co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G35560

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071260: cellular response to mechanical stimulus	0.00E+00
2	GO:0009877: nodulation	0.00E+00
3	GO:0042906: xanthine transport	0.00E+00
4	GO:0010219: regulation of vernalization response	0.00E+00
5	GO:0010378: temperature compensation of the circadian clock	0.00E+00
6	GO:0030644: cellular chloride ion homeostasis	0.00E+00
7	GO:0005997: xylulose metabolic process	0.00E+00
8	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
9	GO:0071311: cellular response to acetate	0.00E+00
10	GO:0009645: response to low light intensity stimulus	1.62E-06
11	GO:0010600: regulation of auxin biosynthetic process	2.66E-05
12	GO:0018298: protein-chromophore linkage	2.67E-05
13	GO:0010218: response to far red light	3.25E-05
14	GO:0009409: response to cold	3.48E-05
15	GO:0009768: photosynthesis, light harvesting in photosystem I	4.69E-05
16	GO:0009416: response to light stimulus	5.76E-05
17	GO:0035556: intracellular signal transduction	6.70E-05
18	GO:0007623: circadian rhythm	6.80E-05
19	GO:0009644: response to high light intensity	8.04E-05
20	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	8.84E-05
21	GO:0010928: regulation of auxin mediated signaling pathway	1.51E-04
22	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	1.88E-04
23	GO:0010496: intercellular transport	1.88E-04
24	GO:1900060: negative regulation of ceramide biosynthetic process	1.88E-04
25	GO:0010362: negative regulation of anion channel activity by blue light	1.88E-04
26	GO:0015812: gamma-aminobutyric acid transport	1.88E-04
27	GO:0032958: inositol phosphate biosynthetic process	1.88E-04
28	GO:0006369: termination of RNA polymerase II transcription	1.88E-04
29	GO:0034472: snRNA 3'-end processing	1.88E-04
30	GO:0010286: heat acclimation	2.25E-04
31	GO:0009641: shade avoidance	3.21E-04
32	GO:0006816: calcium ion transport	3.73E-04
33	GO:0009817: defense response to fungus, incompatible interaction	3.76E-04
34	GO:0000160: phosphorelay signal transduction system	4.01E-04
35	GO:0006883: cellular sodium ion homeostasis	4.24E-04
36	GO:0090057: root radial pattern formation	4.24E-04
37	GO:0048833: specification of floral organ number	4.24E-04
38	GO:0015857: uracil transport	4.24E-04
39	GO:1902884: positive regulation of response to oxidative stress	4.24E-04
40	GO:0051170: nuclear import	4.24E-04
41	GO:0030003: cellular cation homeostasis	4.24E-04
42	GO:0090156: cellular sphingolipid homeostasis	4.24E-04
43	GO:0015720: allantoin transport	4.24E-04
44	GO:0010155: regulation of proton transport	4.24E-04
45	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	4.86E-04
46	GO:0009637: response to blue light	5.10E-04
47	GO:0007165: signal transduction	5.46E-04
48	GO:0009737: response to abscisic acid	5.77E-04
49	GO:0042542: response to hydrogen peroxide	6.68E-04
50	GO:1902448: positive regulation of shade avoidance	6.92E-04
51	GO:0042344: indole glucosinolate catabolic process	6.92E-04
52	GO:0006598: polyamine catabolic process	6.92E-04
53	GO:0071230: cellular response to amino acid stimulus	6.92E-04
54	GO:0071705: nitrogen compound transport	6.92E-04
55	GO:1901562: response to paraquat	6.92E-04
56	GO:0030029: actin filament-based process	6.92E-04
57	GO:0009640: photomorphogenesis	7.03E-04
58	GO:0010114: response to red light	7.03E-04
59	GO:0008643: carbohydrate transport	7.76E-04
60	GO:0006874: cellular calcium ion homeostasis	8.29E-04
61	GO:0048511: rhythmic process	9.07E-04
62	GO:0009269: response to desiccation	9.07E-04
63	GO:0006020: inositol metabolic process	9.86E-04
64	GO:0010601: positive regulation of auxin biosynthetic process	9.86E-04
65	GO:0015749: monosaccharide transport	9.86E-04
66	GO:1901332: negative regulation of lateral root development	9.86E-04
67	GO:0010017: red or far-red light signaling pathway	9.89E-04
68	GO:0009585: red, far-red light phototransduction	1.02E-03
69	GO:0009414: response to water deprivation	1.30E-03
70	GO:0048442: sepal development	1.31E-03
71	GO:0009765: photosynthesis, light harvesting	1.31E-03
72	GO:1901409: positive regulation of phosphorylation of RNA polymerase II C-terminal domain	1.31E-03
73	GO:1901002: positive regulation of response to salt stress	1.31E-03
74	GO:0030104: water homeostasis	1.31E-03
75	GO:0006646: phosphatidylethanolamine biosynthetic process	1.31E-03
76	GO:0080167: response to karrikin	1.41E-03
77	GO:0006814: sodium ion transport	1.57E-03
78	GO:0048578: positive regulation of long-day photoperiodism, flowering	1.66E-03
79	GO:0016926: protein desumoylation	1.66E-03
80	GO:0043097: pyrimidine nucleoside salvage	1.66E-03
81	GO:0009904: chloroplast accumulation movement	1.66E-03
82	GO:0042732: D-xylose metabolic process	2.05E-03
83	GO:0006206: pyrimidine nucleobase metabolic process	2.05E-03
84	GO:0000741: karyogamy	2.05E-03
85	GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity	2.46E-03
86	GO:0009903: chloroplast avoidance movement	2.46E-03
87	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	2.46E-03
88	GO:0010161: red light signaling pathway	2.90E-03
89	GO:0048437: floral organ development	2.90E-03
90	GO:0009769: photosynthesis, light harvesting in photosystem II	2.90E-03
91	GO:0010038: response to metal ion	2.90E-03
92	GO:0010044: response to aluminum ion	2.90E-03
93	GO:0006506: GPI anchor biosynthetic process	3.36E-03
94	GO:0009415: response to water	3.36E-03
95	GO:0009704: de-etiolation	3.36E-03
96	GO:0006811: ion transport	3.71E-03
97	GO:0010099: regulation of photomorphogenesis	3.84E-03
98	GO:0009827: plant-type cell wall modification	3.84E-03
99	GO:0009631: cold acclimation	3.88E-03
100	GO:0010468: regulation of gene expression	3.95E-03
101	GO:0006098: pentose-phosphate shunt	4.35E-03
102	GO:0090333: regulation of stomatal closure	4.35E-03
103	GO:0046916: cellular transition metal ion homeostasis	4.35E-03
104	GO:0009638: phototropism	4.87E-03
105	GO:0048354: mucilage biosynthetic process involved in seed coat development	4.87E-03
106	GO:0010162: seed dormancy process	5.42E-03
107	GO:0055062: phosphate ion homeostasis	5.42E-03
108	GO:0048441: petal development	5.42E-03
109	GO:0000209: protein polyubiquitination	5.70E-03
110	GO:0009682: induced systemic resistance	5.99E-03
111	GO:0052544: defense response by callose deposition in cell wall	5.99E-03
112	GO:0030148: sphingolipid biosynthetic process	5.99E-03
113	GO:0006970: response to osmotic stress	6.04E-03
114	GO:0016925: protein sumoylation	6.58E-03
115	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	6.63E-03
116	GO:0000165: MAPK cascade	6.63E-03
117	GO:0009785: blue light signaling pathway	7.19E-03
118	GO:0050826: response to freezing	7.19E-03
119	GO:0009718: anthocyanin-containing compound biosynthetic process	7.19E-03
120	GO:0051603: proteolysis involved in cellular protein catabolic process	7.64E-03
121	GO:0048440: carpel development	7.82E-03
122	GO:0009266: response to temperature stimulus	7.82E-03
123	GO:0019853: L-ascorbic acid biosynthetic process	8.47E-03
124	GO:0090351: seedling development	8.47E-03
125	GO:0015979: photosynthesis	8.55E-03
126	GO:0055085: transmembrane transport	8.77E-03
127	GO:0006355: regulation of transcription, DNA-templated	8.91E-03
128	GO:0034976: response to endoplasmic reticulum stress	9.14E-03
129	GO:0045892: negative regulation of transcription, DNA-templated	9.27E-03
130	GO:0005975: carbohydrate metabolic process	1.04E-02
131	GO:0016575: histone deacetylation	1.05E-02
132	GO:0010431: seed maturation	1.13E-02
133	GO:0003333: amino acid transmembrane transport	1.13E-02
134	GO:0009408: response to heat	1.19E-02
135	GO:0019748: secondary metabolic process	1.20E-02
136	GO:0006012: galactose metabolic process	1.28E-02
137	GO:0009693: ethylene biosynthetic process	1.28E-02
138	GO:0071215: cellular response to abscisic acid stimulus	1.28E-02
139	GO:0048443: stamen development	1.35E-02
140	GO:0019722: calcium-mediated signaling	1.35E-02
141	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.43E-02
142	GO:0070417: cellular response to cold	1.43E-02
143	GO:0009651: response to salt stress	1.46E-02
144	GO:0080022: primary root development	1.51E-02
145	GO:0034220: ion transmembrane transport	1.51E-02
146	GO:0010197: polar nucleus fusion	1.60E-02
147	GO:0046323: glucose import	1.60E-02
148	GO:0042752: regulation of circadian rhythm	1.68E-02
149	GO:0042742: defense response to bacterium	1.77E-02
150	GO:0008654: phospholipid biosynthetic process	1.77E-02
151	GO:0009556: microsporogenesis	1.77E-02
152	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.85E-02
153	GO:0000302: response to reactive oxygen species	1.85E-02
154	GO:0010228: vegetative to reproductive phase transition of meristem	1.91E-02
155	GO:1901657: glycosyl compound metabolic process	2.03E-02
156	GO:0019760: glucosinolate metabolic process	2.13E-02
157	GO:0009617: response to bacterium	2.18E-02
158	GO:0009738: abscisic acid-activated signaling pathway	2.35E-02
159	GO:0016126: sterol biosynthetic process	2.41E-02
160	GO:0010029: regulation of seed germination	2.51E-02
161	GO:0009611: response to wounding	2.52E-02
162	GO:0006351: transcription, DNA-templated	2.69E-02
163	GO:0015995: chlorophyll biosynthetic process	2.71E-02
164	GO:0048573: photoperiodism, flowering	2.71E-02
165	GO:0010119: regulation of stomatal movement	3.23E-02
166	GO:0016051: carbohydrate biosynthetic process	3.45E-02
167	GO:0006952: defense response	3.74E-02
168	GO:0030001: metal ion transport	3.78E-02
169	GO:0044550: secondary metabolite biosynthetic process	3.80E-02
170	GO:0051707: response to other organism	4.13E-02
171	GO:0042538: hyperosmotic salinity response	4.85E-02
172	GO:0006812: cation transport	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
2	GO:0005272: sodium channel activity	0.00E+00
3	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
4	GO:0042907: xanthine transmembrane transporter activity	0.00E+00
5	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
6	GO:0009045: xylose isomerase activity	0.00E+00
7	GO:0004567: beta-mannosidase activity	0.00E+00
8	GO:0080082: esculin beta-glucosidase activity	0.00E+00
9	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
10	GO:0015276: ligand-gated ion channel activity	0.00E+00
11	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
12	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
13	GO:0031409: pigment binding	3.37E-05
14	GO:0004707: MAP kinase activity	5.45E-05
15	GO:0009679: hexose:proton symporter activity	1.88E-04
16	GO:0000829: inositol heptakisphosphate kinase activity	1.88E-04
17	GO:0080079: cellobiose glucosidase activity	1.88E-04
18	GO:0046870: cadmium ion binding	1.88E-04
19	GO:0008066: glutamate receptor activity	1.88E-04
20	GO:0000828: inositol hexakisphosphate kinase activity	1.88E-04
21	GO:0004856: xylulokinase activity	1.88E-04
22	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	1.88E-04
23	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	1.88E-04
24	GO:0000989: transcription factor activity, transcription factor binding	2.29E-04
25	GO:0016168: chlorophyll binding	2.85E-04
26	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	4.24E-04
27	GO:0003923: GPI-anchor transamidase activity	4.24E-04
28	GO:0015180: L-alanine transmembrane transporter activity	4.24E-04
29	GO:0032791: lead ion binding	4.24E-04
30	GO:0005274: allantoin uptake transmembrane transporter activity	4.24E-04
31	GO:0004609: phosphatidylserine decarboxylase activity	4.24E-04
32	GO:0047216: inositol 3-alpha-galactosyltransferase activity	4.24E-04
33	GO:0005262: calcium channel activity	4.86E-04
34	GO:0031624: ubiquitin conjugating enzyme binding	5.47E-04
35	GO:0005217: intracellular ligand-gated ion channel activity	6.12E-04
36	GO:0004970: ionotropic glutamate receptor activity	6.12E-04
37	GO:0046592: polyamine oxidase activity	6.92E-04
38	GO:0019948: SUMO activating enzyme activity	6.92E-04
39	GO:0017150: tRNA dihydrouridine synthase activity	6.92E-04
40	GO:0015189: L-lysine transmembrane transporter activity	9.86E-04
41	GO:0000254: C-4 methylsterol oxidase activity	9.86E-04
42	GO:0015181: arginine transmembrane transporter activity	9.86E-04
43	GO:0009882: blue light photoreceptor activity	9.86E-04
44	GO:0015210: uracil transmembrane transporter activity	1.31E-03
45	GO:0005313: L-glutamate transmembrane transporter activity	1.31E-03
46	GO:0005253: anion channel activity	1.31E-03
47	GO:0015145: monosaccharide transmembrane transporter activity	1.66E-03
48	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.66E-03
49	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.66E-03
50	GO:0016929: SUMO-specific protease activity	1.66E-03
51	GO:0000156: phosphorelay response regulator activity	2.04E-03
52	GO:0004629: phospholipase C activity	2.05E-03
53	GO:0015562: efflux transmembrane transporter activity	2.05E-03
54	GO:0000293: ferric-chelate reductase activity	2.05E-03
55	GO:0019137: thioglucosidase activity	2.05E-03
56	GO:0005247: voltage-gated chloride channel activity	2.05E-03
57	GO:0070300: phosphatidic acid binding	2.46E-03
58	GO:0004849: uridine kinase activity	2.46E-03
59	GO:0005261: cation channel activity	2.46E-03
60	GO:0004435: phosphatidylinositol phospholipase C activity	2.46E-03
61	GO:0015144: carbohydrate transmembrane transporter activity	2.63E-03
62	GO:0102483: scopolin beta-glucosidase activity	3.04E-03
63	GO:0005351: sugar:proton symporter activity	3.07E-03
64	GO:0004033: aldo-keto reductase (NADP) activity	3.36E-03
65	GO:0004525: ribonuclease III activity	3.36E-03
66	GO:0005267: potassium channel activity	3.84E-03
67	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	3.84E-03
68	GO:0001104: RNA polymerase II transcription cofactor activity	3.84E-03
69	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	4.35E-03
70	GO:0008270: zinc ion binding	4.50E-03
71	GO:0008422: beta-glucosidase activity	4.64E-03
72	GO:0047372: acylglycerol lipase activity	5.99E-03
73	GO:0046872: metal ion binding	6.93E-03
74	GO:0019888: protein phosphatase regulator activity	7.19E-03
75	GO:0004565: beta-galactosidase activity	7.19E-03
76	GO:0005315: inorganic phosphate transmembrane transporter activity	7.19E-03
77	GO:0000155: phosphorelay sensor kinase activity	7.19E-03
78	GO:0061630: ubiquitin protein ligase activity	7.71E-03
79	GO:0005515: protein binding	7.71E-03
80	GO:0004175: endopeptidase activity	7.82E-03
81	GO:0008131: primary amine oxidase activity	7.82E-03
82	GO:0008234: cysteine-type peptidase activity	8.18E-03
83	GO:0003712: transcription cofactor activity	8.47E-03
84	GO:0004407: histone deacetylase activity	9.83E-03
85	GO:0008324: cation transmembrane transporter activity	1.05E-02
86	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.13E-02
87	GO:0022891: substrate-specific transmembrane transporter activity	1.28E-02
88	GO:0008514: organic anion transmembrane transporter activity	1.35E-02
89	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.36E-02
90	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	1.60E-02
91	GO:0010181: FMN binding	1.68E-02
92	GO:0015297: antiporter activity	1.74E-02
93	GO:0004197: cysteine-type endopeptidase activity	1.94E-02
94	GO:0005200: structural constituent of cytoskeleton	2.22E-02
95	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.12E-02
96	GO:0004672: protein kinase activity	3.13E-02
97	GO:0016301: kinase activity	3.20E-02
98	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.46E-02
99	GO:0004497: monooxygenase activity	3.50E-02
100	GO:0004185: serine-type carboxypeptidase activity	4.13E-02
101	GO:0015293: symporter activity	4.48E-02
102	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	4.52E-02
103	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0009898: cytoplasmic side of plasma membrane	2.66E-05
2	GO:0030076: light-harvesting complex	2.82E-05
3	GO:0016021: integral component of membrane	3.42E-05
4	GO:0009522: photosystem I	1.29E-04
5	GO:0035339: SPOTS complex	1.88E-04
6	GO:0010287: plastoglobule	2.93E-04
7	GO:0000323: lytic vacuole	9.86E-04
8	GO:0032586: protein storage vacuole membrane	1.31E-03
9	GO:0009517: PSII associated light-harvesting complex II	1.31E-03
10	GO:0009523: photosystem II	1.68E-03
11	GO:0034707: chloride channel complex	2.05E-03
12	GO:0070847: core mediator complex	2.05E-03
13	GO:0005851: eukaryotic translation initiation factor 2B complex	2.05E-03
14	GO:0009986: cell surface	2.90E-03
15	GO:0016020: membrane	3.03E-03
16	GO:0000151: ubiquitin ligase complex	3.36E-03
17	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	3.84E-03
18	GO:0000326: protein storage vacuole	3.84E-03
19	GO:0010494: cytoplasmic stress granule	4.35E-03
20	GO:0005773: vacuole	5.08E-03
21	GO:0000159: protein phosphatase type 2A complex	5.99E-03
22	GO:0031966: mitochondrial membrane	6.88E-03
23	GO:0005938: cell cortex	7.19E-03
24	GO:0005764: lysosome	7.82E-03
25	GO:0009579: thylakoid	8.02E-03
26	GO:0016607: nuclear speck	9.02E-03
27	GO:0005783: endoplasmic reticulum	9.63E-03
28	GO:0031965: nuclear membrane	1.77E-02
29	GO:0016592: mediator complex	1.94E-02
30	GO:0000932: P-body	2.41E-02
31	GO:0009941: chloroplast envelope	2.76E-02
32	GO:0005777: peroxisome	2.91E-02
33	GO:0009534: chloroplast thylakoid	3.10E-02
34	GO:0005634: nucleus	3.93E-02
35	GO:0005774: vacuolar membrane	4.18E-02
36	GO:0005622: intracellular	4.97E-02