co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G26820

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090470: shoot organ boundary specification	0.00E+00
2	GO:0061635: regulation of protein complex stability	0.00E+00
3	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
4	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
5	GO:0016553: base conversion or substitution editing	0.00E+00
6	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
7	GO:0042371: vitamin K biosynthetic process	0.00E+00
8	GO:0006399: tRNA metabolic process	0.00E+00
9	GO:0002184: cytoplasmic translational termination	0.00E+00
10	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
11	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
12	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
13	GO:0015979: photosynthesis	6.19E-15
14	GO:0032544: plastid translation	8.64E-10
15	GO:0010027: thylakoid membrane organization	1.77E-09
16	GO:0006412: translation	2.05E-09
17	GO:0009658: chloroplast organization	3.05E-09
18	GO:0015995: chlorophyll biosynthetic process	1.21E-07
19	GO:0042254: ribosome biogenesis	8.39E-07
20	GO:0042549: photosystem II stabilization	1.59E-06
21	GO:0010196: nonphotochemical quenching	4.46E-06
22	GO:0090391: granum assembly	1.31E-05
23	GO:0010207: photosystem II assembly	5.78E-05
24	GO:0009735: response to cytokinin	2.14E-04
25	GO:0006353: DNA-templated transcription, termination	2.76E-04
26	GO:0043489: RNA stabilization	2.82E-04
27	GO:1904966: positive regulation of vitamin E biosynthetic process	2.82E-04
28	GO:0000481: maturation of 5S rRNA	2.82E-04
29	GO:1904964: positive regulation of phytol biosynthetic process	2.82E-04
30	GO:0034337: RNA folding	2.82E-04
31	GO:0071588: hydrogen peroxide mediated signaling pathway	2.82E-04
32	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.82E-04
33	GO:0071482: cellular response to light stimulus	3.40E-04
34	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.19E-04
35	GO:0001736: establishment of planar polarity	6.19E-04
36	GO:0006568: tryptophan metabolic process	6.19E-04
37	GO:0030388: fructose 1,6-bisphosphate metabolic process	6.19E-04
38	GO:0010024: phytochromobilin biosynthetic process	6.19E-04
39	GO:0010270: photosystem II oxygen evolving complex assembly	6.19E-04
40	GO:0009773: photosynthetic electron transport in photosystem I	6.54E-04
41	GO:0016024: CDP-diacylglycerol biosynthetic process	7.47E-04
42	GO:0006006: glucose metabolic process	8.46E-04
43	GO:0006094: gluconeogenesis	8.46E-04
44	GO:0006000: fructose metabolic process	1.00E-03
45	GO:0006954: inflammatory response	1.00E-03
46	GO:0006788: heme oxidation	1.00E-03
47	GO:0006518: peptide metabolic process	1.00E-03
48	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.00E-03
49	GO:0009800: cinnamic acid biosynthetic process	1.44E-03
50	GO:0031048: chromatin silencing by small RNA	1.44E-03
51	GO:0010088: phloem development	1.44E-03
52	GO:2001141: regulation of RNA biosynthetic process	1.44E-03
53	GO:0010371: regulation of gibberellin biosynthetic process	1.44E-03
54	GO:0009152: purine ribonucleotide biosynthetic process	1.44E-03
55	GO:0046653: tetrahydrofolate metabolic process	1.44E-03
56	GO:0010239: chloroplast mRNA processing	1.44E-03
57	GO:0019048: modulation by virus of host morphology or physiology	1.44E-03
58	GO:0051567: histone H3-K9 methylation	1.92E-03
59	GO:0042991: transcription factor import into nucleus	1.92E-03
60	GO:0045727: positive regulation of translation	1.92E-03
61	GO:0015994: chlorophyll metabolic process	1.92E-03
62	GO:0009306: protein secretion	2.04E-03
63	GO:0000413: protein peptidyl-prolyl isomerization	2.39E-03
64	GO:0080110: sporopollenin biosynthetic process	2.46E-03
65	GO:0006564: L-serine biosynthetic process	2.46E-03
66	GO:0010236: plastoquinone biosynthetic process	2.46E-03
67	GO:0045038: protein import into chloroplast thylakoid membrane	2.46E-03
68	GO:0031365: N-terminal protein amino acid modification	2.46E-03
69	GO:0006655: phosphatidylglycerol biosynthetic process	3.03E-03
70	GO:0006828: manganese ion transport	3.03E-03
71	GO:0006559: L-phenylalanine catabolic process	3.03E-03
72	GO:0010190: cytochrome b6f complex assembly	3.03E-03
73	GO:0032973: amino acid export	3.03E-03
74	GO:0016458: gene silencing	3.03E-03
75	GO:0006751: glutathione catabolic process	3.03E-03
76	GO:0000470: maturation of LSU-rRNA	3.03E-03
77	GO:0042372: phylloquinone biosynthetic process	3.65E-03
78	GO:0009082: branched-chain amino acid biosynthetic process	3.65E-03
79	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.65E-03
80	GO:0017148: negative regulation of translation	3.65E-03
81	GO:1901259: chloroplast rRNA processing	3.65E-03
82	GO:0009099: valine biosynthetic process	3.65E-03
83	GO:0010019: chloroplast-nucleus signaling pathway	3.65E-03
84	GO:0071805: potassium ion transmembrane transport	4.08E-03
85	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	4.30E-03
86	GO:0006400: tRNA modification	4.30E-03
87	GO:0009772: photosynthetic electron transport in photosystem II	4.30E-03
88	GO:0043090: amino acid import	4.30E-03
89	GO:0042255: ribosome assembly	4.99E-03
90	GO:0006605: protein targeting	4.99E-03
91	GO:0032508: DNA duplex unwinding	4.99E-03
92	GO:0048564: photosystem I assembly	4.99E-03
93	GO:0016311: dephosphorylation	5.69E-03
94	GO:0009097: isoleucine biosynthetic process	5.72E-03
95	GO:0017004: cytochrome complex assembly	5.72E-03
96	GO:0006002: fructose 6-phosphate metabolic process	5.72E-03
97	GO:0018298: protein-chromophore linkage	5.98E-03
98	GO:0006457: protein folding	6.37E-03
99	GO:0006098: pentose-phosphate shunt	6.48E-03
100	GO:0090305: nucleic acid phosphodiester bond hydrolysis	6.48E-03
101	GO:0010206: photosystem II repair	6.48E-03
102	GO:0080144: amino acid homeostasis	6.48E-03
103	GO:0034765: regulation of ion transmembrane transport	6.48E-03
104	GO:0009051: pentose-phosphate shunt, oxidative branch	6.48E-03
105	GO:0009451: RNA modification	6.80E-03
106	GO:0009631: cold acclimation	6.92E-03
107	GO:0010205: photoinhibition	7.28E-03
108	GO:0006779: porphyrin-containing compound biosynthetic process	7.28E-03
109	GO:0009098: leucine biosynthetic process	7.28E-03
110	GO:0009637: response to blue light	7.59E-03
111	GO:0034599: cellular response to oxidative stress	7.94E-03
112	GO:0006782: protoporphyrinogen IX biosynthetic process	8.11E-03
113	GO:0030422: production of siRNA involved in RNA interference	8.11E-03
114	GO:0048829: root cap development	8.11E-03
115	GO:0008285: negative regulation of cell proliferation	8.97E-03
116	GO:0043085: positive regulation of catalytic activity	8.97E-03
117	GO:0006415: translational termination	8.97E-03
118	GO:0006352: DNA-templated transcription, initiation	8.97E-03
119	GO:0009750: response to fructose	8.97E-03
120	GO:0048765: root hair cell differentiation	8.97E-03
121	GO:0006816: calcium ion transport	8.97E-03
122	GO:0010114: response to red light	9.80E-03
123	GO:0005983: starch catabolic process	9.88E-03
124	GO:0010628: positive regulation of gene expression	1.08E-02
125	GO:0005986: sucrose biosynthetic process	1.08E-02
126	GO:0019253: reductive pentose-phosphate cycle	1.18E-02
127	GO:0010143: cutin biosynthetic process	1.18E-02
128	GO:0006364: rRNA processing	1.32E-02
129	GO:0006813: potassium ion transport	1.32E-02
130	GO:0006636: unsaturated fatty acid biosynthetic process	1.38E-02
131	GO:0000027: ribosomal large subunit assembly	1.48E-02
132	GO:0007010: cytoskeleton organization	1.48E-02
133	GO:0006096: glycolytic process	1.57E-02
134	GO:0006418: tRNA aminoacylation for protein translation	1.59E-02
135	GO:0009768: photosynthesis, light harvesting in photosystem I	1.59E-02
136	GO:0010073: meristem maintenance	1.59E-02
137	GO:0006306: DNA methylation	1.70E-02
138	GO:0003333: amino acid transmembrane transport	1.70E-02
139	GO:0016226: iron-sulfur cluster assembly	1.81E-02
140	GO:0045454: cell redox homeostasis	1.90E-02
141	GO:0010227: floral organ abscission	1.93E-02
142	GO:0010584: pollen exine formation	2.05E-02
143	GO:0009793: embryo development ending in seed dormancy	2.20E-02
144	GO:0042335: cuticle development	2.29E-02
145	GO:0042391: regulation of membrane potential	2.29E-02
146	GO:0008033: tRNA processing	2.29E-02
147	GO:0009958: positive gravitropism	2.42E-02
148	GO:0006662: glycerol ether metabolic process	2.42E-02
149	GO:0006342: chromatin silencing	2.42E-02
150	GO:0006814: sodium ion transport	2.54E-02
151	GO:0048825: cotyledon development	2.67E-02
152	GO:0009790: embryo development	2.76E-02
153	GO:0002229: defense response to oomycetes	2.81E-02
154	GO:0000302: response to reactive oxygen species	2.81E-02
155	GO:0032502: developmental process	2.94E-02
156	GO:0030163: protein catabolic process	3.08E-02
157	GO:0051607: defense response to virus	3.50E-02
158	GO:0001666: response to hypoxia	3.65E-02
159	GO:0009816: defense response to bacterium, incompatible interaction	3.80E-02
160	GO:0042128: nitrate assimilation	3.95E-02
161	GO:0009817: defense response to fungus, incompatible interaction	4.41E-02
162	GO:0048481: plant ovule development	4.41E-02
163	GO:0010311: lateral root formation	4.56E-02
164	GO:0009407: toxin catabolic process	4.72E-02
165	GO:0010218: response to far red light	4.72E-02
166	GO:0009737: response to abscisic acid	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
2	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
3	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
4	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
5	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
6	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
7	GO:0005048: signal sequence binding	0.00E+00
8	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
9	GO:0019843: rRNA binding	2.95E-20
10	GO:0003735: structural constituent of ribosome	4.85E-10
11	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.93E-09
12	GO:0016851: magnesium chelatase activity	1.24E-07
13	GO:0005528: FK506 binding	3.26E-06
14	GO:0043023: ribosomal large subunit binding	2.94E-05
15	GO:0004659: prenyltransferase activity	5.29E-05
16	GO:0008266: poly(U) RNA binding	5.78E-05
17	GO:0045485: omega-6 fatty acid desaturase activity	2.82E-04
18	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.82E-04
19	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.82E-04
20	GO:0016630: protochlorophyllide reductase activity	6.19E-04
21	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	6.19E-04
22	GO:0047746: chlorophyllase activity	6.19E-04
23	GO:0003839: gamma-glutamylcyclotransferase activity	6.19E-04
24	GO:0004617: phosphoglycerate dehydrogenase activity	6.19E-04
25	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	6.19E-04
26	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	6.19E-04
27	GO:0045548: phenylalanine ammonia-lyase activity	1.00E-03
28	GO:0002161: aminoacyl-tRNA editing activity	1.00E-03
29	GO:0030267: glyoxylate reductase (NADP) activity	1.00E-03
30	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.00E-03
31	GO:0008864: formyltetrahydrofolate deformylase activity	1.00E-03
32	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.00E-03
33	GO:0015079: potassium ion transmembrane transporter activity	1.44E-03
34	GO:0016149: translation release factor activity, codon specific	1.44E-03
35	GO:0035197: siRNA binding	1.44E-03
36	GO:0052656: L-isoleucine transaminase activity	1.44E-03
37	GO:0052654: L-leucine transaminase activity	1.44E-03
38	GO:0008097: 5S rRNA binding	1.44E-03
39	GO:0008508: bile acid:sodium symporter activity	1.44E-03
40	GO:0052655: L-valine transaminase activity	1.44E-03
41	GO:0001872: (1->3)-beta-D-glucan binding	1.44E-03
42	GO:0003723: RNA binding	1.68E-03
43	GO:0004084: branched-chain-amino-acid transaminase activity	1.92E-03
44	GO:0043495: protein anchor	1.92E-03
45	GO:0004392: heme oxygenase (decyclizing) activity	1.92E-03
46	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.92E-03
47	GO:0001053: plastid sigma factor activity	1.92E-03
48	GO:0010011: auxin binding	1.92E-03
49	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.92E-03
50	GO:0016987: sigma factor activity	1.92E-03
51	GO:0010328: auxin influx transmembrane transporter activity	1.92E-03
52	GO:0003959: NADPH dehydrogenase activity	2.46E-03
53	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.46E-03
54	GO:0004040: amidase activity	2.46E-03
55	GO:0050662: coenzyme binding	2.77E-03
56	GO:0004130: cytochrome-c peroxidase activity	3.03E-03
57	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.03E-03
58	GO:0016688: L-ascorbate peroxidase activity	3.03E-03
59	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.03E-03
60	GO:0004332: fructose-bisphosphate aldolase activity	3.03E-03
61	GO:0003729: mRNA binding	3.12E-03
62	GO:0004518: nuclease activity	3.39E-03
63	GO:0015631: tubulin binding	3.65E-03
64	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.65E-03
65	GO:0005242: inward rectifier potassium channel activity	3.65E-03
66	GO:0051920: peroxiredoxin activity	3.65E-03
67	GO:0005509: calcium ion binding	3.70E-03
68	GO:0019899: enzyme binding	4.30E-03
69	GO:0008235: metalloexopeptidase activity	4.30E-03
70	GO:0016168: chlorophyll binding	4.85E-03
71	GO:0004033: aldo-keto reductase (NADP) activity	4.99E-03
72	GO:0043022: ribosome binding	4.99E-03
73	GO:0016209: antioxidant activity	4.99E-03
74	GO:0008312: 7S RNA binding	4.99E-03
75	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	5.98E-03
76	GO:0003747: translation release factor activity	6.48E-03
77	GO:0004222: metalloendopeptidase activity	6.60E-03
78	GO:0005384: manganese ion transmembrane transporter activity	7.28E-03
79	GO:0008047: enzyme activator activity	8.11E-03
80	GO:0050661: NADP binding	8.65E-03
81	GO:0042802: identical protein binding	8.96E-03
82	GO:0015386: potassium:proton antiporter activity	8.97E-03
83	GO:0004177: aminopeptidase activity	8.97E-03
84	GO:0000049: tRNA binding	9.88E-03
85	GO:0004521: endoribonuclease activity	9.88E-03
86	GO:0043621: protein self-association	1.06E-02
87	GO:0008081: phosphoric diester hydrolase activity	1.08E-02
88	GO:0015095: magnesium ion transmembrane transporter activity	1.08E-02
89	GO:0031072: heat shock protein binding	1.08E-02
90	GO:0016788: hydrolase activity, acting on ester bonds	1.18E-02
91	GO:0051287: NAD binding	1.19E-02
92	GO:0046872: metal ion binding	1.36E-02
93	GO:0031409: pigment binding	1.38E-02
94	GO:0015171: amino acid transmembrane transporter activity	1.47E-02
95	GO:0051536: iron-sulfur cluster binding	1.48E-02
96	GO:0022891: substrate-specific transmembrane transporter activity	1.93E-02
97	GO:0016746: transferase activity, transferring acyl groups	1.95E-02
98	GO:0003727: single-stranded RNA binding	2.05E-02
99	GO:0047134: protein-disulfide reductase activity	2.17E-02
100	GO:0004812: aminoacyl-tRNA ligase activity	2.17E-02
101	GO:0016491: oxidoreductase activity	2.22E-02
102	GO:0030551: cyclic nucleotide binding	2.29E-02
103	GO:0008080: N-acetyltransferase activity	2.42E-02
104	GO:0004791: thioredoxin-disulfide reductase activity	2.54E-02
105	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.08E-02
106	GO:0016791: phosphatase activity	3.22E-02
107	GO:0008237: metallopeptidase activity	3.36E-02
108	GO:0016597: amino acid binding	3.50E-02
109	GO:0004721: phosphoprotein phosphatase activity	4.10E-02
110	GO:0030247: polysaccharide binding	4.10E-02
111	GO:0008236: serine-type peptidase activity	4.25E-02
112	GO:0015238: drug transmembrane transporter activity	4.56E-02
113	GO:0003824: catalytic activity	4.77E-02
114	GO:0016787: hydrolase activity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009507: chloroplast	1.18E-72
3	GO:0009570: chloroplast stroma	6.32E-43
4	GO:0009941: chloroplast envelope	5.04E-32
5	GO:0009535: chloroplast thylakoid membrane	4.53E-30
6	GO:0009579: thylakoid	3.89E-26
7	GO:0009543: chloroplast thylakoid lumen	2.95E-20
8	GO:0009534: chloroplast thylakoid	1.37E-16
9	GO:0031977: thylakoid lumen	1.67E-16
10	GO:0005840: ribosome	3.63E-12
11	GO:0009654: photosystem II oxygen evolving complex	1.29E-09
12	GO:0019898: extrinsic component of membrane	1.65E-08
13	GO:0010007: magnesium chelatase complex	2.56E-08
14	GO:0031969: chloroplast membrane	1.87E-05
15	GO:0042651: thylakoid membrane	1.12E-04
16	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.82E-04
17	GO:0009547: plastid ribosome	2.82E-04
18	GO:0080085: signal recognition particle, chloroplast targeting	6.19E-04
19	GO:0016020: membrane	6.45E-04
20	GO:0000311: plastid large ribosomal subunit	7.47E-04
21	GO:0030095: chloroplast photosystem II	9.50E-04
22	GO:0005719: nuclear euchromatin	1.44E-03
23	GO:0046658: anchored component of plasma membrane	1.94E-03
24	GO:0009536: plastid	2.05E-03
25	GO:0009523: photosystem II	2.97E-03
26	GO:0009986: cell surface	4.30E-03
27	GO:0009533: chloroplast stromal thylakoid	4.30E-03
28	GO:0030529: intracellular ribonucleoprotein complex	4.59E-03
29	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	5.72E-03
30	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.48E-03
31	GO:0015934: large ribosomal subunit	6.92E-03
32	GO:0015030: Cajal body	7.28E-03
33	GO:0032040: small-subunit processome	9.88E-03
34	GO:0000312: plastid small ribosomal subunit	1.18E-02
35	GO:0030076: light-harvesting complex	1.28E-02
36	GO:0015935: small ribosomal subunit	1.70E-02
37	GO:0009706: chloroplast inner membrane	1.89E-02
38	GO:0010287: plastoglobule	2.24E-02
39	GO:0009522: photosystem I	2.54E-02
40	GO:0010319: stromule	3.36E-02