Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G25240

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006971: hypotonic response0.00E+00
2GO:0006792: regulation of sulfur utilization0.00E+00
3GO:1901038: cyanidin 3-O-glucoside metabolic process0.00E+00
4GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
5GO:0010200: response to chitin5.75E-07
6GO:0010411: xyloglucan metabolic process1.50E-06
7GO:0030154: cell differentiation6.16E-06
8GO:0042546: cell wall biogenesis7.89E-06
9GO:0009718: anthocyanin-containing compound biosynthetic process2.84E-05
10GO:0010438: cellular response to sulfur starvation5.76E-05
11GO:0000271: polysaccharide biosynthetic process1.49E-04
12GO:0009751: response to salicylic acid1.58E-04
13GO:0009741: response to brassinosteroid1.66E-04
14GO:0045489: pectin biosynthetic process1.66E-04
15GO:0055063: sulfate ion homeostasis2.25E-04
16GO:0046500: S-adenosylmethionine metabolic process2.25E-04
17GO:1901537: positive regulation of DNA demethylation2.25E-04
18GO:0009962: regulation of flavonoid biosynthetic process2.25E-04
19GO:2000029: regulation of proanthocyanidin biosynthetic process2.25E-04
20GO:0050691: regulation of defense response to virus by host2.25E-04
21GO:0033481: galacturonate biosynthetic process2.25E-04
22GO:0048438: floral whorl development2.25E-04
23GO:0010583: response to cyclopentenone2.45E-04
24GO:0006357: regulation of transcription from RNA polymerase II promoter3.04E-04
25GO:2000693: positive regulation of seed maturation5.00E-04
26GO:0031542: positive regulation of anthocyanin biosynthetic process5.00E-04
27GO:0071497: cellular response to freezing5.00E-04
28GO:0010220: positive regulation of vernalization response5.00E-04
29GO:1900386: positive regulation of flavonol biosynthetic process5.00E-04
30GO:0071395: cellular response to jasmonic acid stimulus5.00E-04
31GO:0009813: flavonoid biosynthetic process5.51E-04
32GO:0071555: cell wall organization6.32E-04
33GO:0019419: sulfate reduction8.13E-04
34GO:0010581: regulation of starch biosynthetic process8.13E-04
35GO:0080168: abscisic acid transport8.13E-04
36GO:0005992: trehalose biosynthetic process9.55E-04
37GO:0006355: regulation of transcription, DNA-templated1.09E-03
38GO:1902358: sulfate transmembrane transport1.16E-03
39GO:0031347: regulation of defense response1.21E-03
40GO:2000022: regulation of jasmonic acid mediated signaling pathway1.25E-03
41GO:0009411: response to UV1.36E-03
42GO:0040007: growth1.36E-03
43GO:0009826: unidimensional cell growth1.41E-03
44GO:0019722: calcium-mediated signaling1.48E-03
45GO:0046345: abscisic acid catabolic process1.54E-03
46GO:0006544: glycine metabolic process1.97E-03
47GO:0071368: cellular response to cytokinin stimulus1.97E-03
48GO:0016131: brassinosteroid metabolic process1.97E-03
49GO:2000762: regulation of phenylpropanoid metabolic process1.97E-03
50GO:0048510: regulation of timing of transition from vegetative to reproductive phase2.30E-03
51GO:0046777: protein autophosphorylation2.30E-03
52GO:0042732: D-xylose metabolic process2.43E-03
53GO:0009267: cellular response to starvation2.43E-03
54GO:0000060: protein import into nucleus, translocation2.43E-03
55GO:0060918: auxin transport2.43E-03
56GO:1902456: regulation of stomatal opening2.43E-03
57GO:0047484: regulation of response to osmotic stress2.43E-03
58GO:0006563: L-serine metabolic process2.43E-03
59GO:0009828: plant-type cell wall loosening2.78E-03
60GO:0045893: positive regulation of transcription, DNA-templated2.89E-03
61GO:0010077: maintenance of inflorescence meristem identity2.91E-03
62GO:1901001: negative regulation of response to salt stress2.91E-03
63GO:0010076: maintenance of floral meristem identity2.91E-03
64GO:0007267: cell-cell signaling2.95E-03
65GO:0050829: defense response to Gram-negative bacterium3.43E-03
66GO:0051510: regulation of unidimensional cell growth3.43E-03
67GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.50E-03
68GO:0035265: organ growth3.98E-03
69GO:0030162: regulation of proteolysis3.98E-03
70GO:0070413: trehalose metabolism in response to stress3.98E-03
71GO:0010439: regulation of glucosinolate biosynthetic process3.98E-03
72GO:2000070: regulation of response to water deprivation3.98E-03
73GO:0009753: response to jasmonic acid4.17E-03
74GO:0010099: regulation of photomorphogenesis4.56E-03
75GO:0044030: regulation of DNA methylation4.56E-03
76GO:2000031: regulation of salicylic acid mediated signaling pathway4.56E-03
77GO:0009739: response to gibberellin5.01E-03
78GO:0006351: transcription, DNA-templated5.08E-03
79GO:0019432: triglyceride biosynthetic process5.16E-03
80GO:0051865: protein autoubiquitination5.16E-03
81GO:0016051: carbohydrate biosynthetic process5.46E-03
82GO:0009638: phototropism5.79E-03
83GO:0035999: tetrahydrofolate interconversion5.79E-03
84GO:0051555: flavonol biosynthetic process6.45E-03
85GO:0000103: sulfate assimilation6.45E-03
86GO:0043069: negative regulation of programmed cell death6.45E-03
87GO:0010015: root morphogenesis7.13E-03
88GO:0000038: very long-chain fatty acid metabolic process7.13E-03
89GO:2000652: regulation of secondary cell wall biogenesis7.13E-03
90GO:0009698: phenylpropanoid metabolic process7.13E-03
91GO:1903507: negative regulation of nucleic acid-templated transcription7.13E-03
92GO:0000272: polysaccharide catabolic process7.13E-03
93GO:0016024: CDP-diacylglycerol biosynthetic process7.84E-03
94GO:0010582: floral meristem determinacy7.84E-03
95GO:0016925: protein sumoylation7.84E-03
96GO:0009738: abscisic acid-activated signaling pathway8.52E-03
97GO:0030036: actin cytoskeleton organization8.57E-03
98GO:0018107: peptidyl-threonine phosphorylation8.57E-03
99GO:0009723: response to ethylene9.11E-03
100GO:0048467: gynoecium development9.33E-03
101GO:0034605: cellular response to heat9.33E-03
102GO:0010143: cutin biosynthetic process9.33E-03
103GO:0002237: response to molecule of bacterial origin9.33E-03
104GO:0010540: basipetal auxin transport9.33E-03
105GO:0009585: red, far-red light phototransduction9.50E-03
106GO:0009733: response to auxin9.54E-03
107GO:0009969: xyloglucan biosynthetic process1.01E-02
108GO:0009225: nucleotide-sugar metabolic process1.01E-02
109GO:0005985: sucrose metabolic process1.01E-02
110GO:0006636: unsaturated fatty acid biosynthetic process1.09E-02
111GO:0019344: cysteine biosynthetic process1.17E-02
112GO:2000377: regulation of reactive oxygen species metabolic process1.17E-02
113GO:0006487: protein N-linked glycosylation1.17E-02
114GO:0045454: cell redox homeostasis1.25E-02
115GO:0019953: sexual reproduction1.26E-02
116GO:0010026: trichome differentiation1.26E-02
117GO:0016998: cell wall macromolecule catabolic process1.34E-02
118GO:0010017: red or far-red light signaling pathway1.43E-02
119GO:0009742: brassinosteroid mediated signaling pathway1.44E-02
120GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.53E-02
121GO:0010214: seed coat development1.62E-02
122GO:0010584: pollen exine formation1.62E-02
123GO:0010118: stomatal movement1.81E-02
124GO:0048653: anther development1.81E-02
125GO:0010268: brassinosteroid homeostasis1.91E-02
126GO:0009958: positive gravitropism1.91E-02
127GO:0016567: protein ubiquitination1.97E-02
128GO:0009791: post-embryonic development2.11E-02
129GO:0002229: defense response to oomycetes2.22E-02
130GO:0016132: brassinosteroid biosynthetic process2.22E-02
131GO:0040008: regulation of growth2.24E-02
132GO:0009873: ethylene-activated signaling pathway2.25E-02
133GO:0009414: response to water deprivation2.49E-02
134GO:0016125: sterol metabolic process2.54E-02
135GO:0019760: glucosinolate metabolic process2.54E-02
136GO:0009639: response to red or far red light2.54E-02
137GO:0009737: response to abscisic acid2.85E-02
138GO:0001666: response to hypoxia2.88E-02
139GO:0048573: photoperiodism, flowering3.24E-02
140GO:0016311: dephosphorylation3.36E-02
141GO:0016049: cell growth3.36E-02
142GO:0048481: plant ovule development3.48E-02
143GO:0035556: intracellular signal transduction3.58E-02
144GO:0048767: root hair elongation3.61E-02
145GO:0010218: response to far red light3.73E-02
146GO:0048527: lateral root development3.86E-02
147GO:0010119: regulation of stomatal movement3.86E-02
148GO:0006970: response to osmotic stress3.91E-02
149GO:0009860: pollen tube growth3.91E-02
150GO:0009867: jasmonic acid mediated signaling pathway4.12E-02
151GO:0009637: response to blue light4.12E-02
152GO:0048366: leaf development4.27E-02
153GO:0080167: response to karrikin4.49E-02
154GO:0042542: response to hydrogen peroxide4.79E-02
155GO:0044550: secondary metabolite biosynthetic process4.87E-02
156GO:0006468: protein phosphorylation4.89E-02
157GO:0010114: response to red light4.93E-02
RankGO TermAdjusted P value
1GO:0016711: flavonoid 3'-monooxygenase activity0.00E+00
2GO:0045552: dihydrokaempferol 4-reductase activity0.00E+00
3GO:0090411: brassinosteroid binding0.00E+00
4GO:0102580: cyanidin 3-O-glucoside 2-O''-xylosyltransferase activity0.00E+00
5GO:0047890: flavanone 4-reductase activity0.00E+00
6GO:0016762: xyloglucan:xyloglucosyl transferase activity1.19E-05
7GO:0043565: sequence-specific DNA binding3.56E-05
8GO:0016798: hydrolase activity, acting on glycosyl bonds3.56E-05
9GO:0035252: UDP-xylosyltransferase activity8.46E-05
10GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting9.94E-05
11GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding1.29E-04
12GO:0044212: transcription regulatory region DNA binding1.56E-04
13GO:0080132: fatty acid alpha-hydroxylase activity2.25E-04
14GO:0090440: abscisic acid transporter activity2.25E-04
15GO:0004805: trehalose-phosphatase activity4.12E-04
16GO:0033741: adenylyl-sulfate reductase (glutathione) activity5.00E-04
17GO:0050736: O-malonyltransferase activity5.00E-04
18GO:0048531: beta-1,3-galactosyltransferase activity5.00E-04
19GO:0009973: adenylyl-sulfate reductase activity5.00E-04
20GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity5.00E-04
21GO:0003700: transcription factor activity, sequence-specific DNA binding5.73E-04
22GO:0010295: (+)-abscisic acid 8'-hydroxylase activity8.13E-04
23GO:0016757: transferase activity, transferring glycosyl groups1.13E-03
24GO:0033843: xyloglucan 6-xylosyltransferase activity1.16E-03
25GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity1.16E-03
26GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.25E-03
27GO:0045430: chalcone isomerase activity1.54E-03
28GO:0050378: UDP-glucuronate 4-epimerase activity1.54E-03
29GO:0004372: glycine hydroxymethyltransferase activity1.97E-03
30GO:0031386: protein tag1.97E-03
31GO:0004366: glycerol-3-phosphate O-acyltransferase activity2.43E-03
32GO:0010427: abscisic acid binding2.43E-03
33GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity2.43E-03
34GO:0016791: phosphatase activity2.78E-03
35GO:0016758: transferase activity, transferring hexosyl groups2.79E-03
36GO:0016161: beta-amylase activity2.91E-03
37GO:0004674: protein serine/threonine kinase activity2.93E-03
38GO:0016621: cinnamoyl-CoA reductase activity3.43E-03
39GO:0019899: enzyme binding3.43E-03
40GO:0008271: secondary active sulfate transmembrane transporter activity4.56E-03
41GO:0016207: 4-coumarate-CoA ligase activity5.16E-03
42GO:0004864: protein phosphatase inhibitor activity6.45E-03
43GO:0008327: methyl-CpG binding7.13E-03
44GO:0005506: iron ion binding7.59E-03
45GO:0015116: sulfate transmembrane transporter activity7.84E-03
46GO:0000976: transcription regulatory region sequence-specific DNA binding7.84E-03
47GO:0003712: transcription cofactor activity1.01E-02
48GO:0031625: ubiquitin protein ligase binding1.05E-02
49GO:0003714: transcription corepressor activity1.17E-02
50GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.36E-02
51GO:0004842: ubiquitin-protein transferase activity1.37E-02
52GO:0004672: protein kinase activity1.52E-02
53GO:0019825: oxygen binding1.53E-02
54GO:0003677: DNA binding1.55E-02
55GO:0020037: heme binding1.72E-02
56GO:0004402: histone acetyltransferase activity1.81E-02
57GO:0001085: RNA polymerase II transcription factor binding1.91E-02
58GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding1.94E-02
59GO:0050662: coenzyme binding2.01E-02
60GO:0004872: receptor activity2.11E-02
61GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.43E-02
62GO:0016759: cellulose synthase activity2.54E-02
63GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity2.65E-02
64GO:0005200: structural constituent of cytoskeleton2.65E-02
65GO:0008375: acetylglucosaminyltransferase activity3.12E-02
66GO:0009931: calcium-dependent protein serine/threonine kinase activity3.12E-02
67GO:0004806: triglyceride lipase activity3.24E-02
68GO:0046982: protein heterodimerization activity3.56E-02
69GO:0015238: drug transmembrane transporter activity3.61E-02
70GO:0003682: chromatin binding3.84E-02
71GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding3.86E-02
72GO:0046983: protein dimerization activity3.93E-02
73GO:0016740: transferase activity4.28E-02
74GO:0004185: serine-type carboxypeptidase activity4.93E-02
RankGO TermAdjusted P value
1GO:0090568: nuclear transcriptional repressor complex0.00E+00
2GO:0031225: anchored component of membrane3.49E-04
3GO:0042406: extrinsic component of endoplasmic reticulum membrane8.13E-04
4GO:0048046: apoplast1.34E-03
5GO:0010369: chromocenter2.91E-03
6GO:0005794: Golgi apparatus3.43E-03
7GO:0009505: plant-type cell wall3.52E-03
8GO:0005615: extracellular space5.01E-03
9GO:0046658: anchored component of plasma membrane6.20E-03
10GO:0000139: Golgi membrane1.32E-02
11GO:0005770: late endosome1.91E-02
12GO:0032580: Golgi cisterna membrane2.54E-02
13GO:0005667: transcription factor complex3.12E-02
14GO:0005886: plasma membrane3.16E-02
15GO:0005618: cell wall3.22E-02
16GO:0009506: plasmodesma3.34E-02
17GO:0019005: SCF ubiquitin ligase complex3.48E-02
18GO:0031902: late endosome membrane4.66E-02
19GO:0016021: integral component of membrane4.81E-02
Gene type



Gene DE type