co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G23630

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032889: regulation of vacuole fusion, non-autophagic	0.00E+00
2	GO:2000636: positive regulation of primary miRNA processing	0.00E+00
3	GO:0006848: pyruvate transport	0.00E+00
4	GO:2000630: positive regulation of miRNA metabolic process	0.00E+00
5	GO:0032012: regulation of ARF protein signal transduction	3.55E-10
6	GO:0055071: manganese ion homeostasis	5.18E-05
7	GO:0099636: cytoplasmic streaming	5.18E-05
8	GO:0031338: regulation of vesicle fusion	5.18E-05
9	GO:0051014: actin filament severing	5.18E-05
10	GO:0006886: intracellular protein transport	1.23E-04
11	GO:0016197: endosomal transport	1.27E-04
12	GO:0048209: regulation of vesicle targeting, to, from or within Golgi	1.27E-04
13	GO:0001736: establishment of planar polarity	1.27E-04
14	GO:0031204: posttranslational protein targeting to membrane, translocation	1.27E-04
15	GO:0032509: endosome transport via multivesicular body sorting pathway	1.27E-04
16	GO:0010372: positive regulation of gibberellin biosynthetic process	1.27E-04
17	GO:0035542: regulation of SNARE complex assembly	1.27E-04
18	GO:0006487: protein N-linked glycosylation	1.30E-04
19	GO:0006397: mRNA processing	1.80E-04
20	GO:0090630: activation of GTPase activity	2.17E-04
21	GO:0006517: protein deglycosylation	2.17E-04
22	GO:0006013: mannose metabolic process	2.17E-04
23	GO:0009845: seed germination	2.55E-04
24	GO:0080119: ER body organization	3.17E-04
25	GO:0051601: exocyst localization	3.17E-04
26	GO:0019048: modulation by virus of host morphology or physiology	3.17E-04
27	GO:0015743: malate transport	4.24E-04
28	GO:0051764: actin crosslink formation	4.24E-04
29	GO:0000919: cell plate assembly	4.24E-04
30	GO:0016579: protein deubiquitination	4.57E-04
31	GO:0034052: positive regulation of plant-type hypersensitive response	5.39E-04
32	GO:0048573: photoperiodism, flowering	5.66E-04
33	GO:0006751: glutathione catabolic process	6.60E-04
34	GO:0006828: manganese ion transport	6.60E-04
35	GO:0033962: cytoplasmic mRNA processing body assembly	7.87E-04
36	GO:0009942: longitudinal axis specification	7.87E-04
37	GO:0000911: cytokinesis by cell plate formation	7.87E-04
38	GO:0048528: post-embryonic root development	9.18E-04
39	GO:0051693: actin filament capping	9.18E-04
40	GO:0006897: endocytosis	9.22E-04
41	GO:0006402: mRNA catabolic process	1.06E-03
42	GO:0007155: cell adhesion	1.06E-03
43	GO:0006491: N-glycan processing	1.06E-03
44	GO:0009932: cell tip growth	1.20E-03
45	GO:0009880: embryonic pattern specification	1.20E-03
46	GO:0060321: acceptance of pollen	1.20E-03
47	GO:0001510: RNA methylation	1.20E-03
48	GO:0006417: regulation of translation	1.46E-03
49	GO:0016571: histone methylation	1.50E-03
50	GO:0090332: stomatal closure	1.50E-03
51	GO:0030042: actin filament depolymerization	1.50E-03
52	GO:0006298: mismatch repair	1.67E-03
53	GO:0048765: root hair cell differentiation	1.84E-03
54	GO:0006816: calcium ion transport	1.84E-03
55	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	2.01E-03
56	GO:2000012: regulation of auxin polar transport	2.19E-03
57	GO:0010102: lateral root morphogenesis	2.19E-03
58	GO:0007015: actin filament organization	2.38E-03
59	GO:0010540: basipetal auxin transport	2.38E-03
60	GO:0034605: cellular response to heat	2.38E-03
61	GO:0007033: vacuole organization	2.56E-03
62	GO:0080188: RNA-directed DNA methylation	2.56E-03
63	GO:0009790: embryo development	2.70E-03
64	GO:0051017: actin filament bundle assembly	2.96E-03
65	GO:0006289: nucleotide-excision repair	2.96E-03
66	GO:0007010: cytoskeleton organization	2.96E-03
67	GO:0009695: jasmonic acid biosynthetic process	3.16E-03
68	GO:0006418: tRNA aminoacylation for protein translation	3.16E-03
69	GO:0009686: gibberellin biosynthetic process	3.80E-03
70	GO:0009306: protein secretion	4.03E-03
71	GO:0051028: mRNA transport	4.26E-03
72	GO:0008284: positive regulation of cell proliferation	4.26E-03
73	GO:0042147: retrograde transport, endosome to Golgi	4.26E-03
74	GO:0010501: RNA secondary structure unwinding	4.49E-03
75	GO:0010087: phloem or xylem histogenesis	4.49E-03
76	GO:0009826: unidimensional cell growth	4.72E-03
77	GO:0006814: sodium ion transport	4.96E-03
78	GO:0006635: fatty acid beta-oxidation	5.46E-03
79	GO:0031047: gene silencing by RNA	5.71E-03
80	GO:0016032: viral process	5.71E-03
81	GO:0071805: potassium ion transmembrane transport	6.49E-03
82	GO:0009911: positive regulation of flower development	7.04E-03
83	GO:0009816: defense response to bacterium, incompatible interaction	7.31E-03
84	GO:0009627: systemic acquired resistance	7.59E-03
85	GO:0008219: cell death	8.46E-03
86	GO:0048767: root hair elongation	8.76E-03
87	GO:0010311: lateral root formation	8.76E-03
88	GO:0015031: protein transport	8.79E-03
89	GO:0009910: negative regulation of flower development	9.36E-03
90	GO:0009631: cold acclimation	9.36E-03
91	GO:0006887: exocytosis	1.13E-02
92	GO:0042546: cell wall biogenesis	1.23E-02
93	GO:0000209: protein polyubiquitination	1.23E-02
94	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.37E-02
95	GO:0009846: pollen germination	1.40E-02
96	GO:0042538: hyperosmotic salinity response	1.40E-02
97	GO:0006813: potassium ion transport	1.47E-02
98	GO:0009909: regulation of flower development	1.58E-02
99	GO:0009626: plant-type hypersensitive response	1.74E-02
100	GO:0009742: brassinosteroid mediated signaling pathway	1.97E-02
101	GO:0000398: mRNA splicing, via spliceosome	2.10E-02
102	GO:0006511: ubiquitin-dependent protein catabolic process	2.17E-02
103	GO:0040008: regulation of growth	2.70E-02
104	GO:0010228: vegetative to reproductive phase transition of meristem	2.88E-02
105	GO:0009651: response to salt stress	2.99E-02
106	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.03E-02
107	GO:0006470: protein dephosphorylation	3.07E-02
108	GO:0008380: RNA splicing	3.17E-02
109	GO:0006970: response to osmotic stress	4.02E-02
110	GO:0009860: pollen tube growth	4.02E-02
111	GO:0016192: vesicle-mediated transport	4.60E-02
112	GO:0046777: protein autophosphorylation	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0050513: glycoprotein 2-beta-D-xylosyltransferase activity	0.00E+00
2	GO:0015410: manganese-transporting ATPase activity	0.00E+00
3	GO:0016428: tRNA (cytosine-5-)-methyltransferase activity	0.00E+00
4	GO:0017168: 5-oxoprolinase (ATP-hydrolyzing) activity	0.00E+00
5	GO:0004572: mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity	0.00E+00
6	GO:0010292: GTP:GDP antiporter activity	0.00E+00
7	GO:0005086: ARF guanyl-nucleotide exchange factor activity	5.17E-09
8	GO:0003730: mRNA 3'-UTR binding	1.10E-05
9	GO:0008692: 3-hydroxybutyryl-CoA epimerase activity	5.18E-05
10	GO:0003729: mRNA binding	7.05E-05
11	GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity	1.27E-04
12	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	1.60E-04
13	GO:0050833: pyruvate transmembrane transporter activity	2.17E-04
14	GO:0004165: dodecenoyl-CoA delta-isomerase activity	3.17E-04
15	GO:0004300: enoyl-CoA hydratase activity	3.17E-04
16	GO:0000285: 1-phosphatidylinositol-3-phosphate 5-kinase activity	3.17E-04
17	GO:0004843: thiol-dependent ubiquitin-specific protease activity	3.35E-04
18	GO:0005253: anion channel activity	4.24E-04
19	GO:0042285: xylosyltransferase activity	5.39E-04
20	GO:0017137: Rab GTPase binding	5.39E-04
21	GO:0005096: GTPase activator activity	6.55E-04
22	GO:0004559: alpha-mannosidase activity	7.87E-04
23	GO:0003950: NAD+ ADP-ribosyltransferase activity	7.87E-04
24	GO:0005085: guanyl-nucleotide exchange factor activity	9.18E-04
25	GO:0015140: malate transmembrane transporter activity	9.18E-04
26	GO:0004722: protein serine/threonine phosphatase activity	1.12E-03
27	GO:0001104: RNA polymerase II transcription cofactor activity	1.20E-03
28	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	1.67E-03
29	GO:0003779: actin binding	1.81E-03
30	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.84E-03
31	GO:0015386: potassium:proton antiporter activity	1.84E-03
32	GO:0008026: ATP-dependent helicase activity	1.97E-03
33	GO:0019888: protein phosphatase regulator activity	2.19E-03
34	GO:0005388: calcium-transporting ATPase activity	2.19E-03
35	GO:0015079: potassium ion transmembrane transporter activity	3.16E-03
36	GO:0043424: protein histidine kinase binding	3.16E-03
37	GO:0042802: identical protein binding	4.04E-03
38	GO:0004812: aminoacyl-tRNA ligase activity	4.26E-03
39	GO:0030276: clathrin binding	4.72E-03
40	GO:0004518: nuclease activity	5.71E-03
41	GO:0015385: sodium:proton antiporter activity	5.97E-03
42	GO:0051015: actin filament binding	5.97E-03
43	GO:0003684: damaged DNA binding	6.23E-03
44	GO:0004004: ATP-dependent RNA helicase activity	7.88E-03
45	GO:0003697: single-stranded DNA binding	9.99E-03
46	GO:0000149: SNARE binding	1.06E-02
47	GO:0005198: structural molecule activity	1.30E-02
48	GO:0004386: helicase activity	2.01E-02
49	GO:0015297: antiporter activity	2.70E-02
50	GO:0003723: RNA binding	2.73E-02
51	GO:0008168: methyltransferase activity	3.71E-02
52	GO:0005515: protein binding	3.90E-02
53	GO:0003682: chromatin binding	3.97E-02
54	GO:0008233: peptidase activity	4.39E-02
55	GO:0004497: monooxygenase activity	4.44E-02
56	GO:0061630: ubiquitin protein ligase activity	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0071942: XPC complex	0.00E+00
2	GO:0000111: nucleotide-excision repair factor 2 complex	0.00E+00
3	GO:0005829: cytosol	8.37E-06
4	GO:0010494: cytoplasmic stress granule	3.26E-05
5	GO:0016442: RISC complex	5.18E-05
6	GO:0030897: HOPS complex	1.27E-04
7	GO:0005802: trans-Golgi network	1.35E-04
8	GO:0005768: endosome	1.75E-04
9	GO:0005797: Golgi medial cisterna	2.17E-04
10	GO:0000139: Golgi membrane	3.82E-04
11	GO:0000932: P-body	4.83E-04
12	GO:0070847: core mediator complex	6.60E-04
13	GO:0016363: nuclear matrix	7.87E-04
14	GO:0031902: late endosome membrane	9.22E-04
15	GO:0005856: cytoskeleton	1.11E-03
16	GO:0015030: Cajal body	1.50E-03
17	GO:0005681: spliceosomal complex	1.56E-03
18	GO:0010008: endosome membrane	1.60E-03
19	GO:0012505: endomembrane system	1.81E-03
20	GO:0048471: perinuclear region of cytoplasm	1.84E-03
21	GO:0000159: protein phosphatase type 2A complex	1.84E-03
22	GO:0005765: lysosomal membrane	1.84E-03
23	GO:0005884: actin filament	1.84E-03
24	GO:0031307: integral component of mitochondrial outer membrane	2.01E-03
25	GO:0009506: plasmodesma	2.04E-03
26	GO:0019013: viral nucleocapsid	2.19E-03
27	GO:0043234: protein complex	2.76E-03
28	GO:0005777: peroxisome	3.16E-03
29	GO:0009705: plant-type vacuole membrane	3.19E-03
30	GO:0005794: Golgi apparatus	3.96E-03
31	GO:0000145: exocyst	5.71E-03
32	GO:0016592: mediator complex	5.71E-03
33	GO:0032580: Golgi cisterna membrane	6.23E-03
34	GO:0030529: intracellular ribonucleoprotein complex	7.04E-03
35	GO:0015934: large ribosomal subunit	9.36E-03
36	GO:0031966: mitochondrial membrane	1.40E-02
37	GO:0005635: nuclear envelope	1.55E-02
38	GO:0005623: cell	2.26E-02
39	GO:0009524: phragmoplast	2.31E-02
40	GO:0005622: intracellular	2.84E-02
41	GO:0031969: chloroplast membrane	4.44E-02