Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G34940

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009264: deoxyribonucleotide catabolic process0.00E+00
2GO:0016048: detection of temperature stimulus0.00E+00
3GO:0051555: flavonol biosynthetic process5.71E-10
4GO:0009963: positive regulation of flavonoid biosynthetic process7.25E-07
5GO:0080167: response to karrikin1.17E-06
6GO:0006342: chromatin silencing2.83E-06
7GO:0044030: regulation of DNA methylation1.32E-05
8GO:0009698: phenylpropanoid metabolic process3.02E-05
9GO:0048438: floral whorl development3.37E-05
10GO:1901537: positive regulation of DNA demethylation3.37E-05
11GO:0031539: positive regulation of anthocyanin metabolic process3.37E-05
12GO:0010220: positive regulation of vernalization response8.48E-05
13GO:0032886: regulation of microtubule-based process8.48E-05
14GO:1900386: positive regulation of flavonol biosynthetic process8.48E-05
15GO:0006152: purine nucleoside catabolic process8.48E-05
16GO:0007584: response to nutrient8.48E-05
17GO:0010253: UDP-rhamnose biosynthetic process1.47E-04
18GO:0006651: diacylglycerol biosynthetic process1.47E-04
19GO:0006556: S-adenosylmethionine biosynthetic process1.47E-04
20GO:0009743: response to carbohydrate2.18E-04
21GO:0034613: cellular protein localization2.95E-04
22GO:0009813: flavonoid biosynthetic process3.85E-04
23GO:0006555: methionine metabolic process4.63E-04
24GO:0010315: auxin efflux4.63E-04
25GO:0000060: protein import into nucleus, translocation4.63E-04
26GO:0046855: inositol phosphate dephosphorylation4.63E-04
27GO:0010076: maintenance of floral meristem identity5.53E-04
28GO:0010077: maintenance of inflorescence meristem identity5.53E-04
29GO:0009787: regulation of abscisic acid-activated signaling pathway7.44E-04
30GO:0010224: response to UV-B8.13E-04
31GO:0010099: regulation of photomorphogenesis8.45E-04
32GO:0009909: regulation of flower development8.67E-04
33GO:0046856: phosphatidylinositol dephosphorylation1.28E-03
34GO:0016925: protein sumoylation1.40E-03
35GO:0010582: floral meristem determinacy1.40E-03
36GO:0010223: secondary shoot formation1.65E-03
37GO:0009934: regulation of meristem structural organization1.65E-03
38GO:0009225: nucleotide-sugar metabolic process1.78E-03
39GO:0042753: positive regulation of circadian rhythm1.91E-03
40GO:0034976: response to endoplasmic reticulum stress1.91E-03
41GO:0009739: response to gibberellin2.07E-03
42GO:0010468: regulation of gene expression2.21E-03
43GO:0006334: nucleosome assembly2.33E-03
44GO:0010017: red or far-red light signaling pathway2.48E-03
45GO:0006730: one-carbon metabolic process2.48E-03
46GO:0009411: response to UV2.63E-03
47GO:0040007: growth2.63E-03
48GO:0042127: regulation of cell proliferation2.78E-03
49GO:0010584: pollen exine formation2.78E-03
50GO:0016117: carotenoid biosynthetic process2.94E-03
51GO:0010087: phloem or xylem histogenesis3.09E-03
52GO:0071555: cell wall organization3.22E-03
53GO:0009958: positive gravitropism3.25E-03
54GO:0010182: sugar mediated signaling pathway3.25E-03
55GO:0045489: pectin biosynthetic process3.25E-03
56GO:0007018: microtubule-based movement3.42E-03
57GO:0030154: cell differentiation3.58E-03
58GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.76E-03
59GO:0009630: gravitropism3.93E-03
60GO:0045454: cell redox homeostasis4.21E-03
61GO:0010252: auxin homeostasis4.28E-03
62GO:0048364: root development5.41E-03
63GO:0008152: metabolic process5.71E-03
64GO:0010218: response to far red light6.20E-03
65GO:0009637: response to blue light6.82E-03
66GO:0010114: response to red light8.14E-03
67GO:0009926: auxin polar transport8.14E-03
68GO:0009640: photomorphogenesis8.14E-03
69GO:0009737: response to abscisic acid8.39E-03
70GO:0000165: MAPK cascade9.30E-03
71GO:0009846: pollen germination9.54E-03
72GO:0009809: lignin biosynthetic process1.00E-02
73GO:0009585: red, far-red light phototransduction1.00E-02
74GO:0045893: positive regulation of transcription, DNA-templated1.06E-02
75GO:0009740: gibberellic acid mediated signaling pathway1.23E-02
76GO:0009845: seed germination1.59E-02
77GO:0007623: circadian rhythm1.89E-02
78GO:0045944: positive regulation of transcription from RNA polymerase II promoter2.45E-02
79GO:0009409: response to cold2.53E-02
80GO:0006970: response to osmotic stress2.72E-02
81GO:0009723: response to ethylene2.87E-02
82GO:0045892: negative regulation of transcription, DNA-templated3.46E-02
83GO:0009751: response to salicylic acid3.93E-02
84GO:0006629: lipid metabolic process3.97E-02
85GO:0009753: response to jasmonic acid4.18E-02
86GO:0006357: regulation of transcription from RNA polymerase II promoter4.85E-02
RankGO TermAdjusted P value
1GO:0047213: anthocyanidin 3-O-glucosyltransferase activity0.00E+00
2GO:0047974: guanosine deaminase activity0.00E+00
3GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity0.00E+00
4GO:0008194: UDP-glycosyltransferase activity9.91E-06
5GO:0046982: protein heterodimerization activity1.85E-05
6GO:0003677: DNA binding6.44E-05
7GO:0080043: quercetin 3-O-glucosyltransferase activity6.62E-05
8GO:0080044: quercetin 7-O-glucosyltransferase activity6.62E-05
9GO:0008460: dTDP-glucose 4,6-dehydratase activity8.48E-05
10GO:0010280: UDP-L-rhamnose synthase activity8.48E-05
11GO:0050377: UDP-glucose 4,6-dehydratase activity8.48E-05
12GO:0004478: methionine adenosyltransferase activity1.47E-04
13GO:0008253: 5'-nucleotidase activity1.47E-04
14GO:0052659: inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity1.47E-04
15GO:0052658: inositol-1,4,5-trisphosphate 5-phosphatase activity2.18E-04
16GO:0004445: inositol-polyphosphate 5-phosphatase activity2.18E-04
17GO:0045430: chalcone isomerase activity2.95E-04
18GO:0031386: protein tag3.77E-04
19GO:0008195: phosphatidate phosphatase activity5.53E-04
20GO:0019899: enzyme binding6.47E-04
21GO:0102425: myricetin 3-O-glucosyltransferase activity6.47E-04
22GO:0102360: daphnetin 3-O-glucosyltransferase activity6.47E-04
23GO:0016757: transferase activity, transferring glycosyl groups7.22E-04
24GO:0047893: flavonol 3-O-glucosyltransferase activity7.44E-04
25GO:0016207: 4-coumarate-CoA ligase activity9.49E-04
26GO:0008327: methyl-CpG binding1.28E-03
27GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding1.54E-03
28GO:0035251: UDP-glucosyltransferase activity2.33E-03
29GO:0003756: protein disulfide isomerase activity2.78E-03
30GO:0016853: isomerase activity3.42E-03
31GO:0016759: cellulose synthase activity4.28E-03
32GO:0004806: triglyceride lipase activity5.40E-03
33GO:0042393: histone binding7.47E-03
34GO:0003690: double-stranded DNA binding1.03E-02
35GO:0003777: microtubule motor activity1.08E-02
36GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups1.15E-02
37GO:0004650: polygalacturonase activity1.21E-02
38GO:0016874: ligase activity1.23E-02
39GO:0016758: transferase activity, transferring hexosyl groups1.48E-02
40GO:0016829: lyase activity1.59E-02
41GO:0008017: microtubule binding1.96E-02
42GO:0016491: oxidoreductase activity2.46E-02
43GO:0043565: sequence-specific DNA binding2.54E-02
44GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting3.42E-02
45GO:0042803: protein homodimerization activity3.54E-02
46GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding3.70E-02
47GO:0016787: hydrolase activity4.00E-02
RankGO TermAdjusted P value
1GO:0000788: nuclear nucleosome0.00E+00
2GO:0000786: nucleosome2.86E-07
3GO:0000790: nuclear chromatin2.15E-06
4GO:0010369: chromocenter5.53E-04
5GO:0043231: intracellular membrane-bounded organelle7.38E-04
6GO:0009574: preprophase band1.52E-03
7GO:0005871: kinesin complex2.94E-03
8GO:0005788: endoplasmic reticulum lumen5.02E-03
9GO:0005730: nucleolus6.26E-03
10GO:0031225: anchored component of membrane1.44E-02
11GO:0005623: cell1.54E-02
12GO:0009505: plant-type cell wall2.34E-02
13GO:0000139: Golgi membrane2.53E-02
14GO:0005874: microtubule2.94E-02
15GO:0009507: chloroplast3.37E-02
Gene type



Gene DE type