co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G39320

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0007638: mechanosensory behavior	0.00E+00
2	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
3	GO:0010430: fatty acid omega-oxidation	0.00E+00
4	GO:0032544: plastid translation	4.07E-06
5	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	7.92E-05
6	GO:0019510: S-adenosylhomocysteine catabolic process	1.98E-04
7	GO:0010442: guard cell morphogenesis	1.98E-04
8	GO:1901599: (-)-pinoresinol biosynthetic process	1.98E-04
9	GO:0009828: plant-type cell wall loosening	2.27E-04
10	GO:0007267: cell-cell signaling	2.46E-04
11	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.14E-04
12	GO:0006949: syncytium formation	3.43E-04
13	GO:0010424: DNA methylation on cytosine within a CG sequence	4.43E-04
14	GO:0052541: plant-type cell wall cellulose metabolic process	4.43E-04
15	GO:0010069: zygote asymmetric cytokinesis in embryo sac	4.43E-04
16	GO:0044208: 'de novo' AMP biosynthetic process	4.43E-04
17	GO:0033353: S-adenosylmethionine cycle	4.43E-04
18	GO:2000123: positive regulation of stomatal complex development	4.43E-04
19	GO:0010020: chloroplast fission	5.82E-04
20	GO:0045490: pectin catabolic process	5.86E-04
21	GO:0090506: axillary shoot meristem initiation	7.22E-04
22	GO:0009664: plant-type cell wall organization	1.01E-03
23	GO:0006241: CTP biosynthetic process	1.03E-03
24	GO:0006165: nucleoside diphosphate phosphorylation	1.03E-03
25	GO:0006228: UTP biosynthetic process	1.03E-03
26	GO:0043572: plastid fission	1.03E-03
27	GO:0007231: osmosensory signaling pathway	1.03E-03
28	GO:0009826: unidimensional cell growth	1.07E-03
29	GO:0009294: DNA mediated transformation	1.14E-03
30	GO:0016117: carotenoid biosynthetic process	1.34E-03
31	GO:0009765: photosynthesis, light harvesting	1.37E-03
32	GO:0006183: GTP biosynthetic process	1.37E-03
33	GO:0000919: cell plate assembly	1.37E-03
34	GO:0033500: carbohydrate homeostasis	1.37E-03
35	GO:2000038: regulation of stomatal complex development	1.37E-03
36	GO:0006546: glycine catabolic process	1.37E-03
37	GO:0009956: radial pattern formation	1.37E-03
38	GO:0000271: polysaccharide biosynthetic process	1.45E-03
39	GO:0071555: cell wall organization	1.55E-03
40	GO:0010375: stomatal complex patterning	1.74E-03
41	GO:0016120: carotene biosynthetic process	1.74E-03
42	GO:0016123: xanthophyll biosynthetic process	1.74E-03
43	GO:0010583: response to cyclopentenone	2.04E-03
44	GO:0045454: cell redox homeostasis	2.05E-03
45	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.14E-03
46	GO:0006796: phosphate-containing compound metabolic process	2.14E-03
47	GO:0010190: cytochrome b6f complex assembly	2.14E-03
48	GO:0006869: lipid transport	2.36E-03
49	GO:0009955: adaxial/abaxial pattern specification	2.57E-03
50	GO:0010067: procambium histogenesis	2.57E-03
51	GO:1901259: chloroplast rRNA processing	2.57E-03
52	GO:0006694: steroid biosynthetic process	2.57E-03
53	GO:0048444: floral organ morphogenesis	2.57E-03
54	GO:0010555: response to mannitol	2.57E-03
55	GO:0071669: plant-type cell wall organization or biogenesis	3.03E-03
56	GO:0050790: regulation of catalytic activity	3.03E-03
57	GO:0009819: drought recovery	3.51E-03
58	GO:0009642: response to light intensity	3.51E-03
59	GO:0009834: plant-type secondary cell wall biogenesis	3.95E-03
60	GO:0006526: arginine biosynthetic process	4.02E-03
61	GO:0009808: lignin metabolic process	4.02E-03
62	GO:0010206: photosystem II repair	4.54E-03
63	GO:0006189: 'de novo' IMP biosynthetic process	4.54E-03
64	GO:0048589: developmental growth	4.54E-03
65	GO:0006349: regulation of gene expression by genetic imprinting	5.10E-03
66	GO:0042742: defense response to bacterium	5.63E-03
67	GO:0051707: response to other organism	5.85E-03
68	GO:0009735: response to cytokinin	5.90E-03
69	GO:0042546: cell wall biogenesis	6.09E-03
70	GO:0010015: root morphogenesis	6.27E-03
71	GO:0006816: calcium ion transport	6.27E-03
72	GO:0009773: photosynthetic electron transport in photosystem I	6.27E-03
73	GO:0009807: lignan biosynthetic process	6.27E-03
74	GO:0018119: peptidyl-cysteine S-nitrosylation	6.27E-03
75	GO:0010216: maintenance of DNA methylation	6.27E-03
76	GO:0050826: response to freezing	7.52E-03
77	GO:0009725: response to hormone	7.52E-03
78	GO:0051603: proteolysis involved in cellular protein catabolic process	8.16E-03
79	GO:0009933: meristem structural organization	8.19E-03
80	GO:0010223: secondary shoot formation	8.19E-03
81	GO:0009934: regulation of meristem structural organization	8.19E-03
82	GO:0070588: calcium ion transmembrane transport	8.87E-03
83	GO:0006071: glycerol metabolic process	9.57E-03
84	GO:0048367: shoot system development	9.63E-03
85	GO:0055114: oxidation-reduction process	1.01E-02
86	GO:0019344: cysteine biosynthetic process	1.03E-02
87	GO:0007010: cytoskeleton organization	1.03E-02
88	GO:0051302: regulation of cell division	1.10E-02
89	GO:0010026: trichome differentiation	1.10E-02
90	GO:0007017: microtubule-based process	1.10E-02
91	GO:0048278: vesicle docking	1.18E-02
92	GO:0046686: response to cadmium ion	1.22E-02
93	GO:0030245: cellulose catabolic process	1.26E-02
94	GO:0006730: one-carbon metabolic process	1.26E-02
95	GO:0080092: regulation of pollen tube growth	1.26E-02
96	GO:0009411: response to UV	1.34E-02
97	GO:0001944: vasculature development	1.34E-02
98	GO:0006284: base-excision repair	1.42E-02
99	GO:0019722: calcium-mediated signaling	1.42E-02
100	GO:0010089: xylem development	1.42E-02
101	GO:0006412: translation	1.50E-02
102	GO:0042335: cuticle development	1.59E-02
103	GO:0000413: protein peptidyl-prolyl isomerization	1.59E-02
104	GO:0010087: phloem or xylem histogenesis	1.59E-02
105	GO:0045489: pectin biosynthetic process	1.67E-02
106	GO:0010305: leaf vascular tissue pattern formation	1.67E-02
107	GO:0006520: cellular amino acid metabolic process	1.67E-02
108	GO:0061025: membrane fusion	1.76E-02
109	GO:0071554: cell wall organization or biogenesis	1.94E-02
110	GO:0016132: brassinosteroid biosynthetic process	1.94E-02
111	GO:0007264: small GTPase mediated signal transduction	2.04E-02
112	GO:0016126: sterol biosynthetic process	2.53E-02
113	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.63E-02
114	GO:0006906: vesicle fusion	2.73E-02
115	GO:0015995: chlorophyll biosynthetic process	2.84E-02
116	GO:0010411: xyloglucan metabolic process	2.84E-02
117	GO:0016311: dephosphorylation	2.94E-02
118	GO:0009658: chloroplast organization	3.02E-02
119	GO:0030244: cellulose biosynthetic process	3.05E-02
120	GO:0042254: ribosome biogenesis	3.08E-02
121	GO:0009813: flavonoid biosynthetic process	3.16E-02
122	GO:0009832: plant-type cell wall biogenesis	3.16E-02
123	GO:0048767: root hair elongation	3.16E-02
124	GO:0009910: negative regulation of flower development	3.38E-02
125	GO:0007568: aging	3.38E-02
126	GO:0016051: carbohydrate biosynthetic process	3.61E-02
127	GO:0006508: proteolysis	3.82E-02
128	GO:0006839: mitochondrial transport	3.96E-02
129	GO:0006631: fatty acid metabolic process	4.08E-02
130	GO:0006887: exocytosis	4.08E-02
131	GO:0042542: response to hydrogen peroxide	4.20E-02
132	GO:0015979: photosynthesis	4.26E-02
133	GO:0009744: response to sucrose	4.32E-02
134	GO:0009651: response to salt stress	4.42E-02

Rank	GO Term	Adjusted P value
1	GO:0050614: delta24-sterol reductase activity	0.00E+00
2	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
3	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
4	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
5	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
6	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
7	GO:0050613: delta14-sterol reductase activity	0.00E+00
8	GO:0051920: peroxiredoxin activity	5.90E-09
9	GO:0016209: antioxidant activity	2.11E-08
10	GO:0019843: rRNA binding	3.82E-05
11	GO:0030570: pectate lyase activity	7.92E-05
12	GO:0051753: mannan synthase activity	9.52E-05
13	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	1.98E-04
14	GO:0070626: (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity	1.98E-04
15	GO:0004560: alpha-L-fucosidase activity	1.98E-04
16	GO:0004013: adenosylhomocysteinase activity	1.98E-04
17	GO:0042349: guiding stereospecific synthesis activity	1.98E-04
18	GO:0004018: N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity	1.98E-04
19	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	1.98E-04
20	GO:0004047: aminomethyltransferase activity	4.43E-04
21	GO:0046593: mandelonitrile lyase activity	4.43E-04
22	GO:0005504: fatty acid binding	7.22E-04
23	GO:0030267: glyoxylate reductase (NADP) activity	7.22E-04
24	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	7.22E-04
25	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.03E-03
26	GO:0004550: nucleoside diphosphate kinase activity	1.03E-03
27	GO:0004601: peroxidase activity	1.13E-03
28	GO:1990137: plant seed peroxidase activity	1.37E-03
29	GO:0045430: chalcone isomerase activity	1.37E-03
30	GO:0046527: glucosyltransferase activity	1.37E-03
31	GO:0030414: peptidase inhibitor activity	1.74E-03
32	GO:0008725: DNA-3-methyladenine glycosylase activity	1.74E-03
33	GO:0003735: structural constituent of ribosome	1.89E-03
34	GO:0016462: pyrophosphatase activity	2.14E-03
35	GO:0008200: ion channel inhibitor activity	2.14E-03
36	GO:0005200: structural constituent of cytoskeleton	2.46E-03
37	GO:0016832: aldehyde-lyase activity	2.57E-03
38	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	2.57E-03
39	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.57E-03
40	GO:0004427: inorganic diphosphatase activity	3.03E-03
41	GO:0005507: copper ion binding	3.04E-03
42	GO:0009055: electron carrier activity	3.14E-03
43	GO:0004672: protein kinase activity	3.32E-03
44	GO:0052747: sinapyl alcohol dehydrogenase activity	3.51E-03
45	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.15E-03
46	GO:0008889: glycerophosphodiester phosphodiesterase activity	4.54E-03
47	GO:0008289: lipid binding	4.67E-03
48	GO:0004185: serine-type carboxypeptidase activity	5.85E-03
49	GO:0005089: Rho guanyl-nucleotide exchange factor activity	6.27E-03
50	GO:0045551: cinnamyl-alcohol dehydrogenase activity	6.89E-03
51	GO:0051287: NAD binding	7.08E-03
52	GO:0004565: beta-galactosidase activity	7.52E-03
53	GO:0005262: calcium channel activity	7.52E-03
54	GO:0030599: pectinesterase activity	1.06E-02
55	GO:0004176: ATP-dependent peptidase activity	1.18E-02
56	GO:0033612: receptor serine/threonine kinase binding	1.18E-02
57	GO:0005516: calmodulin binding	1.25E-02
58	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.26E-02
59	GO:0003924: GTPase activity	1.29E-02
60	GO:0008810: cellulase activity	1.34E-02
61	GO:0016760: cellulose synthase (UDP-forming) activity	1.34E-02
62	GO:0005102: receptor binding	1.50E-02
63	GO:0016829: lyase activity	1.53E-02
64	GO:0005199: structural constituent of cell wall	1.67E-02
65	GO:0019901: protein kinase binding	1.85E-02
66	GO:0004872: receptor activity	1.85E-02
67	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.94E-02
68	GO:0008483: transaminase activity	2.33E-02
69	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.33E-02
70	GO:0008237: metallopeptidase activity	2.33E-02
71	GO:0016413: O-acetyltransferase activity	2.42E-02
72	GO:0042802: identical protein binding	2.48E-02
73	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.84E-02
74	GO:0008236: serine-type peptidase activity	2.94E-02
75	GO:0004222: metalloendopeptidase activity	3.27E-02
76	GO:0030145: manganese ion binding	3.38E-02
77	GO:0050660: flavin adenine dinucleotide binding	3.49E-02
78	GO:0003746: translation elongation factor activity	3.61E-02
79	GO:0003993: acid phosphatase activity	3.73E-02
80	GO:0000149: SNARE binding	3.84E-02
81	GO:0052689: carboxylic ester hydrolase activity	4.13E-02
82	GO:0005484: SNAP receptor activity	4.32E-02
83	GO:0051537: 2 iron, 2 sulfur cluster binding	4.57E-02
84	GO:0005198: structural molecule activity	4.70E-02
85	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.82E-02
86	GO:0005525: GTP binding	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0009570: chloroplast stroma	2.13E-12
2	GO:0048046: apoplast	8.95E-11
3	GO:0031225: anchored component of membrane	3.35E-10
4	GO:0009579: thylakoid	9.99E-10
5	GO:0046658: anchored component of plasma membrane	2.64E-09
6	GO:0009507: chloroplast	5.15E-09
7	GO:0009505: plant-type cell wall	6.23E-09
8	GO:0009941: chloroplast envelope	3.97E-08
9	GO:0005576: extracellular region	2.10E-07
10	GO:0009534: chloroplast thylakoid	1.96E-06
11	GO:0009535: chloroplast thylakoid membrane	9.22E-06
12	GO:0009543: chloroplast thylakoid lumen	3.82E-05
13	GO:0031977: thylakoid lumen	6.73E-05
14	GO:0005618: cell wall	9.45E-05
15	GO:0000311: plastid large ribosomal subunit	4.56E-04
16	GO:0009506: plasmodesma	6.81E-04
17	GO:0005853: eukaryotic translation elongation factor 1 complex	7.22E-04
18	GO:0009654: photosystem II oxygen evolving complex	8.81E-04
19	GO:0005886: plasma membrane	1.45E-03
20	GO:0010168: ER body	2.14E-03
21	GO:0009536: plastid	2.33E-03
22	GO:0010319: stromule	2.46E-03
23	GO:0009533: chloroplast stromal thylakoid	3.03E-03
24	GO:0009539: photosystem II reaction center	4.02E-03
25	GO:0005811: lipid particle	4.02E-03
26	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.54E-03
27	GO:0045298: tubulin complex	4.54E-03
28	GO:0005763: mitochondrial small ribosomal subunit	4.54E-03
29	GO:0016324: apical plasma membrane	5.67E-03
30	GO:0005840: ribosome	6.12E-03
31	GO:0016020: membrane	7.82E-03
32	GO:0030095: chloroplast photosystem II	8.19E-03
33	GO:0000312: plastid small ribosomal subunit	8.19E-03
34	GO:0030176: integral component of endoplasmic reticulum membrane	8.87E-03
35	GO:0005875: microtubule associated complex	9.57E-03
36	GO:0042651: thylakoid membrane	1.10E-02
37	GO:0009532: plastid stroma	1.18E-02
38	GO:0009504: cell plate	1.85E-02
39	GO:0019898: extrinsic component of membrane	1.85E-02
40	GO:0005615: extracellular space	2.18E-02
41	GO:0000139: Golgi membrane	3.06E-02
42	GO:0000325: plant-type vacuole	3.38E-02
43	GO:0005874: microtubule	3.61E-02
44	GO:0031969: chloroplast membrane	3.74E-02
45	GO:0005773: vacuole	3.90E-02
46	GO:0031201: SNARE complex	4.08E-02
47	GO:0005856: cytoskeleton	4.70E-02