co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G38290

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
2	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
3	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
4	GO:0010190: cytochrome b6f complex assembly	3.09E-06
5	GO:0006427: histidyl-tRNA aminoacylation	3.00E-05
6	GO:0043039: tRNA aminoacylation	7.58E-05
7	GO:0006695: cholesterol biosynthetic process	7.58E-05
8	GO:0006518: peptide metabolic process	1.32E-04
9	GO:2000122: negative regulation of stomatal complex development	2.67E-04
10	GO:0010037: response to carbon dioxide	2.67E-04
11	GO:0015976: carbon utilization	2.67E-04
12	GO:0042372: phylloquinone biosynthetic process	5.02E-04
13	GO:0009854: oxidative photosynthetic carbon pathway	5.02E-04
14	GO:0045010: actin nucleation	6.76E-04
15	GO:0007155: cell adhesion	6.76E-04
16	GO:0009657: plastid organization	7.68E-04
17	GO:0033384: geranyl diphosphate biosynthetic process	8.63E-04
18	GO:0006098: pentose-phosphate shunt	8.63E-04
19	GO:0045337: farnesyl diphosphate biosynthetic process	8.63E-04
20	GO:0006779: porphyrin-containing compound biosynthetic process	9.61E-04
21	GO:0006535: cysteine biosynthetic process from serine	1.06E-03
22	GO:0006782: protoporphyrinogen IX biosynthetic process	1.06E-03
23	GO:0019684: photosynthesis, light reaction	1.16E-03
24	GO:0009089: lysine biosynthetic process via diaminopimelate	1.16E-03
25	GO:0006415: translational termination	1.16E-03
26	GO:0006790: sulfur compound metabolic process	1.27E-03
27	GO:0006094: gluconeogenesis	1.38E-03
28	GO:0010020: chloroplast fission	1.50E-03
29	GO:0046854: phosphatidylinositol phosphorylation	1.61E-03
30	GO:0019344: cysteine biosynthetic process	1.86E-03
31	GO:0006418: tRNA aminoacylation for protein translation	1.98E-03
32	GO:0061077: chaperone-mediated protein folding	2.11E-03
33	GO:0006508: proteolysis	2.29E-03
34	GO:0000271: polysaccharide biosynthetic process	2.80E-03
35	GO:0045489: pectin biosynthetic process	2.94E-03
36	GO:0015979: photosynthesis	3.47E-03
37	GO:0010583: response to cyclopentenone	3.55E-03
38	GO:0010090: trichome morphogenesis	3.71E-03
39	GO:0001666: response to hypoxia	4.36E-03
40	GO:0015995: chlorophyll biosynthetic process	4.88E-03
41	GO:0010119: regulation of stomatal movement	5.78E-03
42	GO:0016051: carbohydrate biosynthetic process	6.16E-03
43	GO:0009853: photorespiration	6.16E-03
44	GO:0051603: proteolysis involved in cellular protein catabolic process	9.25E-03
45	GO:0006096: glycolytic process	1.02E-02
46	GO:0006396: RNA processing	1.18E-02
47	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	2.20E-02
48	GO:0009658: chloroplast organization	2.32E-02
49	GO:0006810: transport	2.36E-02

Rank	GO Term	Adjusted P value
1	GO:0008887: glycerate kinase activity	0.00E+00
2	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
3	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
4	GO:0005528: FK506 binding	6.17E-07
5	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.78E-05
6	GO:0004821: histidine-tRNA ligase activity	3.00E-05
7	GO:0004831: tyrosine-tRNA ligase activity	3.00E-05
8	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	7.58E-05
9	GO:0050017: L-3-cyanoalanine synthase activity	7.58E-05
10	GO:0016149: translation release factor activity, codon specific	1.97E-04
11	GO:0016208: AMP binding	4.20E-04
12	GO:0004332: fructose-bisphosphate aldolase activity	4.20E-04
13	GO:0004124: cysteine synthase activity	5.02E-04
14	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	5.02E-04
15	GO:0003747: translation release factor activity	8.63E-04
16	GO:0004337: geranyltranstransferase activity	8.63E-04
17	GO:0004161: dimethylallyltranstransferase activity	1.16E-03
18	GO:0004089: carbonate dehydratase activity	1.38E-03
19	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.25E-03
20	GO:0004812: aminoacyl-tRNA ligase activity	2.66E-03
21	GO:0008236: serine-type peptidase activity	5.05E-03
22	GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding	5.05E-03
23	GO:0004222: metalloendopeptidase activity	5.60E-03
24	GO:0000987: core promoter proximal region sequence-specific DNA binding	6.35E-03
25	GO:0004185: serine-type carboxypeptidase activity	7.34E-03
26	GO:0005198: structural molecule activity	7.96E-03
27	GO:0022857: transmembrane transporter activity	1.11E-02
28	GO:0016758: transferase activity, transferring hexosyl groups	1.33E-02
29	GO:0030170: pyridoxal phosphate binding	1.46E-02
30	GO:0005509: calcium ion binding	1.48E-02
31	GO:0042802: identical protein binding	2.02E-02
32	GO:0052689: carboxylic ester hydrolase activity	2.91E-02
33	GO:0003924: GTPase activity	3.58E-02
34	GO:0016887: ATPase activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	4.41E-12
2	GO:0009543: chloroplast thylakoid lumen	1.09E-11
3	GO:0009535: chloroplast thylakoid membrane	7.88E-09
4	GO:0031977: thylakoid lumen	3.35E-07
5	GO:0009579: thylakoid	6.90E-07
6	GO:0009570: chloroplast stroma	7.82E-07
7	GO:0009654: photosystem II oxygen evolving complex	6.68E-05
8	GO:0019898: extrinsic component of membrane	1.52E-04
9	GO:0031209: SCAR complex	4.20E-04
10	GO:0009941: chloroplast envelope	9.67E-04
11	GO:0030095: chloroplast photosystem II	1.50E-03
12	GO:0042651: thylakoid membrane	1.98E-03
13	GO:0009532: plastid stroma	2.11E-03
14	GO:0005778: peroxisomal membrane	4.03E-03
15	GO:0005856: cytoskeleton	7.96E-03
16	GO:0009534: chloroplast thylakoid	9.56E-03
17	GO:0005874: microtubule	2.64E-02
18	GO:0005739: mitochondrion	2.71E-02
19	GO:0031969: chloroplast membrane	2.71E-02