co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G39850

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010398: xylogalacturonan metabolic process	0.00E+00
2	GO:0006182: cGMP biosynthetic process	0.00E+00
3	GO:0043269: regulation of ion transport	0.00E+00
4	GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase	0.00E+00
5	GO:0000162: tryptophan biosynthetic process	5.17E-11
6	GO:0009617: response to bacterium	5.14E-10
7	GO:0009682: induced systemic resistance	1.05E-07
8	GO:0042742: defense response to bacterium	5.84E-07
9	GO:0052544: defense response by callose deposition in cell wall	8.67E-06
10	GO:0055114: oxidation-reduction process	1.33E-05
11	GO:0071456: cellular response to hypoxia	4.70E-05
12	GO:0009759: indole glucosinolate biosynthetic process	5.10E-05
13	GO:0009851: auxin biosynthetic process	1.09E-04
14	GO:0010120: camalexin biosynthetic process	1.53E-04
15	GO:0010726: positive regulation of hydrogen peroxide metabolic process	1.64E-04
16	GO:0009700: indole phytoalexin biosynthetic process	1.64E-04
17	GO:0080120: CAAX-box protein maturation	1.64E-04
18	GO:0071586: CAAX-box protein processing	1.64E-04
19	GO:0009623: response to parasitic fungus	1.64E-04
20	GO:0051245: negative regulation of cellular defense response	1.64E-04
21	GO:0090333: regulation of stomatal closure	1.87E-04
22	GO:0009817: defense response to fungus, incompatible interaction	2.93E-04
23	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	3.73E-04
24	GO:0015914: phospholipid transport	3.73E-04
25	GO:0002215: defense response to nematode	3.73E-04
26	GO:0006099: tricarboxylic acid cycle	4.24E-04
27	GO:1902626: assembly of large subunit precursor of preribosome	6.11E-04
28	GO:0000289: nuclear-transcribed mRNA poly(A) tail shortening	6.11E-04
29	GO:0051176: positive regulation of sulfur metabolic process	6.11E-04
30	GO:0042256: mature ribosome assembly	6.11E-04
31	GO:0046686: response to cadmium ion	6.26E-04
32	GO:0016226: iron-sulfur cluster assembly	8.26E-04
33	GO:0006612: protein targeting to membrane	8.73E-04
34	GO:0010116: positive regulation of abscisic acid biosynthetic process	8.73E-04
35	GO:0002239: response to oomycetes	8.73E-04
36	GO:0042273: ribosomal large subunit biogenesis	1.16E-03
37	GO:0010600: regulation of auxin biosynthetic process	1.16E-03
38	GO:0000460: maturation of 5.8S rRNA	1.16E-03
39	GO:0010107: potassium ion import	1.16E-03
40	GO:0048830: adventitious root development	1.16E-03
41	GO:0010363: regulation of plant-type hypersensitive response	1.16E-03
42	GO:0006090: pyruvate metabolic process	1.47E-03
43	GO:0006564: L-serine biosynthetic process	1.47E-03
44	GO:0007029: endoplasmic reticulum organization	1.47E-03
45	GO:0030308: negative regulation of cell growth	1.47E-03
46	GO:0002229: defense response to oomycetes	1.49E-03
47	GO:0006796: phosphate-containing compound metabolic process	1.80E-03
48	GO:1900425: negative regulation of defense response to bacterium	1.80E-03
49	GO:0006014: D-ribose metabolic process	1.80E-03
50	GO:0010942: positive regulation of cell death	1.80E-03
51	GO:0000470: maturation of LSU-rRNA	1.80E-03
52	GO:0000054: ribosomal subunit export from nucleus	2.17E-03
53	GO:1902074: response to salt	2.55E-03
54	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	2.55E-03
55	GO:0080027: response to herbivore	2.55E-03
56	GO:0009395: phospholipid catabolic process	2.55E-03
57	GO:0010311: lateral root formation	2.93E-03
58	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.95E-03
59	GO:0006102: isocitrate metabolic process	2.95E-03
60	GO:0009407: toxin catabolic process	3.07E-03
61	GO:0006526: arginine biosynthetic process	3.37E-03
62	GO:0009808: lignin metabolic process	3.37E-03
63	GO:0009699: phenylpropanoid biosynthetic process	3.37E-03
64	GO:0034765: regulation of ion transmembrane transport	3.81E-03
65	GO:0010112: regulation of systemic acquired resistance	3.81E-03
66	GO:0009051: pentose-phosphate shunt, oxidative branch	3.81E-03
67	GO:0006032: chitin catabolic process	4.75E-03
68	GO:0009688: abscisic acid biosynthetic process	4.75E-03
69	GO:0043069: negative regulation of programmed cell death	4.75E-03
70	GO:0009641: shade avoidance	4.75E-03
71	GO:0009636: response to toxic substance	5.09E-03
72	GO:0009723: response to ethylene	5.19E-03
73	GO:0000272: polysaccharide catabolic process	5.25E-03
74	GO:0030148: sphingolipid biosynthetic process	5.25E-03
75	GO:0009684: indoleacetic acid biosynthetic process	5.25E-03
76	GO:0002213: defense response to insect	5.77E-03
77	GO:0010105: negative regulation of ethylene-activated signaling pathway	5.77E-03
78	GO:0071365: cellular response to auxin stimulus	5.77E-03
79	GO:0010200: response to chitin	5.91E-03
80	GO:0006813: potassium ion transport	6.10E-03
81	GO:0044550: secondary metabolite biosynthetic process	6.30E-03
82	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	6.30E-03
83	GO:0006108: malate metabolic process	6.30E-03
84	GO:0006541: glutamine metabolic process	6.85E-03
85	GO:0042343: indole glucosinolate metabolic process	7.41E-03
86	GO:0006468: protein phosphorylation	7.76E-03
87	GO:0050832: defense response to fungus	7.94E-03
88	GO:0009863: salicylic acid mediated signaling pathway	8.59E-03
89	GO:0080147: root hair cell development	8.59E-03
90	GO:0048278: vesicle docking	9.84E-03
91	GO:0031408: oxylipin biosynthetic process	9.84E-03
92	GO:0016998: cell wall macromolecule catabolic process	9.84E-03
93	GO:0051260: protein homooligomerization	9.84E-03
94	GO:0009814: defense response, incompatible interaction	1.05E-02
95	GO:0071215: cellular response to abscisic acid stimulus	1.11E-02
96	GO:0071369: cellular response to ethylene stimulus	1.11E-02
97	GO:0009625: response to insect	1.11E-02
98	GO:0006012: galactose metabolic process	1.11E-02
99	GO:0010584: pollen exine formation	1.18E-02
100	GO:0009414: response to water deprivation	1.28E-02
101	GO:0042391: regulation of membrane potential	1.32E-02
102	GO:0009737: response to abscisic acid	1.34E-02
103	GO:0045489: pectin biosynthetic process	1.39E-02
104	GO:0006885: regulation of pH	1.39E-02
105	GO:0010197: polar nucleus fusion	1.39E-02
106	GO:0046323: glucose import	1.39E-02
107	GO:0048544: recognition of pollen	1.47E-02
108	GO:0061025: membrane fusion	1.47E-02
109	GO:0019252: starch biosynthetic process	1.54E-02
110	GO:0016032: viral process	1.70E-02
111	GO:0009630: gravitropism	1.70E-02
112	GO:0007166: cell surface receptor signaling pathway	1.72E-02
113	GO:0009735: response to cytokinin	1.72E-02
114	GO:0019760: glucosinolate metabolic process	1.86E-02
115	GO:0051607: defense response to virus	2.02E-02
116	GO:0009615: response to virus	2.10E-02
117	GO:0006906: vesicle fusion	2.27E-02
118	GO:0009627: systemic acquired resistance	2.27E-02
119	GO:0008219: cell death	2.54E-02
120	GO:0006952: defense response	2.62E-02
121	GO:0048767: root hair elongation	2.63E-02
122	GO:0009813: flavonoid biosynthetic process	2.63E-02
123	GO:0010119: regulation of stomatal movement	2.82E-02
124	GO:0010043: response to zinc ion	2.82E-02
125	GO:0009651: response to salt stress	2.88E-02
126	GO:0080167: response to karrikin	2.89E-02
127	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.99E-02
128	GO:0009867: jasmonic acid mediated signaling pathway	3.01E-02
129	GO:0046777: protein autophosphorylation	3.09E-02
130	GO:0006414: translational elongation	3.17E-02
131	GO:0006887: exocytosis	3.40E-02
132	GO:0010114: response to red light	3.60E-02
133	GO:0051707: response to other organism	3.60E-02
134	GO:0000209: protein polyubiquitination	3.70E-02
135	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.12E-02
136	GO:0016042: lipid catabolic process	4.14E-02
137	GO:0006812: cation transport	4.23E-02
138	GO:0009846: pollen germination	4.23E-02
139	GO:0006364: rRNA processing	4.45E-02

Rank	GO Term	Adjusted P value
1	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
2	GO:0010298: dihydrocamalexic acid decarboxylase activity	0.00E+00
3	GO:0015575: mannitol transmembrane transporter activity	0.00E+00
4	GO:0015591: D-ribose transmembrane transporter activity	0.00E+00
5	GO:0015148: D-xylose transmembrane transporter activity	0.00E+00
6	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
7	GO:0016603: glutaminyl-peptide cyclotransferase activity	0.00E+00
8	GO:0005365: myo-inositol transmembrane transporter activity	0.00E+00
9	GO:0015576: sorbitol transmembrane transporter activity	0.00E+00
10	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
11	GO:0052642: lysophosphatidic acid phosphatase activity	0.00E+00
12	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	3.59E-06
13	GO:0004049: anthranilate synthase activity	4.89E-06
14	GO:0005506: iron ion binding	5.12E-06
15	GO:0004834: tryptophan synthase activity	2.11E-05
16	GO:0020037: heme binding	3.01E-05
17	GO:0005496: steroid binding	3.42E-05
18	GO:0030246: carbohydrate binding	7.69E-05
19	GO:0019825: oxygen binding	8.96E-05
20	GO:0043295: glutathione binding	9.52E-05
21	GO:0015168: glycerol transmembrane transporter activity	1.64E-04
22	GO:2001147: camalexin binding	1.64E-04
23	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	1.64E-04
24	GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity	1.64E-04
25	GO:2001227: quercitrin binding	1.64E-04
26	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.64E-04
27	GO:0033984: indole-3-glycerol-phosphate lyase activity	1.64E-04
28	GO:0045309: protein phosphorylated amino acid binding	2.25E-04
29	GO:0019904: protein domain specific binding	3.08E-04
30	GO:0045140: inositol phosphoceramide synthase activity	3.73E-04
31	GO:0004042: acetyl-CoA:L-glutamate N-acetyltransferase activity	3.73E-04
32	GO:0003746: translation elongation factor activity	4.00E-04
33	GO:0008061: chitin binding	5.09E-04
34	GO:0004364: glutathione transferase activity	5.26E-04
35	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	6.11E-04
36	GO:0004383: guanylate cyclase activity	6.11E-04
37	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	6.11E-04
38	GO:0004324: ferredoxin-NADP+ reductase activity	6.11E-04
39	GO:0008430: selenium binding	6.11E-04
40	GO:0016301: kinase activity	6.20E-04
41	GO:0004540: ribonuclease activity	7.57E-04
42	GO:0004449: isocitrate dehydrogenase (NAD+) activity	8.73E-04
43	GO:0016656: monodehydroascorbate reductase (NADH) activity	8.73E-04
44	GO:0043023: ribosomal large subunit binding	8.73E-04
45	GO:0005354: galactose transmembrane transporter activity	8.73E-04
46	GO:0004674: protein serine/threonine kinase activity	9.16E-04
47	GO:0004470: malic enzyme activity	1.16E-03
48	GO:0004031: aldehyde oxidase activity	1.16E-03
49	GO:0050302: indole-3-acetaldehyde oxidase activity	1.16E-03
50	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	1.16E-03
51	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.16E-03
52	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	1.16E-03
53	GO:0016746: transferase activity, transferring acyl groups	1.29E-03
54	GO:0010181: FMN binding	1.30E-03
55	GO:0008948: oxaloacetate decarboxylase activity	1.47E-03
56	GO:0045431: flavonol synthase activity	1.47E-03
57	GO:0015145: monosaccharide transmembrane transporter activity	1.47E-03
58	GO:0004029: aldehyde dehydrogenase (NAD) activity	1.80E-03
59	GO:0035252: UDP-xylosyltransferase activity	1.80E-03
60	GO:0004747: ribokinase activity	2.17E-03
61	GO:0004656: procollagen-proline 4-dioxygenase activity	2.17E-03
62	GO:0005242: inward rectifier potassium channel activity	2.17E-03
63	GO:0051020: GTPase binding	2.17E-03
64	GO:0008143: poly(A) binding	2.55E-03
65	GO:0004620: phospholipase activity	2.55E-03
66	GO:0008865: fructokinase activity	2.95E-03
67	GO:0043022: ribosome binding	2.95E-03
68	GO:0004034: aldose 1-epimerase activity	2.95E-03
69	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.21E-03
70	GO:0071949: FAD binding	3.81E-03
71	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	4.27E-03
72	GO:0004713: protein tyrosine kinase activity	4.75E-03
73	GO:0004568: chitinase activity	4.75E-03
74	GO:0008047: enzyme activator activity	4.75E-03
75	GO:0050660: flavin adenine dinucleotide binding	5.19E-03
76	GO:0004129: cytochrome-c oxidase activity	5.25E-03
77	GO:0047372: acylglycerol lipase activity	5.25E-03
78	GO:0000175: 3'-5'-exoribonuclease activity	6.30E-03
79	GO:0004022: alcohol dehydrogenase (NAD) activity	6.30E-03
80	GO:0004535: poly(A)-specific ribonuclease activity	6.85E-03
81	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	6.85E-03
82	GO:0031624: ubiquitin conjugating enzyme binding	6.85E-03
83	GO:0004175: endopeptidase activity	6.85E-03
84	GO:0045735: nutrient reservoir activity	7.21E-03
85	GO:0005507: copper ion binding	7.80E-03
86	GO:0051536: iron-sulfur cluster binding	8.59E-03
87	GO:0031418: L-ascorbic acid binding	8.59E-03
88	GO:0008408: 3'-5' exonuclease activity	9.84E-03
89	GO:0015144: carbohydrate transmembrane transporter activity	1.30E-02
90	GO:0030551: cyclic nucleotide binding	1.32E-02
91	GO:0005451: monovalent cation:proton antiporter activity	1.32E-02
92	GO:0001085: RNA polymerase II transcription factor binding	1.39E-02
93	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.40E-02
94	GO:0015299: solute:proton antiporter activity	1.47E-02
95	GO:0005355: glucose transmembrane transporter activity	1.47E-02
96	GO:0005351: sugar:proton symporter activity	1.47E-02
97	GO:0016853: isomerase activity	1.47E-02
98	GO:0015385: sodium:proton antiporter activity	1.77E-02
99	GO:0016491: oxidoreductase activity	2.01E-02
100	GO:0030247: polysaccharide binding	2.36E-02
101	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.45E-02
102	GO:0008236: serine-type peptidase activity	2.45E-02
103	GO:0004222: metalloendopeptidase activity	2.72E-02
104	GO:0005524: ATP binding	2.73E-02
105	GO:0050897: cobalt ion binding	2.82E-02
106	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	2.82E-02
107	GO:0008233: peptidase activity	2.85E-02
108	GO:0004497: monooxygenase activity	2.89E-02
109	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.01E-02
110	GO:0003993: acid phosphatase activity	3.10E-02
111	GO:0000149: SNARE binding	3.20E-02
112	GO:0051539: 4 iron, 4 sulfur cluster binding	3.30E-02
113	GO:0005484: SNAP receptor activity	3.60E-02
114	GO:0042803: protein homodimerization activity	3.63E-02
115	GO:0051537: 2 iron, 2 sulfur cluster binding	3.81E-02
116	GO:0051287: NAD binding	4.12E-02
117	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.45E-02
118	GO:0009055: electron carrier activity	4.56E-02
119	GO:0016298: lipase activity	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	3.17E-07
2	GO:0016021: integral component of membrane	7.82E-06
3	GO:0016020: membrane	1.26E-05
4	GO:0005829: cytosol	2.48E-05
5	GO:0030687: preribosome, large subunit precursor	9.52E-05
6	GO:0045252: oxoglutarate dehydrogenase complex	1.64E-04
7	GO:0030014: CCR4-NOT complex	1.64E-04
8	GO:0032783: ELL-EAF complex	1.64E-04
9	GO:0005901: caveola	3.73E-04
10	GO:0005950: anthranilate synthase complex	3.73E-04
11	GO:0005853: eukaryotic translation elongation factor 1 complex	6.11E-04
12	GO:0005783: endoplasmic reticulum	8.08E-04
13	GO:0005746: mitochondrial respiratory chain	1.47E-03
14	GO:0045273: respiratory chain complex II	2.95E-03
15	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	2.95E-03
16	GO:0010494: cytoplasmic stress granule	3.81E-03
17	GO:0016604: nuclear body	4.27E-03
18	GO:0009506: plasmodesma	4.66E-03
19	GO:0009570: chloroplast stroma	5.28E-03
20	GO:0030176: integral component of endoplasmic reticulum membrane	7.41E-03
21	GO:0012505: endomembrane system	8.42E-03
22	GO:0005773: vacuole	8.98E-03
23	GO:0005774: vacuolar membrane	1.07E-02
24	GO:0005618: cell wall	1.39E-02
25	GO:0005667: transcription factor complex	2.27E-02
26	GO:0005789: endoplasmic reticulum membrane	2.50E-02
27	GO:0000151: ubiquitin ligase complex	2.54E-02
28	GO:0000325: plant-type vacuole	2.82E-02
29	GO:0031902: late endosome membrane	3.40E-02
30	GO:0031201: SNARE complex	3.40E-02
31	GO:0005635: nuclear envelope	4.67E-02