co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G25590

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010442: guard cell morphogenesis	1.87E-05
2	GO:0019510: S-adenosylhomocysteine catabolic process	1.87E-05
3	GO:0006438: valyl-tRNA aminoacylation	1.87E-05
4	GO:0009294: DNA mediated transformation	4.67E-05
5	GO:0033353: S-adenosylmethionine cycle	4.85E-05
6	GO:0010424: DNA methylation on cytosine within a CG sequence	4.85E-05
7	GO:0052541: plant-type cell wall cellulose metabolic process	4.85E-05
8	GO:0010069: zygote asymmetric cytokinesis in embryo sac	4.85E-05
9	GO:0006065: UDP-glucuronate biosynthetic process	8.61E-05
10	GO:0043572: plastid fission	1.30E-04
11	GO:0009765: photosynthesis, light harvesting	1.78E-04
12	GO:0016123: xanthophyll biosynthetic process	2.30E-04
13	GO:0016120: carotene biosynthetic process	2.30E-04
14	GO:0009094: L-phenylalanine biosynthetic process	3.42E-04
15	GO:0048589: developmental growth	5.93E-04
16	GO:0006349: regulation of gene expression by genetic imprinting	6.61E-04
17	GO:0018119: peptidyl-cysteine S-nitrosylation	8.02E-04
18	GO:0010216: maintenance of DNA methylation	8.02E-04
19	GO:0010020: chloroplast fission	1.02E-03
20	GO:0006071: glycerol metabolic process	1.18E-03
21	GO:0007010: cytoskeleton organization	1.26E-03
22	GO:0006418: tRNA aminoacylation for protein translation	1.35E-03
23	GO:0010026: trichome differentiation	1.35E-03
24	GO:0006730: one-carbon metabolic process	1.52E-03
25	GO:0006284: base-excision repair	1.70E-03
26	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.77E-03
27	GO:0016117: carotenoid biosynthetic process	1.80E-03
28	GO:0071554: cell wall organization or biogenesis	2.29E-03
29	GO:0007264: small GTPase mediated signal transduction	2.40E-03
30	GO:0048767: root hair elongation	3.63E-03
31	GO:0009407: toxin catabolic process	3.76E-03
32	GO:0009910: negative regulation of flower development	3.88E-03
33	GO:0009636: response to toxic substance	5.32E-03
34	GO:0048367: shoot system development	6.91E-03
35	GO:0016569: covalent chromatin modification	7.38E-03
36	GO:0006633: fatty acid biosynthetic process	1.06E-02
37	GO:0009617: response to bacterium	1.28E-02
38	GO:0009658: chloroplast organization	1.54E-02
39	GO:0015979: photosynthesis	1.97E-02
40	GO:0045454: cell redox homeostasis	2.03E-02
41	GO:0009793: embryo development ending in seed dormancy	2.07E-02
42	GO:0006629: lipid metabolic process	2.36E-02
43	GO:0006281: DNA repair	2.36E-02
44	GO:0048364: root development	2.43E-02

Rank	GO Term	Adjusted P value
1	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
2	GO:0004832: valine-tRNA ligase activity	1.87E-05
3	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	1.87E-05
4	GO:0004013: adenosylhomocysteinase activity	1.87E-05
5	GO:0003979: UDP-glucose 6-dehydrogenase activity	8.61E-05
6	GO:0047769: arogenate dehydratase activity	1.78E-04
7	GO:0004664: prephenate dehydratase activity	1.78E-04
8	GO:0008725: DNA-3-methyladenine glycosylase activity	2.30E-04
9	GO:0051753: mannan synthase activity	3.42E-04
10	GO:0051920: peroxiredoxin activity	3.42E-04
11	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	3.42E-04
12	GO:0051287: NAD binding	3.48E-04
13	GO:0043295: glutathione binding	4.02E-04
14	GO:0016209: antioxidant activity	4.64E-04
15	GO:0008889: glycerophosphodiester phosphodiesterase activity	5.93E-04
16	GO:0004565: beta-galactosidase activity	9.49E-04
17	GO:0004176: ATP-dependent peptidase activity	1.44E-03
18	GO:0003682: chromatin binding	1.47E-03
19	GO:0004812: aminoacyl-tRNA ligase activity	1.80E-03
20	GO:0001085: RNA polymerase II transcription factor binding	1.99E-03
21	GO:0005200: structural constituent of cytoskeleton	2.72E-03
22	GO:0008237: metallopeptidase activity	2.72E-03
23	GO:0016413: O-acetyltransferase activity	2.82E-03
24	GO:0016597: amino acid binding	2.82E-03
25	GO:0004222: metalloendopeptidase activity	3.76E-03
26	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.88E-03
27	GO:0004364: glutathione transferase activity	4.77E-03
28	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	9.16E-03
29	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	9.85E-03
30	GO:0004672: protein kinase activity	1.31E-02
31	GO:0008168: methyltransferase activity	1.50E-02
32	GO:0004601: peroxidase activity	1.54E-02
33	GO:0003924: GTPase activity	2.36E-02
34	GO:0016887: ATPase activity	3.23E-02
35	GO:0030246: carbohydrate binding	4.39E-02
36	GO:0004674: protein serine/threonine kinase activity	4.39E-02

Rank	GO Term	Adjusted P value
1	GO:0046658: anchored component of plasma membrane	8.60E-05
2	GO:0031225: anchored component of membrane	1.00E-04
3	GO:0009539: photosystem II reaction center	5.27E-04
4	GO:0005886: plasma membrane	6.34E-04
5	GO:0009579: thylakoid	6.59E-04
6	GO:0009654: photosystem II oxygen evolving complex	1.35E-03
7	GO:0009570: chloroplast stroma	2.90E-03
8	GO:0005667: transcription factor complex	3.16E-03
9	GO:0009507: chloroplast	3.26E-03
10	GO:0005856: cytoskeleton	5.32E-03
11	GO:0009706: chloroplast inner membrane	7.69E-03
12	GO:0009536: plastid	1.09E-02
13	GO:0009505: plant-type cell wall	1.12E-02
14	GO:0031969: chloroplast membrane	1.79E-02
15	GO:0009535: chloroplast thylakoid membrane	2.00E-02
16	GO:0048046: apoplast	3.25E-02
17	GO:0009506: plasmodesma	3.28E-02
18	GO:0005618: cell wall	3.54E-02
19	GO:0009941: chloroplast envelope	4.19E-02
20	GO:0005773: vacuole	4.73E-02