Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G23060

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033494: ferulate metabolic process0.00E+00
2GO:0042821: pyridoxal biosynthetic process0.00E+00
3GO:0007638: mechanosensory behavior0.00E+00
4GO:0042820: vitamin B6 catabolic process0.00E+00
5GO:0009773: photosynthetic electron transport in photosystem I2.13E-15
6GO:0015979: photosynthesis5.06E-11
7GO:0015976: carbon utilization3.45E-07
8GO:0006810: transport1.30E-05
9GO:0009409: response to cold4.96E-05
10GO:0010037: response to carbon dioxide5.13E-05
11GO:2000122: negative regulation of stomatal complex development5.13E-05
12GO:0010207: photosystem II assembly5.55E-05
13GO:0055114: oxidation-reduction process6.20E-05
14GO:0018298: protein-chromophore linkage7.70E-05
15GO:0006636: unsaturated fatty acid biosynthetic process7.90E-05
16GO:0016120: carotene biosynthetic process8.14E-05
17GO:0006633: fatty acid biosynthetic process1.78E-04
18GO:0042335: cuticle development2.27E-04
19GO:1904964: positive regulation of phytol biosynthetic process2.77E-04
20GO:0033481: galacturonate biosynthetic process2.77E-04
21GO:0042371: vitamin K biosynthetic process2.77E-04
22GO:1902458: positive regulation of stomatal opening2.77E-04
23GO:0071588: hydrogen peroxide mediated signaling pathway2.77E-04
24GO:0010729: positive regulation of hydrogen peroxide biosynthetic process2.77E-04
25GO:0051180: vitamin transport2.77E-04
26GO:0009443: pyridoxal 5'-phosphate salvage2.77E-04
27GO:0030974: thiamine pyrophosphate transport2.77E-04
28GO:0046520: sphingoid biosynthetic process2.77E-04
29GO:1904966: positive regulation of vitamin E biosynthetic process2.77E-04
30GO:0032544: plastid translation3.32E-04
31GO:0010205: photoinhibition4.74E-04
32GO:0009658: chloroplast organization4.89E-04
33GO:0042254: ribosome biogenesis5.05E-04
34GO:0006729: tetrahydrobiopterin biosynthetic process6.09E-04
35GO:1903426: regulation of reactive oxygen species biosynthetic process6.09E-04
36GO:0030388: fructose 1,6-bisphosphate metabolic process6.09E-04
37GO:0010024: phytochromobilin biosynthetic process6.09E-04
38GO:1902326: positive regulation of chlorophyll biosynthetic process6.09E-04
39GO:0010115: regulation of abscisic acid biosynthetic process6.09E-04
40GO:0015893: drug transport6.09E-04
41GO:0018119: peptidyl-cysteine S-nitrosylation6.38E-04
42GO:0000038: very long-chain fatty acid metabolic process6.38E-04
43GO:0009735: response to cytokinin8.58E-04
44GO:0019253: reductive pentose-phosphate cycle9.28E-04
45GO:0071492: cellular response to UV-A9.88E-04
46GO:0006696: ergosterol biosynthetic process9.88E-04
47GO:0015714: phosphoenolpyruvate transport9.88E-04
48GO:0006000: fructose metabolic process9.88E-04
49GO:0090391: granum assembly9.88E-04
50GO:0006788: heme oxidation9.88E-04
51GO:0071555: cell wall organization1.23E-03
52GO:0042742: defense response to bacterium1.23E-03
53GO:0009768: photosynthesis, light harvesting in photosystem I1.40E-03
54GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.41E-03
55GO:0007231: osmosensory signaling pathway1.41E-03
56GO:0071484: cellular response to light intensity1.41E-03
57GO:0061077: chaperone-mediated protein folding1.54E-03
58GO:0009644: response to high light intensity1.54E-03
59GO:0031408: oxylipin biosynthetic process1.54E-03
60GO:0009956: radial pattern formation1.89E-03
61GO:0071486: cellular response to high light intensity1.89E-03
62GO:0019464: glycine decarboxylation via glycine cleavage system1.89E-03
63GO:0009765: photosynthesis, light harvesting1.89E-03
64GO:0045727: positive regulation of translation1.89E-03
65GO:0033500: carbohydrate homeostasis1.89E-03
66GO:0031122: cytoplasmic microtubule organization1.89E-03
67GO:0006546: glycine catabolic process1.89E-03
68GO:0042991: transcription factor import into nucleus1.89E-03
69GO:0015713: phosphoglycerate transport1.89E-03
70GO:0016117: carotenoid biosynthetic process2.16E-03
71GO:0045038: protein import into chloroplast thylakoid membrane2.41E-03
72GO:0006461: protein complex assembly2.41E-03
73GO:0016123: xanthophyll biosynthetic process2.41E-03
74GO:0006656: phosphatidylcholine biosynthetic process2.41E-03
75GO:0006564: L-serine biosynthetic process2.41E-03
76GO:0010236: plastoquinone biosynthetic process2.41E-03
77GO:0010182: sugar mediated signaling pathway2.51E-03
78GO:0006561: proline biosynthetic process2.98E-03
79GO:0010405: arabinogalactan protein metabolic process2.98E-03
80GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.98E-03
81GO:0009913: epidermal cell differentiation2.98E-03
82GO:0006086: acetyl-CoA biosynthetic process from pyruvate2.98E-03
83GO:0018258: protein O-linked glycosylation via hydroxyproline2.98E-03
84GO:0010189: vitamin E biosynthetic process3.58E-03
85GO:0010019: chloroplast-nucleus signaling pathway3.58E-03
86GO:0009955: adaxial/abaxial pattern specification3.58E-03
87GO:0006694: steroid biosynthetic process3.58E-03
88GO:1901259: chloroplast rRNA processing3.58E-03
89GO:0009395: phospholipid catabolic process4.23E-03
90GO:0009772: photosynthetic electron transport in photosystem II4.23E-03
91GO:0030497: fatty acid elongation4.23E-03
92GO:0010196: nonphotochemical quenching4.23E-03
93GO:0009645: response to low light intensity stimulus4.23E-03
94GO:0010444: guard mother cell differentiation4.23E-03
95GO:0050829: defense response to Gram-negative bacterium4.23E-03
96GO:0006400: tRNA modification4.23E-03
97GO:0045454: cell redox homeostasis4.33E-03
98GO:0010027: thylakoid membrane organization4.47E-03
99GO:2000070: regulation of response to water deprivation4.90E-03
100GO:0007155: cell adhesion4.90E-03
101GO:0008610: lipid biosynthetic process4.90E-03
102GO:0030091: protein repair4.90E-03
103GO:0042255: ribosome assembly4.90E-03
104GO:0006869: lipid transport4.99E-03
105GO:0010411: xyloglucan metabolic process5.26E-03
106GO:0009808: lignin metabolic process5.62E-03
107GO:0006002: fructose 6-phosphate metabolic process5.62E-03
108GO:0015996: chlorophyll catabolic process5.62E-03
109GO:0007186: G-protein coupled receptor signaling pathway5.62E-03
110GO:0009657: plastid organization5.62E-03
111GO:0016042: lipid catabolic process5.70E-03
112GO:0010206: photosystem II repair6.37E-03
113GO:0045490: pectin catabolic process6.39E-03
114GO:0010119: regulation of stomatal movement6.75E-03
115GO:0009688: abscisic acid biosynthetic process7.97E-03
116GO:0019538: protein metabolic process7.97E-03
117GO:0006839: mitochondrial transport8.43E-03
118GO:0009750: response to fructose8.82E-03
119GO:0010015: root morphogenesis8.82E-03
120GO:0006816: calcium ion transport8.82E-03
121GO:0045037: protein import into chloroplast stroma9.70E-03
122GO:0042546: cell wall biogenesis9.94E-03
123GO:0009725: response to hormone1.06E-02
124GO:0006094: gluconeogenesis1.06E-02
125GO:0005986: sucrose biosynthetic process1.06E-02
126GO:0006006: glucose metabolic process1.06E-02
127GO:0010143: cutin biosynthetic process1.16E-02
128GO:0009933: meristem structural organization1.16E-02
129GO:0070588: calcium ion transmembrane transport1.25E-02
130GO:0009225: nucleotide-sugar metabolic process1.25E-02
131GO:0005985: sucrose metabolic process1.25E-02
132GO:0009736: cytokinin-activated signaling pathway1.29E-02
133GO:0019762: glucosinolate catabolic process1.35E-02
134GO:0010025: wax biosynthetic process1.35E-02
135GO:0006487: protein N-linked glycosylation1.46E-02
136GO:0000027: ribosomal large subunit assembly1.46E-02
137GO:0006096: glycolytic process1.53E-02
138GO:0009695: jasmonic acid biosynthetic process1.56E-02
139GO:0016998: cell wall macromolecule catabolic process1.67E-02
140GO:0030245: cellulose catabolic process1.78E-02
141GO:0009294: DNA mediated transformation1.89E-02
142GO:0042127: regulation of cell proliferation2.01E-02
143GO:0019722: calcium-mediated signaling2.01E-02
144GO:0055085: transmembrane transport2.03E-02
145GO:0032259: methylation2.27E-02
146GO:0010305: leaf vascular tissue pattern formation2.37E-02
147GO:0015986: ATP synthesis coupled proton transport2.50E-02
148GO:0009791: post-embryonic development2.63E-02
149GO:0048825: cotyledon development2.63E-02
150GO:0016132: brassinosteroid biosynthetic process2.76E-02
151GO:0048510: regulation of timing of transition from vegetative to reproductive phase2.76E-02
152GO:0000302: response to reactive oxygen species2.76E-02
153GO:0002229: defense response to oomycetes2.76E-02
154GO:0032502: developmental process2.89E-02
155GO:1901657: glycosyl compound metabolic process3.02E-02
156GO:0007267: cell-cell signaling3.30E-02
157GO:0016126: sterol biosynthetic process3.58E-02
158GO:0042128: nitrate assimilation3.87E-02
159GO:0015995: chlorophyll biosynthetic process4.02E-02
160GO:0006412: translation4.12E-02
161GO:0009817: defense response to fungus, incompatible interaction4.33E-02
162GO:0000160: phosphorelay signal transduction system4.48E-02
163GO:0010218: response to far red light4.64E-02
164GO:0009834: plant-type secondary cell wall biogenesis4.64E-02
165GO:0009407: toxin catabolic process4.64E-02
166GO:0007568: aging4.79E-02
167GO:0009631: cold acclimation4.79E-02
168GO:0009416: response to light stimulus4.87E-02
RankGO TermAdjusted P value
1GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
2GO:1990534: thermospermine oxidase activity0.00E+00
3GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
4GO:0050614: delta24-sterol reductase activity0.00E+00
5GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
6GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
7GO:0010301: xanthoxin dehydrogenase activity0.00E+00
8GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
9GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
10GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
11GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
12GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
13GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
14GO:0045435: lycopene epsilon cyclase activity0.00E+00
15GO:0046905: phytoene synthase activity0.00E+00
16GO:0051920: peroxiredoxin activity1.81E-08
17GO:0019843: rRNA binding3.46E-08
18GO:0016209: antioxidant activity6.43E-08
19GO:0016168: chlorophyll binding2.47E-06
20GO:0004089: carbonate dehydratase activity4.57E-05
21GO:0016788: hydrolase activity, acting on ester bonds8.32E-05
22GO:0022891: substrate-specific transmembrane transporter activity1.61E-04
23GO:0052689: carboxylic ester hydrolase activity1.68E-04
24GO:0004033: aldo-keto reductase (NADP) activity2.69E-04
25GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity2.77E-04
26GO:0000170: sphingosine hydroxylase activity2.77E-04
27GO:0047259: glucomannan 4-beta-mannosyltransferase activity2.77E-04
28GO:0004560: alpha-L-fucosidase activity2.77E-04
29GO:0090422: thiamine pyrophosphate transporter activity2.77E-04
30GO:0015121: phosphoenolpyruvate:phosphate antiporter activity2.77E-04
31GO:0008568: microtubule-severing ATPase activity2.77E-04
32GO:0004321: fatty-acyl-CoA synthase activity2.77E-04
33GO:0051996: squalene synthase activity2.77E-04
34GO:0045485: omega-6 fatty acid desaturase activity2.77E-04
35GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.77E-04
36GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water3.32E-04
37GO:0042389: omega-3 fatty acid desaturase activity6.09E-04
38GO:0004617: phosphoglycerate dehydrogenase activity6.09E-04
39GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.09E-04
40GO:0042284: sphingolipid delta-4 desaturase activity6.09E-04
41GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity6.09E-04
42GO:0004310: farnesyl-diphosphate farnesyltransferase activity6.09E-04
43GO:0000234: phosphoethanolamine N-methyltransferase activity6.09E-04
44GO:0008967: phosphoglycolate phosphatase activity6.09E-04
45GO:0070402: NADPH binding9.88E-04
46GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor9.88E-04
47GO:0050734: hydroxycinnamoyltransferase activity9.88E-04
48GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.15E-03
49GO:0031409: pigment binding1.15E-03
50GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.15E-03
51GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.15E-03
52GO:0005528: FK506 binding1.27E-03
53GO:0004375: glycine dehydrogenase (decarboxylating) activity1.41E-03
54GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity1.41E-03
55GO:0030570: pectate lyase activity1.83E-03
56GO:0015120: phosphoglycerate transmembrane transporter activity1.89E-03
57GO:0004659: prenyltransferase activity1.89E-03
58GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.89E-03
59GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity1.89E-03
60GO:0052793: pectin acetylesterase activity1.89E-03
61GO:0004506: squalene monooxygenase activity1.89E-03
62GO:0050378: UDP-glucuronate 4-epimerase activity1.89E-03
63GO:0043495: protein anchor1.89E-03
64GO:0004392: heme oxygenase (decyclizing) activity1.89E-03
65GO:0004601: peroxidase activity2.37E-03
66GO:0009922: fatty acid elongase activity2.41E-03
67GO:1990714: hydroxyproline O-galactosyltransferase activity2.98E-03
68GO:0004130: cytochrome-c peroxidase activity2.98E-03
69GO:0016688: L-ascorbate peroxidase activity2.98E-03
70GO:0016762: xyloglucan:xyloglucosyl transferase activity3.09E-03
71GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.58E-03
72GO:0033743: peptide-methionine (R)-S-oxide reductase activity3.58E-03
73GO:0051753: mannan synthase activity3.58E-03
74GO:0019899: enzyme binding4.23E-03
75GO:0052747: sinapyl alcohol dehydrogenase activity4.90E-03
76GO:0003824: catalytic activity4.95E-03
77GO:0016798: hydrolase activity, acting on glycosyl bonds5.26E-03
78GO:0008135: translation factor activity, RNA binding5.62E-03
79GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds6.30E-03
80GO:0016207: 4-coumarate-CoA ligase activity6.37E-03
81GO:0016491: oxidoreductase activity7.07E-03
82GO:0003746: translation elongation factor activity7.40E-03
83GO:0030234: enzyme regulator activity7.97E-03
84GO:0045551: cinnamyl-alcohol dehydrogenase activity9.70E-03
85GO:0008289: lipid binding9.84E-03
86GO:0031072: heat shock protein binding1.06E-02
87GO:0005262: calcium channel activity1.06E-02
88GO:0004565: beta-galactosidase activity1.06E-02
89GO:0004022: alcohol dehydrogenase (NAD) activity1.06E-02
90GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.12E-02
91GO:0051287: NAD binding1.16E-02
92GO:0008131: primary amine oxidase activity1.16E-02
93GO:0008266: poly(U) RNA binding1.16E-02
94GO:0008146: sulfotransferase activity1.25E-02
95GO:0003690: double-stranded DNA binding1.34E-02
96GO:0004857: enzyme inhibitor activity1.46E-02
97GO:0003735: structural constituent of ribosome1.57E-02
98GO:0030599: pectinesterase activity1.73E-02
99GO:0008810: cellulase activity1.89E-02
100GO:0016746: transferase activity, transferring acyl groups1.90E-02
101GO:0003727: single-stranded RNA binding2.01E-02
102GO:0008514: organic anion transmembrane transporter activity2.01E-02
103GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.37E-02
104GO:0050662: coenzyme binding2.50E-02
105GO:0005516: calmodulin binding2.61E-02
106GO:0009055: electron carrier activity2.62E-02
107GO:0004872: receptor activity2.63E-02
108GO:0048038: quinone binding2.76E-02
109GO:0000156: phosphorelay response regulator activity3.02E-02
110GO:0015297: antiporter activity3.04E-02
111GO:0016759: cellulose synthase activity3.16E-02
112GO:0016722: oxidoreductase activity, oxidizing metal ions3.30E-02
113GO:0016597: amino acid binding3.44E-02
114GO:0008375: acetylglucosaminyltransferase activity3.87E-02
115GO:0009931: calcium-dependent protein serine/threonine kinase activity3.87E-02
116GO:0004683: calmodulin-dependent protein kinase activity4.02E-02
117GO:0102483: scopolin beta-glucosidase activity4.02E-02
118GO:0042802: identical protein binding4.04E-02
119GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.17E-02
120GO:0015238: drug transmembrane transporter activity4.48E-02
121GO:0004693: cyclin-dependent protein serine/threonine kinase activity4.64E-02
122GO:0005215: transporter activity4.65E-02
123GO:0008168: methyltransferase activity4.72E-02
124GO:0030145: manganese ion binding4.79E-02
125GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.79E-02
RankGO TermAdjusted P value
1GO:0010240: plastid pyruvate dehydrogenase complex0.00E+00
2GO:0009507: chloroplast1.44E-29
3GO:0009535: chloroplast thylakoid membrane6.37E-24
4GO:0009941: chloroplast envelope1.28E-20
5GO:0048046: apoplast1.12E-15
6GO:0009534: chloroplast thylakoid5.45E-13
7GO:0009570: chloroplast stroma6.59E-13
8GO:0009579: thylakoid7.60E-12
9GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)9.10E-12
10GO:0010319: stromule4.46E-08
11GO:0009543: chloroplast thylakoid lumen6.76E-07
12GO:0030095: chloroplast photosystem II1.43E-06
13GO:0010287: plastoglobule8.98E-06
14GO:0009523: photosystem II1.92E-05
15GO:0031969: chloroplast membrane1.33E-04
16GO:0009533: chloroplast stromal thylakoid2.13E-04
17GO:0009782: photosystem I antenna complex2.77E-04
18GO:0009515: granal stacked thylakoid2.77E-04
19GO:0009706: chloroplast inner membrane5.34E-04
20GO:0042170: plastid membrane6.09E-04
21GO:0016021: integral component of membrane6.48E-04
22GO:0009528: plastid inner membrane9.88E-04
23GO:0005853: eukaryotic translation elongation factor 1 complex9.88E-04
24GO:0030076: light-harvesting complex1.04E-03
25GO:0031977: thylakoid lumen1.26E-03
26GO:0005840: ribosome1.37E-03
27GO:0009654: photosystem II oxygen evolving complex1.40E-03
28GO:0042651: thylakoid membrane1.40E-03
29GO:0005960: glycine cleavage complex1.41E-03
30GO:0046658: anchored component of plasma membrane1.87E-03
31GO:0009527: plastid outer membrane1.89E-03
32GO:0009505: plant-type cell wall2.03E-03
33GO:0019898: extrinsic component of membrane2.89E-03
34GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)2.98E-03
35GO:0005763: mitochondrial small ribosomal subunit6.37E-03
36GO:0005576: extracellular region7.28E-03
37GO:0005618: cell wall9.56E-03
38GO:0005875: microtubule associated complex1.35E-02
39GO:0016020: membrane1.40E-02
40GO:0009532: plastid stroma1.67E-02
41GO:0009522: photosystem I2.50E-02
42GO:0031225: anchored component of membrane2.75E-02
43GO:0032580: Golgi cisterna membrane3.16E-02
44GO:0009707: chloroplast outer membrane4.33E-02
45GO:0022626: cytosolic ribosome4.61E-02
46GO:0015934: large ribosomal subunit4.79E-02
Gene type



Gene DE type