GO Enrichment Analysis of Co-expressed Genes with
AT5G40950
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 2 | GO:0070455: positive regulation of heme biosynthetic process | 0.00E+00 |
| 3 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 4 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 5 | GO:0006412: translation | 1.03E-19 |
| 6 | GO:0032544: plastid translation | 2.02E-11 |
| 7 | GO:0042254: ribosome biogenesis | 1.28E-10 |
| 8 | GO:0015995: chlorophyll biosynthetic process | 1.64E-09 |
| 9 | GO:0009735: response to cytokinin | 1.57E-08 |
| 10 | GO:0010027: thylakoid membrane organization | 6.13E-08 |
| 11 | GO:0015979: photosynthesis | 3.16E-07 |
| 12 | GO:0090391: granum assembly | 2.29E-06 |
| 13 | GO:0009658: chloroplast organization | 3.20E-05 |
| 14 | GO:0010196: nonphotochemical quenching | 4.92E-05 |
| 15 | GO:0006353: DNA-templated transcription, termination | 6.41E-05 |
| 16 | GO:0043489: RNA stabilization | 1.08E-04 |
| 17 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.08E-04 |
| 18 | GO:1904964: positive regulation of phytol biosynthetic process | 1.08E-04 |
| 19 | GO:0042371: vitamin K biosynthetic process | 1.08E-04 |
| 20 | GO:0071588: hydrogen peroxide mediated signaling pathway | 1.08E-04 |
| 21 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.52E-04 |
| 22 | GO:0006729: tetrahydrobiopterin biosynthetic process | 2.52E-04 |
| 23 | GO:0015675: nickel cation transport | 4.19E-04 |
| 24 | GO:0071492: cellular response to UV-A | 4.19E-04 |
| 25 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 5.16E-04 |
| 26 | GO:0033014: tetrapyrrole biosynthetic process | 6.01E-04 |
| 27 | GO:0006986: response to unfolded protein | 6.01E-04 |
| 28 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 6.01E-04 |
| 29 | GO:0051085: chaperone mediated protein folding requiring cofactor | 6.01E-04 |
| 30 | GO:0010239: chloroplast mRNA processing | 6.01E-04 |
| 31 | GO:0006021: inositol biosynthetic process | 7.98E-04 |
| 32 | GO:0071486: cellular response to high light intensity | 7.98E-04 |
| 33 | GO:0009790: embryo development | 9.73E-04 |
| 34 | GO:0009828: plant-type cell wall loosening | 1.03E-03 |
| 35 | GO:1901259: chloroplast rRNA processing | 1.47E-03 |
| 36 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.47E-03 |
| 37 | GO:0017148: negative regulation of translation | 1.47E-03 |
| 38 | GO:0010019: chloroplast-nucleus signaling pathway | 1.47E-03 |
| 39 | GO:0009817: defense response to fungus, incompatible interaction | 1.58E-03 |
| 40 | GO:0006400: tRNA modification | 1.73E-03 |
| 41 | GO:0009772: photosynthetic electron transport in photosystem II | 1.73E-03 |
| 42 | GO:0009631: cold acclimation | 1.82E-03 |
| 43 | GO:0042255: ribosome assembly | 2.00E-03 |
| 44 | GO:0006605: protein targeting | 2.00E-03 |
| 45 | GO:0034599: cellular response to oxidative stress | 2.08E-03 |
| 46 | GO:0009409: response to cold | 2.18E-03 |
| 47 | GO:0006526: arginine biosynthetic process | 2.28E-03 |
| 48 | GO:0006783: heme biosynthetic process | 2.57E-03 |
| 49 | GO:0006457: protein folding | 2.78E-03 |
| 50 | GO:0006779: porphyrin-containing compound biosynthetic process | 2.88E-03 |
| 51 | GO:0006782: protoporphyrinogen IX biosynthetic process | 3.20E-03 |
| 52 | GO:0045036: protein targeting to chloroplast | 3.20E-03 |
| 53 | GO:0009664: plant-type cell wall organization | 3.20E-03 |
| 54 | GO:0006949: syncytium formation | 3.20E-03 |
| 55 | GO:0009773: photosynthetic electron transport in photosystem I | 3.53E-03 |
| 56 | GO:0009073: aromatic amino acid family biosynthetic process | 3.53E-03 |
| 57 | GO:0043085: positive regulation of catalytic activity | 3.53E-03 |
| 58 | GO:0018119: peptidyl-cysteine S-nitrosylation | 3.53E-03 |
| 59 | GO:0009767: photosynthetic electron transport chain | 4.23E-03 |
| 60 | GO:0010207: photosystem II assembly | 4.59E-03 |
| 61 | GO:0042742: defense response to bacterium | 5.49E-03 |
| 62 | GO:0009793: embryo development ending in seed dormancy | 5.56E-03 |
| 63 | GO:0000027: ribosomal large subunit assembly | 5.75E-03 |
| 64 | GO:0042744: hydrogen peroxide catabolic process | 6.92E-03 |
| 65 | GO:0006633: fatty acid biosynthetic process | 7.64E-03 |
| 66 | GO:0009306: protein secretion | 7.87E-03 |
| 67 | GO:0009451: RNA modification | 8.59E-03 |
| 68 | GO:0080022: primary root development | 8.79E-03 |
| 69 | GO:0008033: tRNA processing | 8.79E-03 |
| 70 | GO:0006520: cellular amino acid metabolic process | 9.26E-03 |
| 71 | GO:0006662: glycerol ether metabolic process | 9.26E-03 |
| 72 | GO:0015986: ATP synthesis coupled proton transport | 9.74E-03 |
| 73 | GO:0009791: post-embryonic development | 1.02E-02 |
| 74 | GO:0008654: phospholipid biosynthetic process | 1.02E-02 |
| 75 | GO:0000302: response to reactive oxygen species | 1.07E-02 |
| 76 | GO:0016032: viral process | 1.12E-02 |
| 77 | GO:0032502: developmental process | 1.12E-02 |
| 78 | GO:0009826: unidimensional cell growth | 1.25E-02 |
| 79 | GO:0006888: ER to Golgi vesicle-mediated transport | 1.56E-02 |
| 80 | GO:0080167: response to karrikin | 1.62E-02 |
| 81 | GO:0018298: protein-chromophore linkage | 1.68E-02 |
| 82 | GO:0045454: cell redox homeostasis | 1.94E-02 |
| 83 | GO:0045087: innate immune response | 1.99E-02 |
| 84 | GO:0030001: metal ion transport | 2.18E-02 |
| 85 | GO:0009644: response to high light intensity | 2.52E-02 |
| 86 | GO:0009809: lignin biosynthetic process | 2.94E-02 |
| 87 | GO:0006364: rRNA processing | 2.94E-02 |
| 88 | GO:0051603: proteolysis involved in cellular protein catabolic process | 3.02E-02 |
| 89 | GO:0006396: RNA processing | 3.86E-02 |
| 90 | GO:0009416: response to light stimulus | 4.23E-02 |
| 91 | GO:0055114: oxidation-reduction process | 4.45E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity | 0.00E+00 |
| 2 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 3 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 4 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 5 | GO:0019843: rRNA binding | 4.45E-25 |
| 6 | GO:0003735: structural constituent of ribosome | 1.57E-21 |
| 7 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 6.05E-07 |
| 8 | GO:0016851: magnesium chelatase activity | 5.42E-06 |
| 9 | GO:0043023: ribosomal large subunit binding | 5.42E-06 |
| 10 | GO:0043495: protein anchor | 1.03E-05 |
| 11 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 1.08E-04 |
| 12 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 1.08E-04 |
| 13 | GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity | 1.08E-04 |
| 14 | GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity | 1.08E-04 |
| 15 | GO:0004512: inositol-3-phosphate synthase activity | 2.52E-04 |
| 16 | GO:0016630: protochlorophyllide reductase activity | 2.52E-04 |
| 17 | GO:0015099: nickel cation transmembrane transporter activity | 2.52E-04 |
| 18 | GO:0008266: poly(U) RNA binding | 2.55E-04 |
| 19 | GO:0051087: chaperone binding | 3.94E-04 |
| 20 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 4.19E-04 |
| 21 | GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity | 4.19E-04 |
| 22 | GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity | 4.19E-04 |
| 23 | GO:0022891: substrate-specific transmembrane transporter activity | 5.16E-04 |
| 24 | GO:0008097: 5S rRNA binding | 6.01E-04 |
| 25 | GO:0051082: unfolded protein binding | 6.07E-04 |
| 26 | GO:0003723: RNA binding | 6.43E-04 |
| 27 | GO:0016836: hydro-lyase activity | 7.98E-04 |
| 28 | GO:0003959: NADPH dehydrogenase activity | 1.01E-03 |
| 29 | GO:0004130: cytochrome-c peroxidase activity | 1.23E-03 |
| 30 | GO:0016688: L-ascorbate peroxidase activity | 1.23E-03 |
| 31 | GO:0016168: chlorophyll binding | 1.29E-03 |
| 32 | GO:0051920: peroxiredoxin activity | 1.47E-03 |
| 33 | GO:0019899: enzyme binding | 1.73E-03 |
| 34 | GO:0004033: aldo-keto reductase (NADP) activity | 2.00E-03 |
| 35 | GO:0052747: sinapyl alcohol dehydrogenase activity | 2.00E-03 |
| 36 | GO:0016209: antioxidant activity | 2.00E-03 |
| 37 | GO:0047617: acyl-CoA hydrolase activity | 2.88E-03 |
| 38 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.97E-03 |
| 39 | GO:0008047: enzyme activator activity | 3.20E-03 |
| 40 | GO:0005507: copper ion binding | 3.22E-03 |
| 41 | GO:0045551: cinnamyl-alcohol dehydrogenase activity | 3.87E-03 |
| 42 | GO:0031072: heat shock protein binding | 4.23E-03 |
| 43 | GO:0005528: FK506 binding | 5.75E-03 |
| 44 | GO:0030570: pectate lyase activity | 7.42E-03 |
| 45 | GO:0003727: single-stranded RNA binding | 7.87E-03 |
| 46 | GO:0047134: protein-disulfide reductase activity | 8.32E-03 |
| 47 | GO:0008080: N-acetyltransferase activity | 9.26E-03 |
| 48 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 9.26E-03 |
| 49 | GO:0010181: FMN binding | 9.74E-03 |
| 50 | GO:0004791: thioredoxin-disulfide reductase activity | 9.74E-03 |
| 51 | GO:0003729: mRNA binding | 1.00E-02 |
| 52 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.18E-02 |
| 53 | GO:0008483: transaminase activity | 1.28E-02 |
| 54 | GO:0000287: magnesium ion binding | 1.28E-02 |
| 55 | GO:0004601: peroxidase activity | 1.30E-02 |
| 56 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.68E-02 |
| 57 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.18E-02 |
| 58 | GO:0004185: serine-type carboxypeptidase activity | 2.38E-02 |
| 59 | GO:0043621: protein self-association | 2.52E-02 |
| 60 | GO:0051287: NAD binding | 2.73E-02 |
| 61 | GO:0003690: double-stranded DNA binding | 3.02E-02 |
| 62 | GO:0016491: oxidoreductase activity | 3.17E-02 |
| 63 | GO:0016887: ATPase activity | 3.70E-02 |
| 64 | GO:0015035: protein disulfide oxidoreductase activity | 3.86E-02 |
| 65 | GO:0016829: lyase activity | 4.69E-02 |
| 66 | GO:0030170: pyridoxal phosphate binding | 4.78E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 2 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 4.98E-48 |
| 4 | GO:0009570: chloroplast stroma | 1.52E-45 |
| 5 | GO:0009941: chloroplast envelope | 1.16E-32 |
| 6 | GO:0005840: ribosome | 6.22E-20 |
| 7 | GO:0009579: thylakoid | 4.14E-16 |
| 8 | GO:0009535: chloroplast thylakoid membrane | 2.13E-14 |
| 9 | GO:0009534: chloroplast thylakoid | 7.52E-12 |
| 10 | GO:0010007: magnesium chelatase complex | 2.29E-06 |
| 11 | GO:0016020: membrane | 9.94E-05 |
| 12 | GO:0009547: plastid ribosome | 1.08E-04 |
| 13 | GO:0000311: plastid large ribosomal subunit | 1.96E-04 |
| 14 | GO:0000312: plastid small ribosomal subunit | 2.55E-04 |
| 15 | GO:0042651: thylakoid membrane | 3.94E-04 |
| 16 | GO:0015935: small ribosomal subunit | 4.33E-04 |
| 17 | GO:0009543: chloroplast thylakoid lumen | 8.04E-04 |
| 18 | GO:0009523: photosystem II | 8.05E-04 |
| 19 | GO:0010319: stromule | 1.09E-03 |
| 20 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 1.23E-03 |
| 21 | GO:0015934: large ribosomal subunit | 1.82E-03 |
| 22 | GO:0031977: thylakoid lumen | 2.36E-03 |
| 23 | GO:0022625: cytosolic large ribosomal subunit | 2.89E-03 |
| 24 | GO:0030095: chloroplast photosystem II | 4.59E-03 |
| 25 | GO:0043234: protein complex | 5.35E-03 |
| 26 | GO:0009654: photosystem II oxygen evolving complex | 6.15E-03 |
| 27 | GO:0009532: plastid stroma | 6.56E-03 |
| 28 | GO:0009536: plastid | 7.48E-03 |
| 29 | GO:0005759: mitochondrial matrix | 7.64E-03 |
| 30 | GO:0009505: plant-type cell wall | 7.72E-03 |
| 31 | GO:0022626: cytosolic ribosome | 8.69E-03 |
| 32 | GO:0019898: extrinsic component of membrane | 1.02E-02 |
| 33 | GO:0022627: cytosolic small ribosomal subunit | 1.11E-02 |
| 34 | GO:0009295: nucleoid | 1.28E-02 |
| 35 | GO:0030529: intracellular ribonucleoprotein complex | 1.39E-02 |
| 36 | GO:0005618: cell wall | 1.42E-02 |
| 37 | GO:0009706: chloroplast inner membrane | 3.78E-02 |
| 38 | GO:0010287: plastoglobule | 4.27E-02 |
| 39 | GO:0005623: cell | 4.52E-02 |