co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G25110

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006983: ER overload response	0.00E+00
2	GO:0033587: shikimate biosynthetic process	0.00E+00
3	GO:0033542: fatty acid beta-oxidation, unsaturated, even number	0.00E+00
4	GO:0006592: ornithine biosynthetic process	0.00E+00
5	GO:0006593: ornithine catabolic process	0.00E+00
6	GO:0006482: protein demethylation	0.00E+00
7	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
8	GO:0010360: negative regulation of anion channel activity	0.00E+00
9	GO:1901017: negative regulation of potassium ion transmembrane transporter activity	0.00E+00
10	GO:1900425: negative regulation of defense response to bacterium	9.47E-05
11	GO:0006631: fatty acid metabolic process	1.13E-04
12	GO:0019375: galactolipid biosynthetic process	2.19E-04
13	GO:1902361: mitochondrial pyruvate transmembrane transport	2.41E-04
14	GO:0019544: arginine catabolic process to glutamate	2.41E-04
15	GO:0098721: uracil import across plasma membrane	2.41E-04
16	GO:0098702: adenine import across plasma membrane	2.41E-04
17	GO:1903648: positive regulation of chlorophyll catabolic process	2.41E-04
18	GO:0035266: meristem growth	2.41E-04
19	GO:0098710: guanine import across plasma membrane	2.41E-04
20	GO:0007292: female gamete generation	2.41E-04
21	GO:0048482: plant ovule morphogenesis	2.41E-04
22	GO:0060627: regulation of vesicle-mediated transport	2.41E-04
23	GO:1990641: response to iron ion starvation	2.41E-04
24	GO:0006481: C-terminal protein methylation	2.41E-04
25	GO:0010036: response to boron-containing substance	2.41E-04
26	GO:0010184: cytokinin transport	2.41E-04
27	GO:0035344: hypoxanthine transport	2.41E-04
28	GO:0043069: negative regulation of programmed cell death	4.55E-04
29	GO:0043066: negative regulation of apoptotic process	5.34E-04
30	GO:0006850: mitochondrial pyruvate transport	5.34E-04
31	GO:0015865: purine nucleotide transport	5.34E-04
32	GO:0007154: cell communication	5.34E-04
33	GO:0052542: defense response by callose deposition	5.34E-04
34	GO:0080026: response to indolebutyric acid	5.34E-04
35	GO:0060919: auxin influx	5.34E-04
36	GO:0019441: tryptophan catabolic process to kynurenine	5.34E-04
37	GO:0097054: L-glutamate biosynthetic process	5.34E-04
38	GO:0051457: maintenance of protein location in nucleus	5.34E-04
39	GO:0080029: cellular response to boron-containing substance levels	5.34E-04
40	GO:0006672: ceramide metabolic process	5.34E-04
41	GO:0019374: galactolipid metabolic process	5.34E-04
42	GO:0055073: cadmium ion homeostasis	5.34E-04
43	GO:0006101: citrate metabolic process	5.34E-04
44	GO:0051788: response to misfolded protein	5.34E-04
45	GO:0008219: cell death	5.88E-04
46	GO:0051646: mitochondrion localization	8.68E-04
47	GO:0010359: regulation of anion channel activity	8.68E-04
48	GO:0061158: 3'-UTR-mediated mRNA destabilization	8.68E-04
49	GO:0046621: negative regulation of organ growth	8.68E-04
50	GO:0010476: gibberellin mediated signaling pathway	8.68E-04
51	GO:0010325: raffinose family oligosaccharide biosynthetic process	8.68E-04
52	GO:0060968: regulation of gene silencing	8.68E-04
53	GO:0015700: arsenite transport	1.24E-03
54	GO:0071786: endoplasmic reticulum tubular network organization	1.24E-03
55	GO:0080024: indolebutyric acid metabolic process	1.24E-03
56	GO:0001676: long-chain fatty acid metabolic process	1.24E-03
57	GO:0046713: borate transport	1.24E-03
58	GO:0006624: vacuolar protein processing	1.24E-03
59	GO:0046902: regulation of mitochondrial membrane permeability	1.24E-03
60	GO:0072334: UDP-galactose transmembrane transport	1.24E-03
61	GO:0006537: glutamate biosynthetic process	1.24E-03
62	GO:0055114: oxidation-reduction process	1.48E-03
63	GO:0019676: ammonia assimilation cycle	1.65E-03
64	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	1.65E-03
65	GO:0071585: detoxification of cadmium ion	1.65E-03
66	GO:0006468: protein phosphorylation	1.99E-03
67	GO:0006097: glyoxylate cycle	2.11E-03
68	GO:0009247: glycolipid biosynthetic process	2.11E-03
69	GO:0010337: regulation of salicylic acid metabolic process	2.60E-03
70	GO:0006014: D-ribose metabolic process	2.60E-03
71	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	2.60E-03
72	GO:0006561: proline biosynthetic process	2.60E-03
73	GO:0048827: phyllome development	2.60E-03
74	GO:0048232: male gamete generation	2.60E-03
75	GO:0043248: proteasome assembly	2.60E-03
76	GO:0070814: hydrogen sulfide biosynthetic process	2.60E-03
77	GO:0048317: seed morphogenesis	2.60E-03
78	GO:1902456: regulation of stomatal opening	2.60E-03
79	GO:0010315: auxin efflux	2.60E-03
80	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	3.12E-03
81	GO:0098655: cation transmembrane transport	3.12E-03
82	GO:0048444: floral organ morphogenesis	3.12E-03
83	GO:0045454: cell redox homeostasis	3.18E-03
84	GO:0006508: proteolysis	3.25E-03
85	GO:1900057: positive regulation of leaf senescence	3.68E-03
86	GO:0050829: defense response to Gram-negative bacterium	3.68E-03
87	GO:0050790: regulation of catalytic activity	3.68E-03
88	GO:0006955: immune response	3.68E-03
89	GO:0009395: phospholipid catabolic process	3.68E-03
90	GO:0043090: amino acid import	3.68E-03
91	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	3.68E-03
92	GO:0009607: response to biotic stimulus	3.87E-03
93	GO:1900150: regulation of defense response to fungus	4.27E-03
94	GO:0010078: maintenance of root meristem identity	4.27E-03
95	GO:0032875: regulation of DNA endoreduplication	4.27E-03
96	GO:2000070: regulation of response to water deprivation	4.27E-03
97	GO:0006102: isocitrate metabolic process	4.27E-03
98	GO:0009819: drought recovery	4.27E-03
99	GO:0016036: cellular response to phosphate starvation	4.52E-03
100	GO:0009657: plastid organization	4.89E-03
101	GO:0006526: arginine biosynthetic process	4.89E-03
102	GO:0010150: leaf senescence	4.94E-03
103	GO:0048767: root hair elongation	5.01E-03
104	GO:0090333: regulation of stomatal closure	5.54E-03
105	GO:0046916: cellular transition metal ion homeostasis	5.54E-03
106	GO:0009056: catabolic process	5.54E-03
107	GO:0046685: response to arsenic-containing substance	5.54E-03
108	GO:0006098: pentose-phosphate shunt	5.54E-03
109	GO:0009821: alkaloid biosynthetic process	5.54E-03
110	GO:0008202: steroid metabolic process	6.21E-03
111	GO:0071577: zinc II ion transmembrane transport	6.21E-03
112	GO:0006535: cysteine biosynthetic process from serine	6.92E-03
113	GO:0000103: sulfate assimilation	6.92E-03
114	GO:0048829: root cap development	6.92E-03
115	GO:0006995: cellular response to nitrogen starvation	6.92E-03
116	GO:0010015: root morphogenesis	7.65E-03
117	GO:0000038: very long-chain fatty acid metabolic process	7.65E-03
118	GO:0051707: response to other organism	7.79E-03
119	GO:0006790: sulfur compound metabolic process	8.41E-03
120	GO:0055046: microgametogenesis	9.20E-03
121	GO:0042742: defense response to bacterium	9.32E-03
122	GO:0009933: meristem structural organization	1.00E-02
123	GO:0010540: basipetal auxin transport	1.00E-02
124	GO:0009266: response to temperature stimulus	1.00E-02
125	GO:0009809: lignin biosynthetic process	1.05E-02
126	GO:0090351: seedling development	1.09E-02
127	GO:0046854: phosphatidylinositol phosphorylation	1.09E-02
128	GO:0010167: response to nitrate	1.09E-02
129	GO:0051603: proteolysis involved in cellular protein catabolic process	1.09E-02
130	GO:0006863: purine nucleobase transport	1.17E-02
131	GO:0046777: protein autophosphorylation	1.23E-02
132	GO:0019344: cysteine biosynthetic process	1.26E-02
133	GO:0048367: shoot system development	1.29E-02
134	GO:0006952: defense response	1.29E-02
135	GO:0009626: plant-type hypersensitive response	1.33E-02
136	GO:0031408: oxylipin biosynthetic process	1.45E-02
137	GO:0030433: ubiquitin-dependent ERAD pathway	1.54E-02
138	GO:0010227: floral organ abscission	1.64E-02
139	GO:0006012: galactose metabolic process	1.64E-02
140	GO:0009561: megagametogenesis	1.74E-02
141	GO:0016117: carotenoid biosynthetic process	1.84E-02
142	GO:0042391: regulation of membrane potential	1.95E-02
143	GO:0048364: root development	1.96E-02
144	GO:0009845: seed germination	2.04E-02
145	GO:0006662: glycerol ether metabolic process	2.05E-02
146	GO:0009749: response to glucose	2.27E-02
147	GO:0019252: starch biosynthetic process	2.27E-02
148	GO:0006633: fatty acid biosynthetic process	2.37E-02
149	GO:0002229: defense response to oomycetes	2.38E-02
150	GO:0000302: response to reactive oxygen species	2.38E-02
151	GO:0010193: response to ozone	2.38E-02
152	GO:0006635: fatty acid beta-oxidation	2.38E-02
153	GO:0071554: cell wall organization or biogenesis	2.38E-02
154	GO:0009630: gravitropism	2.50E-02
155	GO:0030163: protein catabolic process	2.62E-02
156	GO:0006464: cellular protein modification process	2.73E-02
157	GO:0009651: response to salt stress	2.86E-02
158	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.91E-02
159	GO:0007166: cell surface receptor signaling pathway	2.97E-02
160	GO:0051607: defense response to virus	2.98E-02
161	GO:0006979: response to oxidative stress	3.03E-02
162	GO:0010029: regulation of seed germination	3.23E-02
163	GO:0009816: defense response to bacterium, incompatible interaction	3.23E-02
164	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.23E-02
165	GO:0006950: response to stress	3.48E-02
166	GO:0016311: dephosphorylation	3.61E-02
167	GO:0009738: abscisic acid-activated signaling pathway	3.65E-02
168	GO:0009817: defense response to fungus, incompatible interaction	3.75E-02
169	GO:0010311: lateral root formation	3.88E-02
170	GO:0010218: response to far red light	4.01E-02
171	GO:0006499: N-terminal protein myristoylation	4.01E-02
172	GO:0009407: toxin catabolic process	4.01E-02
173	GO:0010043: response to zinc ion	4.15E-02
174	GO:0010119: regulation of stomatal movement	4.15E-02
175	GO:0006865: amino acid transport	4.29E-02
176	GO:0016051: carbohydrate biosynthetic process	4.43E-02
177	GO:0009637: response to blue light	4.43E-02
178	GO:0045087: innate immune response	4.43E-02
179	GO:0034599: cellular response to oxidative stress	4.57E-02
180	GO:0006099: tricarboxylic acid cycle	4.57E-02
181	GO:0030001: metal ion transport	4.86E-02
182	GO:0006839: mitochondrial transport	4.86E-02
183	GO:0080167: response to karrikin	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
2	GO:0051723: protein methylesterase activity	0.00E+00
3	GO:0008777: acetylornithine deacetylase activity	0.00E+00
4	GO:0015211: purine nucleoside transmembrane transporter activity	0.00E+00
5	GO:0080138: borate uptake transmembrane transporter activity	0.00E+00
6	GO:0004587: ornithine-oxo-acid transaminase activity	0.00E+00
7	GO:0015930: glutamate synthase activity	0.00E+00
8	GO:0009916: alternative oxidase activity	4.05E-05
9	GO:0015207: adenine transmembrane transporter activity	2.41E-04
10	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	2.41E-04
11	GO:0016041: glutamate synthase (ferredoxin) activity	2.41E-04
12	GO:0004671: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity	2.41E-04
13	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	2.41E-04
14	GO:0015208: guanine transmembrane transporter activity	2.41E-04
15	GO:0015294: solute:cation symporter activity	2.41E-04
16	GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity	2.41E-04
17	GO:0008234: cysteine-type peptidase activity	2.60E-04
18	GO:0051213: dioxygenase activity	4.19E-04
19	GO:0004061: arylformamidase activity	5.34E-04
20	GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	5.34E-04
21	GO:0015036: disulfide oxidoreductase activity	5.34E-04
22	GO:0010331: gibberellin binding	5.34E-04
23	GO:0015105: arsenite transmembrane transporter activity	5.34E-04
24	GO:0003994: aconitate hydratase activity	5.34E-04
25	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	5.34E-04
26	GO:0050833: pyruvate transmembrane transporter activity	8.68E-04
27	GO:0004781: sulfate adenylyltransferase (ATP) activity	8.68E-04
28	GO:0000975: regulatory region DNA binding	8.68E-04
29	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	8.68E-04
30	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.24E-03
31	GO:0046715: borate transmembrane transporter activity	1.24E-03
32	GO:0004300: enoyl-CoA hydratase activity	1.24E-03
33	GO:0004674: protein serine/threonine kinase activity	1.43E-03
34	GO:0005516: calmodulin binding	1.53E-03
35	GO:0015210: uracil transmembrane transporter activity	1.65E-03
36	GO:0010328: auxin influx transmembrane transporter activity	1.65E-03
37	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	2.11E-03
38	GO:0031386: protein tag	2.11E-03
39	GO:0051538: 3 iron, 4 sulfur cluster binding	2.11E-03
40	GO:0005471: ATP:ADP antiporter activity	2.11E-03
41	GO:0005459: UDP-galactose transmembrane transporter activity	2.11E-03
42	GO:0015035: protein disulfide oxidoreductase activity	2.56E-03
43	GO:0036402: proteasome-activating ATPase activity	2.60E-03
44	GO:0004197: cysteine-type endopeptidase activity	2.71E-03
45	GO:0004747: ribokinase activity	3.12E-03
46	GO:0003978: UDP-glucose 4-epimerase activity	3.12E-03
47	GO:0004124: cysteine synthase activity	3.12E-03
48	GO:0051920: peroxiredoxin activity	3.12E-03
49	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.12E-03
50	GO:0102391: decanoate--CoA ligase activity	3.12E-03
51	GO:0004012: phospholipid-translocating ATPase activity	3.12E-03
52	GO:0004467: long-chain fatty acid-CoA ligase activity	3.68E-03
53	GO:0102425: myricetin 3-O-glucosyltransferase activity	3.68E-03
54	GO:0102360: daphnetin 3-O-glucosyltransferase activity	3.68E-03
55	GO:0008121: ubiquinol-cytochrome-c reductase activity	3.68E-03
56	GO:0016787: hydrolase activity	4.18E-03
57	GO:0008865: fructokinase activity	4.27E-03
58	GO:0016209: antioxidant activity	4.27E-03
59	GO:0047893: flavonol 3-O-glucosyltransferase activity	4.27E-03
60	GO:0052747: sinapyl alcohol dehydrogenase activity	4.27E-03
61	GO:0016491: oxidoreductase activity	4.74E-03
62	GO:0008142: oxysterol binding	4.89E-03
63	GO:0004630: phospholipase D activity	4.89E-03
64	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	4.89E-03
65	GO:0046914: transition metal ion binding	4.89E-03
66	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	5.54E-03
67	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	6.04E-03
68	GO:0047617: acyl-CoA hydrolase activity	6.21E-03
69	GO:0051539: 4 iron, 4 sulfur cluster binding	6.89E-03
70	GO:0008794: arsenate reductase (glutaredoxin) activity	7.65E-03
71	GO:0008559: xenobiotic-transporting ATPase activity	7.65E-03
72	GO:0003680: AT DNA binding	7.65E-03
73	GO:0045551: cinnamyl-alcohol dehydrogenase activity	8.41E-03
74	GO:0016301: kinase activity	8.49E-03
75	GO:0004601: peroxidase activity	8.61E-03
76	GO:0010329: auxin efflux transmembrane transporter activity	9.20E-03
77	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	9.20E-03
78	GO:0004175: endopeptidase activity	1.00E-02
79	GO:0043565: sequence-specific DNA binding	1.07E-02
80	GO:0004190: aspartic-type endopeptidase activity	1.09E-02
81	GO:0030552: cAMP binding	1.09E-02
82	GO:0030553: cGMP binding	1.09E-02
83	GO:0017025: TBP-class protein binding	1.09E-02
84	GO:0046872: metal ion binding	1.17E-02
85	GO:0005385: zinc ion transmembrane transporter activity	1.26E-02
86	GO:0003954: NADH dehydrogenase activity	1.26E-02
87	GO:0043130: ubiquitin binding	1.26E-02
88	GO:0008324: cation transmembrane transporter activity	1.35E-02
89	GO:0005345: purine nucleobase transmembrane transporter activity	1.35E-02
90	GO:0005216: ion channel activity	1.35E-02
91	GO:0035251: UDP-glucosyltransferase activity	1.45E-02
92	GO:0003727: single-stranded RNA binding	1.74E-02
93	GO:0047134: protein-disulfide reductase activity	1.84E-02
94	GO:0005524: ATP binding	1.91E-02
95	GO:0005249: voltage-gated potassium channel activity	1.95E-02
96	GO:0030551: cyclic nucleotide binding	1.95E-02
97	GO:0009055: electron carrier activity	2.03E-02
98	GO:0046873: metal ion transmembrane transporter activity	2.05E-02
99	GO:0030170: pyridoxal phosphate binding	2.09E-02
100	GO:0004791: thioredoxin-disulfide reductase activity	2.16E-02
101	GO:0019901: protein kinase binding	2.27E-02
102	GO:0048038: quinone binding	2.38E-02
103	GO:0008137: NADH dehydrogenase (ubiquinone) activity	2.38E-02
104	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.42E-02
105	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.62E-02
106	GO:0008237: metallopeptidase activity	2.85E-02
107	GO:0008483: transaminase activity	2.85E-02
108	GO:0016597: amino acid binding	2.98E-02
109	GO:0016413: O-acetyltransferase activity	2.98E-02
110	GO:0015250: water channel activity	3.10E-02
111	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.35E-02
112	GO:0004683: calmodulin-dependent protein kinase activity	3.48E-02
113	GO:0015238: drug transmembrane transporter activity	3.88E-02
114	GO:0003993: acid phosphatase activity	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0098687: chromosomal region	0.00E+00
2	GO:0046862: chromoplast membrane	0.00E+00
3	GO:0005886: plasma membrane	1.70E-04
4	GO:0031314: extrinsic component of mitochondrial inner membrane	5.34E-04
5	GO:0031304: intrinsic component of mitochondrial inner membrane	5.34E-04
6	GO:0016328: lateral plasma membrane	8.68E-04
7	GO:0005777: peroxisome	8.99E-04
8	GO:0070469: respiratory chain	1.16E-03
9	GO:0071782: endoplasmic reticulum tubular network	1.24E-03
10	GO:0000323: lytic vacuole	1.24E-03
11	GO:0016021: integral component of membrane	2.57E-03
12	GO:0031597: cytosolic proteasome complex	3.12E-03
13	GO:0030173: integral component of Golgi membrane	3.12E-03
14	GO:0031595: nuclear proteasome complex	3.68E-03
15	GO:0031305: integral component of mitochondrial inner membrane	4.27E-03
16	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	4.27E-03
17	GO:0008540: proteasome regulatory particle, base subcomplex	6.21E-03
18	GO:0005789: endoplasmic reticulum membrane	6.34E-03
19	GO:0005783: endoplasmic reticulum	9.17E-03
20	GO:0005764: lysosome	1.00E-02
21	GO:0005750: mitochondrial respiratory chain complex III	1.00E-02
22	GO:0030176: integral component of endoplasmic reticulum membrane	1.09E-02
23	GO:0005773: vacuole	1.17E-02
24	GO:0005743: mitochondrial inner membrane	1.69E-02
25	GO:0005770: late endosome	2.05E-02
26	GO:0071944: cell periphery	2.62E-02
27	GO:0005887: integral component of plasma membrane	2.73E-02
28	GO:0005778: peroxisomal membrane	2.85E-02
29	GO:0005829: cytosol	3.04E-02
30	GO:0009707: chloroplast outer membrane	3.75E-02
31	GO:0016020: membrane	3.92E-02
32	GO:0009536: plastid	4.03E-02
33	GO:0005737: cytoplasm	4.54E-02