transport	1.33E-04
16	GO:0090449: phloem glucosinolate loading	1.33E-04
17	GO:0000032: cell wall mannoprotein biosynthetic process	1.33E-04
18	GO:0032025: response to cobalt ion	1.33E-04
19	GO:0006169: adenosine salvage	1.33E-04
20	GO:0006659: phosphatidylserine biosynthetic process	1.33E-04
21	GO:0048438: floral whorl development	1.33E-04
22	GO:0000066: mitochondrial ornithine transport	1.33E-04
23	GO:0051555: flavonol biosynthetic process	1.96E-04
24	GO:0010218: response to far red light	2.26E-04
25	GO:0015712: hexose phosphate transport	3.07E-04
26	GO:0009629: response to gravity	3.07E-04
27	GO:0019388: galactose catabolic process	3.07E-04
28	GO:0033353: S-adenosylmethionine cycle	3.07E-04
29	GO:0010220: positive regulation of vernalization response	3.07E-04
30	GO:0010020: chloroplast fission	3.42E-04
31	GO:0010338: leaf formation	5.06E-04
32	GO:0033591: response to L-ascorbic acid	5.06E-04
33	GO:2000082: regulation of L-ascorbic acid biosynthetic process	5.06E-04
34	GO:0035436: triose phosphate transmembrane transport	5.06E-04
35	GO:0006651: diacylglycerol biosynthetic process	5.06E-04
36	GO:0061077: chaperone-mediated protein folding	5.72E-04
37	GO:0007005: mitochondrion organization	6.25E-04
38	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	7.21E-04
39	GO:0009963: positive regulation of flavonoid biosynthetic process	7.24E-04
40	GO:0009590: detection of gravity	7.24E-04
41	GO:0009298: GDP-mannose biosynthetic process	7.24E-04
42	GO:0006342: chromatin silencing	9.22E-04
43	GO:0009765: photosynthesis, light harvesting	9.59E-04
44	GO:0045088: regulation of innate immune response	9.59E-04
45	GO:0015713: phosphoglycerate transport	9.59E-04
46	GO:0006021: inositol biosynthetic process	9.59E-04
47	GO:0009694: jasmonic acid metabolic process	9.59E-04
48	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.13E-03
49	GO:0044209: AMP salvage	1.21E-03
50	GO:0010236: plastoquinone biosynthetic process	1.21E-03
51	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.49E-03
52	GO:0070814: hydrogen sulfide biosynthetic process	1.49E-03
53	GO:0000060: protein import into nucleus, translocation	1.49E-03
54	GO:0009643: photosynthetic acclimation	1.49E-03
55	GO:0009972: cytidine deamination	1.49E-03
56	GO:0010077: maintenance of inflorescence meristem identity	1.78E-03
57	GO:0009094: L-phenylalanine biosynthetic process	1.78E-03
58	GO:0010076: maintenance of floral meristem identity	1.78E-03
59	GO:0017148: negative regulation of translation	1.78E-03
60	GO:0009739: response to gibberellin	1.98E-03
61	GO:0006826: iron ion transport	2.09E-03
62	GO:0006880: intracellular sequestering of iron ion	2.09E-03
63	GO:0007155: cell adhesion	2.42E-03
64	GO:0005978: glycogen biosynthetic process	2.42E-03
65	GO:0031540: regulation of anthocyanin biosynthetic process	2.42E-03
66	GO:0009908: flower development	2.51E-03
67	GO:0009733: response to auxin	2.62E-03
68	GO:0022900: electron transport chain	2.77E-03
69	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	2.77E-03
70	GO:0048193: Golgi vesicle transport	2.77E-03
71	GO:0044030: regulation of DNA methylation	2.77E-03
72	GO:0010114: response to red light	3.40E-03
73	GO:0009926: auxin polar transport	3.40E-03
74	GO:0010018: far-red light signaling pathway	3.50E-03
75	GO:0008356: asymmetric cell division	3.50E-03
76	GO:0010192: mucilage biosynthetic process	3.89E-03
77	GO:0009970: cellular response to sulfate starvation	3.89E-03
78	GO:0000103: sulfate assimilation	3.89E-03
79	GO:0009698: phenylpropanoid metabolic process	4.30E-03
80	GO:0019684: photosynthesis, light reaction	4.30E-03
81	GO:0006879: cellular iron ion homeostasis	4.30E-03
82	GO:0000272: polysaccharide catabolic process	4.30E-03
83	GO:0048229: gametophyte development	4.30E-03
84	GO:0010582: floral meristem determinacy	4.72E-03
85	GO:0010224: response to UV-B	4.72E-03
86	GO:0006857: oligopeptide transport	4.88E-03
87	GO:0009909: regulation of flower development	5.05E-03
88	GO:0009767: photosynthetic electron transport chain	5.15E-03
89	GO:0006006: glucose metabolic process	5.15E-03
90	GO:0009934: regulation of meristem structural organization	5.60E-03
91	GO:0010223: secondary shoot formation	5.60E-03
92	GO:0010039: response to iron ion	6.06E-03
93	GO:0009833: plant-type primary cell wall biogenesis	6.53E-03
94	GO:0009944: polarity specification of adaxial/abaxial axis	7.01E-03
95	GO:0009753: response to jasmonic acid	7.01E-03
96	GO:0019953: sexual reproduction	7.51E-03
97	GO:0009695: jasmonic acid biosynthetic process	7.51E-03
98	GO:0009768: photosynthesis, light harvesting in photosystem I	7.51E-03
99	GO:0031408: oxylipin biosynthetic process	8.02E-03
100	GO:0006366: transcription from RNA polymerase II promoter	8.02E-03
101	GO:0071555: cell wall organization	8.53E-03
102	GO:0006730: one-carbon metabolic process	8.55E-03
103	GO:0009790: embryo development	9.48E-03
104	GO:0010584: pollen exine formation	9.63E-03
105	GO:0006284: base-excision repair	9.63E-03
106	GO:0016117: carotenoid biosynthetic process	1.02E-02
107	GO:0006633: fatty acid biosynthetic process	1.02E-02
108	GO:0042335: cuticle development	1.08E-02
109	GO:0007623: circadian rhythm	1.12E-02
110	GO:0008360: regulation of cell shape	1.13E-02
111	GO:0007059: chromosome segregation	1.19E-02
112	GO:0009791: post-embryonic development	1.25E-02
113	GO:0019252: starch biosynthetic process	1.25E-02
114	GO:0008654: phospholipid biosynthetic process	1.25E-02
115	GO:0055072: iron ion homeostasis	1.25E-02
116	GO:0071554: cell wall organization or biogenesis	1.32E-02
117	GO:0000302: response to reactive oxygen species	1.32E-02
118	GO:0009416: response to light stimulus	1.33E-02
119	GO:0009611: response to wounding	1.37E-02
120	GO:0010583: response to cyclopentenone	1.38E-02
121	GO:0016032: viral process	1.38E-02
122	GO:0019761: glucosinolate biosynthetic process	1.38E-02
123	GO:1901657: glycosyl compound metabolic process	1.44E-02
124	GO:0016125: sterol metabolic process	1.51E-02
125	GO:0009828: plant-type cell wall loosening	1.51E-02
126	GO:0006810: transport	1.52E-02
127	GO:0005975: carbohydrate metabolic process	1.60E-02
128	GO:0046686: response to cadmium ion	1.66E-02
129	GO:0009615: response to virus	1.71E-02
130	GO:0042128: nitrate assimilation	1.85E-02
131	GO:0048573: photoperiodism, flowering	1.92E-02
132	GO:0006950: response to stress	1.92E-02
133	GO:0030244: cellulose biosynthetic process	2.06E-02
134	GO:0018298: protein-chromophore linkage	2.06E-02
135	GO:0009832: plant-type cell wall biogenesis	2.14E-02
136	GO:0009407: toxin catabolic process	2.21E-02
137	GO:0010119: regulation of stomatal movement	2.29E-02
138	GO:0010043: response to zinc ion	2.29E-02
139	GO:0009867: jasmonic acid mediated signaling pathway	2.44E-02
140	GO:0009637: response to blue light	2.44E-02
141	GO:0015979: photosynthesis	2.47E-02
142	GO:0034599: cellular response to oxidative stress	2.52E-02
143	GO:0045892: negative regulation of transcription, DNA-templated	2.63E-02
144	GO:0006839: mitochondrial transport	2.68E-02
145	GO:0006631: fatty acid metabolic process	2.76E-02
146	GO:0009744: response to sucrose	2.92E-02
147	GO:0009751: response to salicylic acid	3.14E-02
148	GO:0009636: response to toxic substance	3.18E-02
149	GO:0009965: leaf morphogenesis	3.18E-02
150	GO:0000165: MAPK cascade	3.35E-02
151	GO:0030154: cell differentiation	3.58E-02
152	GO:0006486: protein glycosylation	3.62E-02
153	GO:0043086: negative regulation of catalytic activity	4.07E-02

Rank	GO Term	Adjusted P value
1	GO:0047844: deoxycytidine deaminase activity	0.00E+00
2	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
3	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
4	GO:0030795: jasmonate O-methyltransferase activity	0.00E+00
5	GO:0102078: methyl jasmonate methylesterase activity	0.00E+00
6	GO:0045430: chalcone isomerase activity	1.47E-05
7	GO:0046982: protein heterodimerization activity	5.89E-05
8	GO:0004013: adenosylhomocysteinase activity	1.33E-04
9	GO:0010313: phytochrome binding	1.33E-04
10	GO:0004001: adenosine kinase activity	1.33E-04
11	GO:0004476: mannose-6-phosphate isomerase activity	1.33E-04
12	GO:0090448: glucosinolate:proton symporter activity	1.33E-04
13	GO:0045486: naringenin 3-dioxygenase activity	1.33E-04
14	GO:0016757: transferase activity, transferring glycosyl groups	1.42E-04
15	GO:0044183: protein binding involved in protein folding	2.29E-04
16	GO:0008194: UDP-glycosyltransferase activity	2.96E-04
17	GO:0051879: Hsp90 protein binding	3.07E-04
18	GO:0080102: 3-methylthiopropyl glucosinolate S-oxygenase activity	3.07E-04
19	GO:0004312: fatty acid synthase activity	3.07E-04
20	GO:0080104: 5-methylthiopropyl glucosinolate S-oxygenase activity	3.07E-04
21	GO:0000064: L-ornithine transmembrane transporter activity	3.07E-04
22	GO:0004512: inositol-3-phosphate synthase activity	3.07E-04
23	GO:0080106: 7-methylthiopropyl glucosinolate S-oxygenase activity	3.07E-04
24	GO:0004614: phosphoglucomutase activity	3.07E-04
25	GO:0016868: intramolecular transferase activity, phosphotransferases	3.07E-04
26	GO:0080103: 4-methylthiopropyl glucosinolate S-oxygenase activity	5.06E-04
27	GO:0004781: sulfate adenylyltransferase (ATP) activity	5.06E-04
28	GO:0071917: triose-phosphate transmembrane transporter activity	5.06E-04
29	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	5.06E-04
30	GO:0004322: ferroxidase activity	7.24E-04
31	GO:0048027: mRNA 5'-UTR binding	7.24E-04
32	GO:0080107: 8-methylthiopropyl glucosinolate S-oxygenase activity	7.24E-04
33	GO:0008199: ferric iron binding	7.24E-04
34	GO:0080044: quercetin 7-O-glucosyltransferase activity	7.77E-04
35	GO:0080043: quercetin 3-O-glucosyltransferase activity	7.77E-04
36	GO:0004664: prephenate dehydratase activity	9.59E-04
37	GO:0046527: glucosyltransferase activity	9.59E-04
38	GO:0015120: phosphoglycerate transmembrane transporter activity	9.59E-04
39	GO:0047769: arogenate dehydratase activity	9.59E-04
40	GO:0045431: flavonol synthase activity	1.21E-03
41	GO:0008725: DNA-3-methyladenine glycosylase activity	1.21E-03
42	GO:0016759: cellulose synthase activity	1.36E-03
43	GO:0080030: methyl indole-3-acetate esterase activity	1.49E-03
44	GO:0004784: superoxide dismutase activity	1.49E-03
45	GO:0102229: amylopectin maltohydrolase activity	1.49E-03
46	GO:0016597: amino acid binding	1.52E-03
47	GO:0008195: phosphatidate phosphatase activity	1.78E-03
48	GO:0004126: cytidine deaminase activity	1.78E-03
49	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.78E-03
50	GO:0016161: beta-amylase activity	1.78E-03
51	GO:0102425: myricetin 3-O-glucosyltransferase activity	2.09E-03
52	GO:0102360: daphnetin 3-O-glucosyltransferase activity	2.09E-03
53	GO:0043295: glutathione binding	2.09E-03
54	GO:0047893: flavonol 3-O-glucosyltransferase activity	2.42E-03
55	GO:0004714: transmembrane receptor protein tyrosine kinase activity	2.42E-03
56	GO:0003843: 1,3-beta-D-glucan synthase activity	2.77E-03
57	GO:0016207: 4-coumarate-CoA ligase activity	3.13E-03
58	GO:0042803: protein homodimerization activity	5.21E-03
59	GO:0004175: endopeptidase activity	5.60E-03
60	GO:0051082: unfolded protein binding	6.48E-03
61	GO:0031409: pigment binding	6.53E-03
62	GO:0031418: L-ascorbic acid binding	7.01E-03
63	GO:0001046: core promoter sequence-specific DNA binding	7.01E-03
64	GO:0035251: UDP-glucosyltransferase activity	8.02E-03
65	GO:0016760: cellulose synthase (UDP-forming) activity	9.08E-03
66	GO:0004499: N,N-dimethylaniline monooxygenase activity	9.63E-03
67	GO:0005215: transporter activity	9.93E-03
68	GO:0015297: antiporter activity	1.07E-02
69	GO:0005355: glucose transmembrane transporter activity	1.19E-02
70	GO:0004518: nuclease activity	1.38E-02
71	GO:0004672: protein kinase activity	1.52E-02
72	GO:0016413: O-acetyltransferase activity	1.64E-02
73	GO:0016788: hydrolase activity, acting on ester bonds	1.77E-02
74	GO:0016168: chlorophyll binding	1.78E-02
75	GO:0102483: scopolin beta-glucosidase activity	1.92E-02
76	GO:0004497: monooxygenase activity	2.16E-02
77	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	2.29E-02
78	GO:0005515: protein binding	2.58E-02
79	GO:0008422: beta-glucosidase activity	2.60E-02
80	GO:0016787: hydrolase activity	2.67E-02
81	GO:0050661: NADP binding	2.68E-02
82	GO:0004364: glutathione transferase activity	2.84E-02
83	GO:0051537: 2 iron, 2 sulfur cluster binding	3.09E-02
84	GO:0005198: structural molecule activity	3.18E-02
85	GO:0003677: DNA binding	3.28E-02
86	GO:0004674: protein serine/threonine kinase activity	3.34E-02
87	GO:0051287: NAD binding	3.35E-02
88	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.17E-02
89	GO:0004650: polygalacturonase activity	4.36E-02
90	GO:0016874: ligase activity	4.45E-02

Rank	GO Term	Adjusted P value
1	GO:0000940: condensed chromosome outer kinetochore	0.00E+00
2	GO:0097708: intracellular vesicle	0.00E+00
3	GO:0009570: chloroplast stroma	7.47E-05
4	GO:0009941: chloroplast envelope	9.53E-05
5	GO:0009344: nitrite reductase complex [NAD(P)H]	1.33E-04
6	GO:0009507: chloroplast	2.37E-04
7	GO:0000786: nucleosome	2.57E-04
8	GO:0042406: extrinsic component of endoplasmic reticulum membrane	5.06E-04
9	GO:0000790: nuclear chromatin	7.98E-04
10	GO:0031225: anchored component of membrane	1.35E-03
11	GO:0010319: stromule	1.44E-03
12	GO:0000793: condensed chromosome	1.49E-03
13	GO:0005886: plasma membrane	2.12E-03
14	GO:0000148: 1,3-beta-D-glucan synthase complex	2.77E-03
15	GO:0042644: chloroplast nucleoid	3.13E-03
16	GO:0005876: spindle microtubule	3.50E-03
17	GO:0009579: thylakoid	3.84E-03
18	GO:0030095: chloroplast photosystem II	5.60E-03
19	GO:0030076: light-harvesting complex	6.06E-03
20	GO:0043231: intracellular membrane-bounded organelle	7.26E-03
21	GO:0009654: photosystem II oxygen evolving complex	7.51E-03
22	GO:0009705: plant-type vacuole membrane	1.12E-02
23	GO:0009522: photosystem I	1.19E-02
24	GO:0009523: photosystem II	1.25E-02
25	GO:0019898: extrinsic component of membrane	1.25E-02
26	GO:0009295: nucleoid	1.57E-02
27	GO:0009534: chloroplast thylakoid	1.69E-02
28	GO:0009707: chloroplast outer membrane	2.06E-02
29	GO:0009536: plastid	4.15E-02
30	GO:0016021: integral component of membrane	4.50E-02