Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G24930

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009661: chromoplast organization0.00E+00
2GO:1903508: positive regulation of nucleic acid-templated transcription0.00E+00
3GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
4GO:1902171: regulation of tocopherol cyclase activity0.00E+00
5GO:1901918: negative regulation of exoribonuclease activity0.00E+00
6GO:0046677: response to antibiotic0.00E+00
7GO:0050821: protein stabilization1.02E-05
8GO:0015995: chlorophyll biosynthetic process1.04E-05
9GO:0010114: response to red light2.76E-05
10GO:0050992: dimethylallyl diphosphate biosynthetic process8.48E-05
11GO:1904143: positive regulation of carotenoid biosynthetic process8.48E-05
12GO:0042548: regulation of photosynthesis, light reaction8.48E-05
13GO:2000306: positive regulation of photomorphogenesis2.95E-04
14GO:0016123: xanthophyll biosynthetic process3.77E-04
15GO:0016120: carotene biosynthetic process3.77E-04
16GO:0007568: aging4.23E-04
17GO:0006655: phosphatidylglycerol biosynthetic process4.63E-04
18GO:0009643: photosynthetic acclimation4.63E-04
19GO:0009637: response to blue light4.63E-04
20GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.63E-04
21GO:0045962: positive regulation of development, heterochronic4.63E-04
22GO:0015979: photosynthesis4.74E-04
23GO:0010189: vitamin E biosynthetic process5.53E-04
24GO:0009640: photomorphogenesis5.92E-04
25GO:0051510: regulation of unidimensional cell growth6.47E-04
26GO:0080186: developmental vegetative growth6.47E-04
27GO:0019745: pentacyclic triterpenoid biosynthetic process6.47E-04
28GO:0009642: response to light intensity7.44E-04
29GO:0009657: plastid organization8.45E-04
30GO:0010206: photosystem II repair9.49E-04
31GO:0048507: meristem development9.49E-04
32GO:0055114: oxidation-reduction process1.13E-03
33GO:0009688: abscisic acid biosynthetic process1.17E-03
34GO:0043085: positive regulation of catalytic activity1.28E-03
35GO:0016024: CDP-diacylglycerol biosynthetic process1.40E-03
36GO:0018107: peptidyl-threonine phosphorylation1.52E-03
37GO:0009768: photosynthesis, light harvesting in photosystem I2.19E-03
38GO:0009686: gibberellin biosynthetic process2.63E-03
39GO:0010089: xylem development2.78E-03
40GO:0006468: protein phosphorylation3.02E-03
41GO:0006662: glycerol ether metabolic process3.25E-03
42GO:0010182: sugar mediated signaling pathway3.25E-03
43GO:0009741: response to brassinosteroid3.25E-03
44GO:0010305: leaf vascular tissue pattern formation3.25E-03
45GO:0008654: phospholipid biosynthetic process3.59E-03
46GO:0009791: post-embryonic development3.59E-03
47GO:0016032: viral process3.93E-03
48GO:0010027: thylakoid membrane organization4.83E-03
49GO:0016311: dephosphorylation5.60E-03
50GO:0018298: protein-chromophore linkage5.79E-03
51GO:0010218: response to far red light6.20E-03
52GO:0009910: negative regulation of flower development6.40E-03
53GO:0034599: cellular response to oxidative stress7.04E-03
54GO:0006631: fatty acid metabolic process7.69E-03
55GO:0009965: leaf morphogenesis8.82E-03
56GO:0006417: regulation of translation1.08E-02
57GO:0009740: gibberellic acid mediated signaling pathway1.23E-02
58GO:0009624: response to nematode1.28E-02
59GO:0018105: peptidyl-serine phosphorylation1.31E-02
60GO:0006396: RNA processing1.31E-02
61GO:0009742: brassinosteroid mediated signaling pathway1.34E-02
62GO:0009790: embryo development1.68E-02
63GO:0007623: circadian rhythm1.89E-02
64GO:0010150: leaf senescence1.89E-02
65GO:0007166: cell surface receptor signaling pathway2.08E-02
66GO:0009826: unidimensional cell growth2.51E-02
67GO:0009658: chloroplast organization2.58E-02
68GO:0006970: response to osmotic stress2.72E-02
69GO:0005975: carbohydrate metabolic process2.84E-02
70GO:0009723: response to ethylene2.87E-02
71GO:0048366: leaf development2.90E-02
72GO:0080167: response to karrikin3.01E-02
73GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.08E-02
74GO:0044550: secondary metabolite biosynthetic process3.20E-02
75GO:0045454: cell redox homeostasis3.42E-02
76GO:0045892: negative regulation of transcription, DNA-templated3.46E-02
77GO:0032259: methylation3.85E-02
78GO:0009408: response to heat3.97E-02
79GO:0006397: mRNA processing4.10E-02
80GO:0048364: root development4.10E-02
81GO:0016310: phosphorylation4.57E-02
RankGO TermAdjusted P value
1GO:0045550: geranylgeranyl reductase activity0.00E+00
2GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity0.00E+00
3GO:0009899: ent-kaurene synthase activity0.00E+00
4GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
5GO:0009540: zeaxanthin epoxidase [overall] activity0.00E+00
6GO:0016871: cycloartenol synthase activity0.00E+00
7GO:0004462: lactoylglutathione lyase activity3.75E-06
8GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity3.37E-05
9GO:0019172: glyoxalase III activity8.48E-05
10GO:0016868: intramolecular transferase activity, phosphotransferases8.48E-05
11GO:0016805: dipeptidase activity1.47E-04
12GO:0004180: carboxypeptidase activity1.47E-04
13GO:0010277: chlorophyllide a oxygenase [overall] activity1.47E-04
14GO:0004672: protein kinase activity1.51E-04
15GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.18E-04
16GO:0051538: 3 iron, 4 sulfur cluster binding3.77E-04
17GO:0004605: phosphatidate cytidylyltransferase activity4.63E-04
18GO:0071949: FAD binding9.49E-04
19GO:0008047: enzyme activator activity1.17E-03
20GO:0004674: protein serine/threonine kinase activity1.37E-03
21GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.40E-03
22GO:0004022: alcohol dehydrogenase (NAD) activity1.52E-03
23GO:0031409: pigment binding1.91E-03
24GO:0003727: single-stranded RNA binding2.78E-03
25GO:0047134: protein-disulfide reductase activity2.94E-03
26GO:0004791: thioredoxin-disulfide reductase activity3.42E-03
27GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.10E-03
28GO:0016168: chlorophyll binding5.02E-03
29GO:0003993: acid phosphatase activity7.04E-03
30GO:0051537: 2 iron, 2 sulfur cluster binding8.60E-03
31GO:0043621: protein self-association8.60E-03
32GO:0016301: kinase activity1.17E-02
33GO:0016874: ligase activity1.23E-02
34GO:0015035: protein disulfide oxidoreductase activity1.31E-02
35GO:0016829: lyase activity1.59E-02
36GO:0004252: serine-type endopeptidase activity1.62E-02
37GO:0005506: iron ion binding1.84E-02
38GO:0008168: methyltransferase activity2.51E-02
39GO:0000287: magnesium ion binding2.55E-02
40GO:0004497: monooxygenase activity3.01E-02
41GO:0005524: ATP binding3.05E-02
42GO:0004871: signal transducer activity3.54E-02
43GO:0003924: GTPase activity3.97E-02
RankGO TermAdjusted P value
1GO:0009535: chloroplast thylakoid membrane2.89E-07
2GO:0009534: chloroplast thylakoid1.14E-06
3GO:0009507: chloroplast3.59E-06
4GO:0009941: chloroplast envelope4.62E-06
5GO:0009570: chloroplast stroma1.48E-05
6GO:0031969: chloroplast membrane2.95E-05
7GO:0042651: thylakoid membrane7.90E-05
8GO:0009706: chloroplast inner membrane1.10E-03
9GO:0010287: plastoglobule1.29E-03
10GO:0030076: light-harvesting complex1.78E-03
11GO:0009522: photosystem I3.42E-03
12GO:0009523: photosystem II3.59E-03
13GO:0031977: thylakoid lumen7.69E-03
14GO:0009579: thylakoid1.10E-02
15GO:0009543: chloroplast thylakoid lumen1.51E-02
16GO:0005623: cell1.54E-02
17GO:0009536: plastid2.29E-02
18GO:0005789: endoplasmic reticulum membrane2.86E-02
Gene type



Gene DE type