Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G39500

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006848: pyruvate transport0.00E+00
2GO:2000630: positive regulation of miRNA metabolic process0.00E+00
3GO:2000636: positive regulation of primary miRNA processing0.00E+00
4GO:0048867: stem cell fate determination0.00E+00
5GO:0051014: actin filament severing2.41E-05
6GO:0099636: cytoplasmic streaming2.41E-05
7GO:0031338: regulation of vesicle fusion2.41E-05
8GO:0006397: mRNA processing2.95E-05
9GO:0046898: response to cycloheximide6.16E-05
10GO:0010372: positive regulation of gibberellin biosynthetic process6.16E-05
11GO:0071217: cellular response to external biotic stimulus6.16E-05
12GO:0090630: activation of GTPase activity1.09E-04
13GO:0010272: response to silver ion1.09E-04
14GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'1.09E-04
15GO:0051604: protein maturation1.09E-04
16GO:0006624: vacuolar protein processing1.62E-04
17GO:0019048: modulation by virus of host morphology or physiology1.62E-04
18GO:0031936: negative regulation of chromatin silencing1.62E-04
19GO:0051601: exocyst localization1.62E-04
20GO:0051764: actin crosslink formation2.21E-04
21GO:0000919: cell plate assembly2.21E-04
22GO:0006751: glutathione catabolic process3.51E-04
23GO:0033962: cytoplasmic mRNA processing body assembly4.20E-04
24GO:0009846: pollen germination4.90E-04
25GO:0006401: RNA catabolic process4.92E-04
26GO:0048528: post-embryonic root development4.92E-04
27GO:0051693: actin filament capping4.92E-04
28GO:0080111: DNA demethylation4.92E-04
29GO:0006364: rRNA processing5.25E-04
30GO:0006875: cellular metal ion homeostasis5.68E-04
31GO:0006402: mRNA catabolic process5.68E-04
32GO:0006417: regulation of translation5.78E-04
33GO:0010093: specification of floral organ identity6.45E-04
34GO:0009932: cell tip growth6.45E-04
35GO:0060321: acceptance of pollen6.45E-04
36GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay7.25E-04
37GO:0030042: actin filament depolymerization8.07E-04
38GO:0000398: mRNA splicing, via spliceosome8.44E-04
39GO:0009845: seed germination9.80E-04
40GO:0009790: embryo development1.05E-03
41GO:0006890: retrograde vesicle-mediated transport, Golgi to ER1.07E-03
42GO:0010152: pollen maturation1.07E-03
43GO:0048467: gynoecium development1.25E-03
44GO:0034605: cellular response to heat1.25E-03
45GO:0007015: actin filament organization1.25E-03
46GO:0080188: RNA-directed DNA methylation1.35E-03
47GO:0042023: DNA endoreduplication1.45E-03
48GO:0007010: cytoskeleton organization1.55E-03
49GO:0051017: actin filament bundle assembly1.55E-03
50GO:0010073: meristem maintenance1.65E-03
51GO:0006874: cellular calcium ion homeostasis1.65E-03
52GO:0009686: gibberellin biosynthetic process1.98E-03
53GO:0009306: protein secretion2.10E-03
54GO:0051028: mRNA transport2.21E-03
55GO:0010501: RNA secondary structure unwinding2.33E-03
56GO:0006814: sodium ion transport2.57E-03
57GO:0006886: intracellular protein transport2.86E-03
58GO:0031047: gene silencing by RNA2.95E-03
59GO:0016032: viral process2.95E-03
60GO:0071805: potassium ion transmembrane transport3.35E-03
61GO:0001666: response to hypoxia3.63E-03
62GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.76E-03
63GO:0009816: defense response to bacterium, incompatible interaction3.76E-03
64GO:0006974: cellular response to DNA damage stimulus3.90E-03
65GO:0006888: ER to Golgi vesicle-mediated transport4.05E-03
66GO:0008219: cell death4.34E-03
67GO:0048481: plant ovule development4.34E-03
68GO:0048767: root hair elongation4.49E-03
69GO:0006887: exocytosis5.75E-03
70GO:0042546: cell wall biogenesis6.25E-03
71GO:0006813: potassium ion transport7.47E-03
72GO:0009909: regulation of flower development8.02E-03
73GO:0009620: response to fungus8.97E-03
74GO:0009624: response to nematode9.56E-03
75GO:0009742: brassinosteroid mediated signaling pathway9.96E-03
76GO:0016036: cellular response to phosphate starvation1.34E-02
77GO:0008380: RNA splicing1.59E-02
78GO:0009617: response to bacterium1.59E-02
79GO:0045944: positive regulation of transcription from RNA polymerase II promoter1.81E-02
80GO:0009826: unidimensional cell growth1.86E-02
81GO:0009860: pollen tube growth2.02E-02
82GO:0045892: negative regulation of transcription, DNA-templated2.57E-02
83GO:0016310: phosphorylation3.00E-02
84GO:0009651: response to salt stress4.10E-02
85GO:0009738: abscisic acid-activated signaling pathway4.33E-02
86GO:0045893: positive regulation of transcription, DNA-templated4.89E-02
RankGO TermAdjusted P value
1GO:0017168: 5-oxoprolinase (ATP-hydrolyzing) activity0.00E+00
2GO:0060090: binding, bridging0.00E+00
3GO:0008026: ATP-dependent helicase activity1.07E-06
4GO:0003729: mRNA binding4.59E-06
5GO:0000978: RNA polymerase II core promoter proximal region sequence-specific DNA binding2.41E-05
6GO:0030371: translation repressor activity2.41E-05
7GO:0001078: transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding6.16E-05
8GO:0019829: cation-transporting ATPase activity1.09E-04
9GO:0050833: pyruvate transmembrane transporter activity1.09E-04
10GO:0005096: GTPase activator activity2.52E-04
11GO:0017137: Rab GTPase binding2.84E-04
12GO:0003730: mRNA 3'-UTR binding4.20E-04
13GO:0005198: structural molecule activity4.40E-04
14GO:0015386: potassium:proton antiporter activity9.78E-04
15GO:0005089: Rho guanyl-nucleotide exchange factor activity9.78E-04
16GO:0019888: protein phosphatase regulator activity1.16E-03
17GO:0005388: calcium-transporting ATPase activity1.16E-03
18GO:0000175: 3'-5'-exoribonuclease activity1.16E-03
19GO:0003712: transcription cofactor activity1.35E-03
20GO:0003723: RNA binding1.42E-03
21GO:0015079: potassium ion transmembrane transporter activity1.65E-03
22GO:0004540: ribonuclease activity1.76E-03
23GO:0003676: nucleic acid binding2.33E-03
24GO:0030276: clathrin binding2.45E-03
25GO:0004518: nuclease activity2.95E-03
26GO:0051015: actin filament binding3.08E-03
27GO:0015385: sodium:proton antiporter activity3.08E-03
28GO:0004004: ATP-dependent RNA helicase activity4.05E-03
29GO:0000149: SNARE binding5.42E-03
30GO:0042393: histone binding5.59E-03
31GO:0003779: actin binding9.36E-03
32GO:0004386: helicase activity1.02E-02
33GO:0005524: ATP binding1.20E-02
34GO:0015297: antiporter activity1.36E-02
35GO:0046982: protein heterodimerization activity1.89E-02
36GO:0003682: chromatin binding1.99E-02
37GO:0005515: protein binding2.21E-02
38GO:0004497: monooxygenase activity2.23E-02
39GO:0016787: hydrolase activity2.62E-02
40GO:0004722: protein serine/threonine phosphatase activity2.71E-02
41GO:0016887: ATPase activity4.03E-02
42GO:0000166: nucleotide binding4.43E-02
RankGO TermAdjusted P value
1GO:0000932: P-body3.77E-06
2GO:0010494: cytoplasmic stress granule9.86E-06
3GO:0016442: RISC complex2.41E-05
4GO:0030126: COPI vesicle coat2.84E-04
5GO:0000178: exosome (RNase complex)2.84E-04
6GO:0005856: cytoskeleton4.40E-04
7GO:0005829: cytosol5.65E-04
8GO:0005681: spliceosomal complex6.17E-04
9GO:0015030: Cajal body8.07E-04
10GO:0000159: protein phosphatase type 2A complex9.78E-04
11GO:0005884: actin filament9.78E-04
12GO:0048471: perinuclear region of cytoplasm9.78E-04
13GO:0019013: viral nucleocapsid1.16E-03
14GO:0080008: Cul4-RING E3 ubiquitin ligase complex2.06E-03
15GO:0000145: exocyst2.95E-03
16GO:0030529: intracellular ribonucleoprotein complex3.63E-03
17GO:0005777: peroxisome6.90E-03
18GO:0005635: nuclear envelope7.84E-03
19GO:0012505: endomembrane system9.36E-03
20GO:0005622: intracellular1.07E-02
21GO:0005737: cytoplasm1.09E-02
22GO:0005654: nucleoplasm1.10E-02
23GO:0005623: cell1.14E-02
24GO:0009524: phragmoplast1.16E-02
25GO:0009506: plasmodesma1.37E-02
26GO:0000139: Golgi membrane1.65E-02
27GO:0005789: endoplasmic reticulum membrane1.87E-02
28GO:0005783: endoplasmic reticulum2.19E-02
29GO:0031969: chloroplast membrane2.23E-02
30GO:0005887: integral component of plasma membrane3.66E-02
Gene type



Gene DE type