co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G41410

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071260: cellular response to mechanical stimulus	0.00E+00
2	GO:0070070: proton-transporting V-type ATPase complex assembly	0.00E+00
3	GO:0043171: peptide catabolic process	0.00E+00
4	GO:0010378: temperature compensation of the circadian clock	0.00E+00
5	GO:0000390: spliceosomal complex disassembly	0.00E+00
6	GO:0030644: cellular chloride ion homeostasis	0.00E+00
7	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
8	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
9	GO:0071311: cellular response to acetate	0.00E+00
10	GO:0009768: photosynthesis, light harvesting in photosystem I	3.56E-19
11	GO:0018298: protein-chromophore linkage	8.83E-12
12	GO:0009645: response to low light intensity stimulus	8.93E-09
13	GO:0015979: photosynthesis	1.50E-08
14	GO:0009644: response to high light intensity	1.48E-07
15	GO:0010218: response to far red light	1.17E-06
16	GO:0009769: photosynthesis, light harvesting in photosystem II	1.48E-06
17	GO:0009637: response to blue light	1.70E-06
18	GO:0009416: response to light stimulus	5.97E-06
19	GO:0009409: response to cold	2.91E-05
20	GO:0010114: response to red light	6.32E-05
21	GO:0015812: gamma-aminobutyric acid transport	1.82E-04
22	GO:0080167: response to karrikin	2.36E-04
23	GO:0010289: homogalacturonan biosynthetic process	4.10E-04
24	GO:0006883: cellular sodium ion homeostasis	4.10E-04
25	GO:1902884: positive regulation of response to oxidative stress	4.10E-04
26	GO:0030259: lipid glycosylation	4.10E-04
27	GO:0042542: response to hydrogen peroxide	6.28E-04
28	GO:0042256: mature ribosome assembly	6.69E-04
29	GO:1902448: positive regulation of shade avoidance	6.69E-04
30	GO:0006598: polyamine catabolic process	6.69E-04
31	GO:0071230: cellular response to amino acid stimulus	6.69E-04
32	GO:1901562: response to paraquat	6.69E-04
33	GO:0090630: activation of GTPase activity	6.69E-04
34	GO:0070072: vacuolar proton-transporting V-type ATPase complex assembly	9.55E-04
35	GO:0010601: positive regulation of auxin biosynthetic process	9.55E-04
36	GO:0009963: positive regulation of flavonoid biosynthetic process	9.55E-04
37	GO:0031936: negative regulation of chromatin silencing	9.55E-04
38	GO:1901332: negative regulation of lateral root development	9.55E-04
39	GO:0009735: response to cytokinin	1.14E-03
40	GO:0015743: malate transport	1.27E-03
41	GO:0009765: photosynthesis, light harvesting	1.27E-03
42	GO:2000306: positive regulation of photomorphogenesis	1.27E-03
43	GO:1901002: positive regulation of response to salt stress	1.27E-03
44	GO:0030104: water homeostasis	1.27E-03
45	GO:0006646: phosphatidylethanolamine biosynthetic process	1.27E-03
46	GO:0009687: abscisic acid metabolic process	1.27E-03
47	GO:0042752: regulation of circadian rhythm	1.49E-03
48	GO:0000380: alternative mRNA splicing, via spliceosome	1.61E-03
49	GO:0048578: positive regulation of long-day photoperiodism, flowering	1.61E-03
50	GO:0045962: positive regulation of development, heterochronic	1.98E-03
51	GO:0007035: vacuolar acidification	1.98E-03
52	GO:0000741: karyogamy	1.98E-03
53	GO:0009635: response to herbicide	1.98E-03
54	GO:0010286: heat acclimation	2.19E-03
55	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.38E-03
56	GO:0071333: cellular response to glucose stimulus	2.38E-03
57	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.60E-03
58	GO:0048437: floral organ development	2.80E-03
59	GO:0010196: nonphotochemical quenching	2.80E-03
60	GO:0080111: DNA demethylation	2.80E-03
61	GO:0006333: chromatin assembly or disassembly	2.80E-03
62	GO:0010038: response to metal ion	2.80E-03
63	GO:0007155: cell adhesion	3.24E-03
64	GO:0009061: anaerobic respiration	3.24E-03
65	GO:0006491: N-glycan processing	3.24E-03
66	GO:0010078: maintenance of root meristem identity	3.24E-03
67	GO:0016051: carbohydrate biosynthetic process	4.05E-03
68	GO:0034765: regulation of ion transmembrane transport	4.20E-03
69	GO:0090333: regulation of stomatal closure	4.20E-03
70	GO:0030042: actin filament depolymerization	4.71E-03
71	GO:0010629: negative regulation of gene expression	5.24E-03
72	GO:0010162: seed dormancy process	5.24E-03
73	GO:0009970: cellular response to sulfate starvation	5.24E-03
74	GO:0006995: cellular response to nitrogen starvation	5.24E-03
75	GO:0055062: phosphate ion homeostasis	5.24E-03
76	GO:0009688: abscisic acid biosynthetic process	5.24E-03
77	GO:0008643: carbohydrate transport	5.63E-03
78	GO:0006816: calcium ion transport	5.79E-03
79	GO:0018119: peptidyl-cysteine S-nitrosylation	5.79E-03
80	GO:0035556: intracellular signal transduction	6.14E-03
81	GO:0000165: MAPK cascade	6.31E-03
82	GO:0016925: protein sumoylation	6.35E-03
83	GO:0042538: hyperosmotic salinity response	6.54E-03
84	GO:0009767: photosynthetic electron transport chain	6.94E-03
85	GO:2000012: regulation of auxin polar transport	6.94E-03
86	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	6.94E-03
87	GO:0050826: response to freezing	6.94E-03
88	GO:0018107: peptidyl-threonine phosphorylation	6.94E-03
89	GO:0010200: response to chitin	7.07E-03
90	GO:0010207: photosystem II assembly	7.55E-03
91	GO:0007015: actin filament organization	7.55E-03
92	GO:0010540: basipetal auxin transport	7.55E-03
93	GO:0090351: seedling development	8.18E-03
94	GO:0006874: cellular calcium ion homeostasis	1.02E-02
95	GO:0009695: jasmonic acid biosynthetic process	1.02E-02
96	GO:0048511: rhythmic process	1.09E-02
97	GO:0010431: seed maturation	1.09E-02
98	GO:0006334: nucleosome assembly	1.09E-02
99	GO:0009269: response to desiccation	1.09E-02
100	GO:0003333: amino acid transmembrane transport	1.09E-02
101	GO:0071215: cellular response to abscisic acid stimulus	1.23E-02
102	GO:0010227: floral organ abscission	1.23E-02
103	GO:0045492: xylan biosynthetic process	1.31E-02
104	GO:0019722: calcium-mediated signaling	1.31E-02
105	GO:0009058: biosynthetic process	1.32E-02
106	GO:0009651: response to salt stress	1.32E-02
107	GO:0070417: cellular response to cold	1.38E-02
108	GO:0015991: ATP hydrolysis coupled proton transport	1.46E-02
109	GO:0034220: ion transmembrane transport	1.46E-02
110	GO:0045489: pectin biosynthetic process	1.54E-02
111	GO:0010197: polar nucleus fusion	1.54E-02
112	GO:0015986: ATP synthesis coupled proton transport	1.62E-02
113	GO:0006814: sodium ion transport	1.62E-02
114	GO:0007165: signal transduction	1.64E-02
115	GO:0009556: microsporogenesis	1.70E-02
116	GO:0007623: circadian rhythm	1.74E-02
117	GO:0006891: intra-Golgi vesicle-mediated transport	1.79E-02
118	GO:0006635: fatty acid beta-oxidation	1.79E-02
119	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.94E-02
120	GO:1901657: glycosyl compound metabolic process	1.96E-02
121	GO:0009908: flower development	2.02E-02
122	GO:0010252: auxin homeostasis	2.05E-02
123	GO:0006914: autophagy	2.05E-02
124	GO:0010468: regulation of gene expression	2.07E-02
125	GO:0048573: photoperiodism, flowering	2.61E-02
126	GO:0006950: response to stress	2.61E-02
127	GO:0016049: cell growth	2.71E-02
128	GO:0055085: transmembrane transport	3.10E-02
129	GO:0016567: protein ubiquitination	3.11E-02
130	GO:0010119: regulation of stomatal movement	3.11E-02
131	GO:0010043: response to zinc ion	3.11E-02
132	GO:0048366: leaf development	3.16E-02
133	GO:0045087: innate immune response	3.32E-02
134	GO:0009640: photomorphogenesis	3.98E-02
135	GO:0009926: auxin polar transport	3.98E-02
136	GO:0000209: protein polyubiquitination	4.09E-02
137	GO:0006886: intracellular protein transport	4.11E-02
138	GO:0009965: leaf morphogenesis	4.32E-02
139	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.56E-02
140	GO:0006812: cation transport	4.68E-02
141	GO:0006629: lipid metabolic process	4.89E-02
142	GO:0009809: lignin biosynthetic process	4.92E-02
143	GO:0009585: red, far-red light phototransduction	4.92E-02
144	GO:0006813: potassium ion transport	4.92E-02
145	GO:0009737: response to abscisic acid	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
2	GO:0004306: ethanolamine-phosphate cytidylyltransferase activity	0.00E+00
3	GO:0047205: quinate O-hydroxycinnamoyltransferase activity	0.00E+00
4	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
5	GO:0047172: shikimate O-hydroxycinnamoyltransferase activity	0.00E+00
6	GO:0004567: beta-mannosidase activity	0.00E+00
7	GO:0080082: esculin beta-glucosidase activity	0.00E+00
8	GO:0015276: ligand-gated ion channel activity	0.00E+00
9	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
10	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
11	GO:0050511: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity	0.00E+00
12	GO:0019912: cyclin-dependent protein kinase activating kinase activity	0.00E+00
13	GO:1990446: U1 snRNP binding	0.00E+00
14	GO:0031409: pigment binding	2.17E-17
15	GO:0016168: chlorophyll binding	4.74E-14
16	GO:0005253: anion channel activity	2.51E-05
17	GO:0005515: protein binding	8.90E-05
18	GO:0010013: N-1-naphthylphthalamic acid binding	1.82E-04
19	GO:0080079: cellobiose glucosidase activity	1.82E-04
20	GO:0008692: 3-hydroxybutyryl-CoA epimerase activity	1.82E-04
21	GO:0008066: glutamate receptor activity	1.82E-04
22	GO:0070006: metalloaminopeptidase activity	1.82E-04
23	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	1.82E-04
24	GO:0005244: voltage-gated ion channel activity	1.82E-04
25	GO:0004177: aminopeptidase activity	3.54E-04
26	GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity	4.10E-04
27	GO:0015180: L-alanine transmembrane transporter activity	4.10E-04
28	GO:0019948: SUMO activating enzyme activity	6.69E-04
29	GO:0004096: catalase activity	6.69E-04
30	GO:0046592: polyamine oxidase activity	6.69E-04
31	GO:0004707: MAP kinase activity	8.65E-04
32	GO:0015189: L-lysine transmembrane transporter activity	9.55E-04
33	GO:0015181: arginine transmembrane transporter activity	9.55E-04
34	GO:0030527: structural constituent of chromatin	9.55E-04
35	GO:0004165: dodecenoyl-CoA delta-isomerase activity	9.55E-04
36	GO:0004300: enoyl-CoA hydratase activity	9.55E-04
37	GO:0046872: metal ion binding	1.26E-03
38	GO:0005313: L-glutamate transmembrane transporter activity	1.27E-03
39	GO:0042277: peptide binding	1.27E-03
40	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	1.61E-03
41	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.61E-03
42	GO:0004629: phospholipase C activity	1.98E-03
43	GO:0015562: efflux transmembrane transporter activity	1.98E-03
44	GO:0051117: ATPase binding	1.98E-03
45	GO:0005247: voltage-gated chloride channel activity	1.98E-03
46	GO:0004435: phosphatidylinositol phospholipase C activity	2.38E-03
47	GO:0015140: malate transmembrane transporter activity	2.80E-03
48	GO:0004525: ribonuclease III activity	3.24E-03
49	GO:0005267: potassium channel activity	3.71E-03
50	GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity	3.71E-03
51	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	4.20E-03
52	GO:0015020: glucuronosyltransferase activity	5.24E-03
53	GO:0047372: acylglycerol lipase activity	5.79E-03
54	GO:0046961: proton-transporting ATPase activity, rotational mechanism	5.79E-03
55	GO:0005198: structural molecule activity	5.85E-03
56	GO:0005262: calcium channel activity	6.94E-03
57	GO:0005315: inorganic phosphate transmembrane transporter activity	6.94E-03
58	GO:0061630: ubiquitin protein ligase activity	7.22E-03
59	GO:0031624: ubiquitin conjugating enzyme binding	7.55E-03
60	GO:0008131: primary amine oxidase activity	7.55E-03
61	GO:0003712: transcription cofactor activity	8.18E-03
62	GO:0005217: intracellular ligand-gated ion channel activity	8.18E-03
63	GO:0004970: ionotropic glutamate receptor activity	8.18E-03
64	GO:0008324: cation transmembrane transporter activity	1.02E-02
65	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.09E-02
66	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.16E-02
67	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.29E-02
68	GO:0008514: organic anion transmembrane transporter activity	1.31E-02
69	GO:0015297: antiporter activity	1.66E-02
70	GO:0005351: sugar:proton symporter activity	1.69E-02
71	GO:0008270: zinc ion binding	1.78E-02
72	GO:0008375: acetylglucosaminyltransferase activity	2.51E-02
73	GO:0102483: scopolin beta-glucosidase activity	2.61E-02
74	GO:0046982: protein heterodimerization activity	2.64E-02
75	GO:0016301: kinase activity	2.84E-02
76	GO:0003682: chromatin binding	2.84E-02
77	GO:0005096: GTPase activator activity	2.91E-02
78	GO:0016740: transferase activity	2.95E-02
79	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.01E-02
80	GO:0050897: cobalt ion binding	3.11E-02
81	GO:0008233: peptidase activity	3.27E-02
82	GO:0004497: monooxygenase activity	3.33E-02
83	GO:0003677: DNA binding	3.40E-02
84	GO:0003993: acid phosphatase activity	3.43E-02
85	GO:0008422: beta-glucosidase activity	3.54E-02
86	GO:0042393: histone binding	3.65E-02
87	GO:0015293: symporter activity	4.32E-02
88	GO:0004722: protein serine/threonine phosphatase activity	4.36E-02

Rank	GO Term	Adjusted P value
1	GO:0031981: nuclear lumen	0.00E+00
2	GO:0071008: U2-type post-mRNA release spliceosomal complex	0.00E+00
3	GO:0030076: light-harvesting complex	2.37E-15
4	GO:0009522: photosystem I	2.59E-15
5	GO:0010287: plastoglobule	2.12E-12
6	GO:0009579: thylakoid	5.10E-10
7	GO:0009534: chloroplast thylakoid	7.90E-09
8	GO:0009535: chloroplast thylakoid membrane	9.10E-08
9	GO:0009523: photosystem II	1.27E-07
10	GO:0009941: chloroplast envelope	8.69E-07
11	GO:0016021: integral component of membrane	2.89E-06
12	GO:0009517: PSII associated light-harvesting complex II	2.51E-05
13	GO:0042651: thylakoid membrane	4.33E-05
14	GO:0009507: chloroplast	9.40E-05
15	GO:0009783: photosystem II antenna complex	1.82E-04
16	GO:0012510: trans-Golgi network transport vesicle membrane	1.82E-04
17	GO:0000786: nucleosome	4.52E-04
18	GO:0005802: trans-Golgi network	7.79E-04
19	GO:0005622: intracellular	9.55E-04
20	GO:0009898: cytoplasmic side of plasma membrane	1.27E-03
21	GO:0032586: protein storage vacuole membrane	1.27E-03
22	GO:0005776: autophagosome	1.27E-03
23	GO:0016471: vacuolar proton-transporting V-type ATPase complex	1.27E-03
24	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	1.61E-03
25	GO:0005777: peroxisome	1.70E-03
26	GO:0034707: chloride channel complex	1.98E-03
27	GO:0016020: membrane	2.47E-03
28	GO:0009533: chloroplast stromal thylakoid	2.80E-03
29	GO:0000151: ubiquitin ligase complex	3.20E-03
30	GO:0000326: protein storage vacuole	3.71E-03
31	GO:0031090: organelle membrane	4.20E-03
32	GO:0010494: cytoplasmic stress granule	4.20E-03
33	GO:0031307: integral component of mitochondrial outer membrane	6.35E-03
34	GO:0030095: chloroplast photosystem II	7.55E-03
35	GO:0005795: Golgi stack	8.18E-03
36	GO:0005783: endoplasmic reticulum	8.54E-03
37	GO:0009654: photosystem II oxygen evolving complex	1.02E-02
38	GO:0031410: cytoplasmic vesicle	1.16E-02
39	GO:0005773: vacuole	1.22E-02
40	GO:0015629: actin cytoskeleton	1.23E-02
41	GO:0009543: chloroplast thylakoid lumen	1.25E-02
42	GO:0005768: endosome	1.40E-02
43	GO:0005794: Golgi apparatus	1.53E-02
44	GO:0019898: extrinsic component of membrane	1.70E-02
45	GO:0000785: chromatin	1.87E-02
46	GO:0000932: P-body	2.32E-02
47	GO:0000139: Golgi membrane	2.58E-02
48	GO:0000325: plant-type vacuole	3.11E-02
49	GO:0031977: thylakoid lumen	3.76E-02
50	GO:0031966: mitochondrial membrane	4.68E-02
51	GO:0005618: cell wall	4.78E-02