co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G25460

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0009739: response to gibberellin	1.21E-05
3	GO:0010206: photosystem II repair	1.88E-05
4	GO:0009740: gibberellic acid mediated signaling pathway	7.98E-05
5	GO:0010541: acropetal auxin transport	9.09E-05
6	GO:0001736: establishment of planar polarity	9.09E-05
7	GO:0006898: receptor-mediated endocytosis	9.09E-05
8	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.20E-04
9	GO:0016045: detection of bacterium	1.58E-04
10	GO:0010359: regulation of anion channel activity	1.58E-04
11	GO:0080055: low-affinity nitrate transport	1.58E-04
12	GO:0045493: xylan catabolic process	1.58E-04
13	GO:0010160: formation of animal organ boundary	1.58E-04
14	GO:0009958: positive gravitropism	1.69E-04
15	GO:0009650: UV protection	2.33E-04
16	GO:0051513: regulation of monopolar cell growth	2.33E-04
17	GO:0080170: hydrogen peroxide transmembrane transport	2.33E-04
18	GO:0043481: anthocyanin accumulation in tissues in response to UV light	2.33E-04
19	GO:0009828: plant-type cell wall loosening	2.57E-04
20	GO:0030104: water homeostasis	3.14E-04
21	GO:0015995: chlorophyll biosynthetic process	3.63E-04
22	GO:0060918: auxin transport	4.92E-04
23	GO:0006751: glutathione catabolic process	4.92E-04
24	GO:0009926: auxin polar transport	6.47E-04
25	GO:1900056: negative regulation of leaf senescence	6.87E-04
26	GO:0009664: plant-type cell wall organization	8.04E-04
27	GO:0009245: lipid A biosynthetic process	1.01E-03
28	GO:0009734: auxin-activated signaling pathway	1.12E-03
29	GO:0009638: phototropism	1.12E-03
30	GO:0048829: root cap development	1.24E-03
31	GO:0006949: syncytium formation	1.24E-03
32	GO:0048765: root hair cell differentiation	1.36E-03
33	GO:0052544: defense response by callose deposition in cell wall	1.36E-03
34	GO:0008361: regulation of cell size	1.49E-03
35	GO:0016024: CDP-diacylglycerol biosynthetic process	1.49E-03
36	GO:0009785: blue light signaling pathway	1.62E-03
37	GO:0010540: basipetal auxin transport	1.76E-03
38	GO:0010143: cutin biosynthetic process	1.76E-03
39	GO:0006636: unsaturated fatty acid biosynthetic process	2.04E-03
40	GO:0045490: pectin catabolic process	2.04E-03
41	GO:0051017: actin filament bundle assembly	2.18E-03
42	GO:2000377: regulation of reactive oxygen species metabolic process	2.18E-03
43	GO:0003333: amino acid transmembrane transport	2.48E-03
44	GO:0009411: response to UV	2.80E-03
45	GO:0048443: stamen development	2.96E-03
46	GO:0006284: base-excision repair	2.96E-03
47	GO:0009826: unidimensional cell growth	3.01E-03
48	GO:0034220: ion transmembrane transport	3.30E-03
49	GO:0042335: cuticle development	3.30E-03
50	GO:0071555: cell wall organization	3.63E-03
51	GO:0080167: response to karrikin	3.87E-03
52	GO:0009630: gravitropism	4.19E-03
53	GO:0009733: response to auxin	4.20E-03
54	GO:0030163: protein catabolic process	4.37E-03
55	GO:0009639: response to red or far red light	4.56E-03
56	GO:0009627: systemic acquired resistance	5.55E-03
57	GO:0006281: DNA repair	5.69E-03
58	GO:0010411: xyloglucan metabolic process	5.76E-03
59	GO:0010311: lateral root formation	6.39E-03
60	GO:0010218: response to far red light	6.61E-03
61	GO:0048527: lateral root development	6.83E-03
62	GO:0006865: amino acid transport	7.05E-03
63	GO:0009637: response to blue light	7.28E-03
64	GO:0030001: metal ion transport	7.97E-03
65	GO:0010114: response to red light	8.68E-03
66	GO:0009640: photomorphogenesis	8.68E-03
67	GO:0009416: response to light stimulus	1.01E-02
68	GO:0006857: oligopeptide transport	1.12E-02
69	GO:0009624: response to nematode	1.37E-02
70	GO:0006633: fatty acid biosynthetic process	1.89E-02
71	GO:0040008: regulation of growth	1.96E-02
72	GO:0007623: circadian rhythm	2.02E-02
73	GO:0042742: defense response to bacterium	2.05E-02
74	GO:0006470: protein dephosphorylation	2.23E-02
75	GO:0009658: chloroplast organization	2.76E-02
76	GO:0009723: response to ethylene	3.06E-02
77	GO:0005975: carbohydrate metabolic process	3.12E-02
78	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.30E-02
79	GO:0015979: photosynthesis	3.54E-02
80	GO:0045454: cell redox homeostasis	3.66E-02
81	GO:0006869: lipid transport	3.91E-02
82	GO:0032259: methylation	4.12E-02
83	GO:0006629: lipid metabolic process	4.25E-02
84	GO:0007165: signal transduction	4.26E-02
85	GO:0048364: root development	4.38E-02
86	GO:0009753: response to jasmonic acid	4.46E-02

Rank	GO Term	Adjusted P value
1	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
2	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
3	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
4	GO:0042389: omega-3 fatty acid desaturase activity	9.09E-05
5	GO:0003839: gamma-glutamylcyclotransferase activity	9.09E-05
6	GO:0030570: pectate lyase activity	1.20E-04
7	GO:0016829: lyase activity	1.36E-04
8	GO:0090729: toxin activity	1.58E-04
9	GO:0080054: low-affinity nitrate transmembrane transporter activity	1.58E-04
10	GO:0016851: magnesium chelatase activity	2.33E-04
11	GO:0016791: phosphatase activity	2.57E-04
12	GO:0009044: xylan 1,4-beta-xylosidase activity	3.14E-04
13	GO:0046556: alpha-L-arabinofuranosidase activity	3.14E-04
14	GO:0010011: auxin binding	3.14E-04
15	GO:0010328: auxin influx transmembrane transporter activity	3.14E-04
16	GO:0008725: DNA-3-methyladenine glycosylase activity	4.01E-04
17	GO:0031177: phosphopantetheine binding	4.92E-04
18	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	4.92E-04
19	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	4.92E-04
20	GO:0000035: acyl binding	5.88E-04
21	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	7.90E-04
22	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	8.97E-04
23	GO:0004650: polygalacturonase activity	1.10E-03
24	GO:0031072: heat shock protein binding	1.62E-03
25	GO:0010329: auxin efflux transmembrane transporter activity	1.62E-03
26	GO:0046872: metal ion binding	2.20E-03
27	GO:0003756: protein disulfide isomerase activity	2.96E-03
28	GO:0004518: nuclease activity	4.19E-03
29	GO:0051015: actin filament binding	4.37E-03
30	GO:0004722: protein serine/threonine phosphatase activity	5.07E-03
31	GO:0015250: water channel activity	5.15E-03
32	GO:0008236: serine-type peptidase activity	5.97E-03
33	GO:0003993: acid phosphatase activity	7.51E-03
34	GO:0015293: symporter activity	9.42E-03
35	GO:0015171: amino acid transmembrane transporter activity	1.15E-02
36	GO:0051082: unfolded protein binding	1.37E-02
37	GO:0016746: transferase activity, transferring acyl groups	1.40E-02
38	GO:0004252: serine-type endopeptidase activity	1.73E-02
39	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.92E-02
40	GO:0005215: transporter activity	2.27E-02
41	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.40E-02
42	GO:0043531: ADP binding	2.95E-02
43	GO:0004871: signal transducer activity	3.78E-02

Rank	GO Term	Adjusted P value
1	GO:0043674: columella	3.64E-05
2	GO:0010007: magnesium chelatase complex	1.58E-04
3	GO:0005576: extracellular region	2.28E-04
4	GO:0005618: cell wall	2.31E-04
5	GO:0042807: central vacuole	6.87E-04
6	GO:0009986: cell surface	6.87E-04
7	GO:0009533: chloroplast stromal thylakoid	6.87E-04
8	GO:0008180: COP9 signalosome	1.01E-03
9	GO:0016020: membrane	1.88E-03
10	GO:0009534: chloroplast thylakoid	1.89E-03
11	GO:0015629: actin cytoskeleton	2.80E-03
12	GO:0009505: plant-type cell wall	4.82E-03
13	GO:0005886: plasma membrane	5.29E-03
14	GO:0019005: SCF ubiquitin ligase complex	6.18E-03
15	GO:0009941: chloroplast envelope	6.37E-03
16	GO:0005856: cytoskeleton	9.42E-03
17	GO:0009507: chloroplast	1.00E-02
18	GO:0009535: chloroplast thylakoid membrane	1.01E-02
19	GO:0009570: chloroplast stroma	1.06E-02
20	GO:0000502: proteasome complex	1.07E-02
21	GO:0010008: endosome membrane	1.23E-02
22	GO:0031225: anchored component of membrane	1.58E-02
23	GO:0005768: endosome	1.85E-02
24	GO:0009705: plant-type vacuole membrane	2.02E-02
25	GO:0031969: chloroplast membrane	3.22E-02
26	GO:0005783: endoplasmic reticulum	4.20E-02