GO Enrichment Analysis of Co-expressed Genes with
AT5G22640
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 2 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 3 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 4 | GO:0042407: cristae formation | 0.00E+00 |
| 5 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 6 | GO:0006573: valine metabolic process | 0.00E+00 |
| 7 | GO:0006437: tyrosyl-tRNA aminoacylation | 0.00E+00 |
| 8 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 9 | GO:0006418: tRNA aminoacylation for protein translation | 1.88E-06 |
| 10 | GO:0032544: plastid translation | 5.32E-06 |
| 11 | GO:0043572: plastid fission | 1.90E-05 |
| 12 | GO:0010020: chloroplast fission | 3.31E-05 |
| 13 | GO:0009658: chloroplast organization | 3.40E-05 |
| 14 | GO:0061077: chaperone-mediated protein folding | 7.61E-05 |
| 15 | GO:0042026: protein refolding | 1.13E-04 |
| 16 | GO:0000413: protein peptidyl-prolyl isomerization | 1.43E-04 |
| 17 | GO:0006438: valyl-tRNA aminoacylation | 2.20E-04 |
| 18 | GO:0006426: glycyl-tRNA aminoacylation | 2.20E-04 |
| 19 | GO:0006551: leucine metabolic process | 2.20E-04 |
| 20 | GO:0006436: tryptophanyl-tRNA aminoacylation | 2.20E-04 |
| 21 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.41E-04 |
| 22 | GO:0006782: protoporphyrinogen IX biosynthetic process | 4.00E-04 |
| 23 | GO:0006810: transport | 4.01E-04 |
| 24 | GO:0006415: translational termination | 4.63E-04 |
| 25 | GO:0018119: peptidyl-cysteine S-nitrosylation | 4.63E-04 |
| 26 | GO:0006695: cholesterol biosynthetic process | 4.90E-04 |
| 27 | GO:0010069: zygote asymmetric cytokinesis in embryo sac | 4.90E-04 |
| 28 | GO:0006423: cysteinyl-tRNA aminoacylation | 4.90E-04 |
| 29 | GO:0080183: response to photooxidative stress | 4.90E-04 |
| 30 | GO:2000123: positive regulation of stomatal complex development | 4.90E-04 |
| 31 | GO:0010270: photosystem II oxygen evolving complex assembly | 4.90E-04 |
| 32 | GO:0010424: DNA methylation on cytosine within a CG sequence | 4.90E-04 |
| 33 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 4.90E-04 |
| 34 | GO:0043039: tRNA aminoacylation | 4.90E-04 |
| 35 | GO:0045454: cell redox homeostasis | 5.46E-04 |
| 36 | GO:0009767: photosynthetic electron transport chain | 6.01E-04 |
| 37 | GO:0006457: protein folding | 8.78E-04 |
| 38 | GO:0007017: microtubule-based process | 1.02E-03 |
| 39 | GO:0051085: chaperone mediated protein folding requiring cofactor | 1.14E-03 |
| 40 | GO:0010239: chloroplast mRNA processing | 1.14E-03 |
| 41 | GO:0006241: CTP biosynthetic process | 1.14E-03 |
| 42 | GO:0006165: nucleoside diphosphate phosphorylation | 1.14E-03 |
| 43 | GO:0006228: UTP biosynthetic process | 1.14E-03 |
| 44 | GO:0006424: glutamyl-tRNA aminoacylation | 1.14E-03 |
| 45 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.14E-03 |
| 46 | GO:0006412: translation | 1.16E-03 |
| 47 | GO:0051322: anaphase | 1.51E-03 |
| 48 | GO:0009765: photosynthesis, light harvesting | 1.51E-03 |
| 49 | GO:0006183: GTP biosynthetic process | 1.51E-03 |
| 50 | GO:2000038: regulation of stomatal complex development | 1.51E-03 |
| 51 | GO:0006546: glycine catabolic process | 1.51E-03 |
| 52 | GO:0009902: chloroplast relocation | 1.51E-03 |
| 53 | GO:0006808: regulation of nitrogen utilization | 1.51E-03 |
| 54 | GO:0006479: protein methylation | 1.51E-03 |
| 55 | GO:0016117: carotenoid biosynthetic process | 1.56E-03 |
| 56 | GO:0009735: response to cytokinin | 1.84E-03 |
| 57 | GO:0010375: stomatal complex patterning | 1.93E-03 |
| 58 | GO:0016120: carotene biosynthetic process | 1.93E-03 |
| 59 | GO:0032543: mitochondrial translation | 1.93E-03 |
| 60 | GO:0010236: plastoquinone biosynthetic process | 1.93E-03 |
| 61 | GO:0016123: xanthophyll biosynthetic process | 1.93E-03 |
| 62 | GO:0042742: defense response to bacterium | 2.12E-03 |
| 63 | GO:0016554: cytidine to uridine editing | 2.38E-03 |
| 64 | GO:0006828: manganese ion transport | 2.38E-03 |
| 65 | GO:0032973: amino acid export | 2.38E-03 |
| 66 | GO:0006796: phosphate-containing compound metabolic process | 2.38E-03 |
| 67 | GO:0010190: cytochrome b6f complex assembly | 2.38E-03 |
| 68 | GO:0006014: D-ribose metabolic process | 2.38E-03 |
| 69 | GO:0042549: photosystem II stabilization | 2.38E-03 |
| 70 | GO:0015979: photosynthesis | 2.42E-03 |
| 71 | GO:0009955: adaxial/abaxial pattern specification | 2.86E-03 |
| 72 | GO:0010067: procambium histogenesis | 2.86E-03 |
| 73 | GO:1901259: chloroplast rRNA processing | 2.86E-03 |
| 74 | GO:0009082: branched-chain amino acid biosynthetic process | 2.86E-03 |
| 75 | GO:0006458: 'de novo' protein folding | 2.86E-03 |
| 76 | GO:0009099: valine biosynthetic process | 2.86E-03 |
| 77 | GO:0009854: oxidative photosynthetic carbon pathway | 2.86E-03 |
| 78 | GO:0010555: response to mannitol | 2.86E-03 |
| 79 | GO:0043090: amino acid import | 3.36E-03 |
| 80 | GO:0006826: iron ion transport | 3.36E-03 |
| 81 | GO:0006880: intracellular sequestering of iron ion | 3.36E-03 |
| 82 | GO:0045995: regulation of embryonic development | 3.36E-03 |
| 83 | GO:0048528: post-embryonic root development | 3.36E-03 |
| 84 | GO:0015995: chlorophyll biosynthetic process | 3.78E-03 |
| 85 | GO:0048564: photosystem I assembly | 3.90E-03 |
| 86 | GO:0008610: lipid biosynthetic process | 3.90E-03 |
| 87 | GO:0009642: response to light intensity | 3.90E-03 |
| 88 | GO:0000105: histidine biosynthetic process | 3.90E-03 |
| 89 | GO:0048481: plant ovule development | 4.19E-03 |
| 90 | GO:0009657: plastid organization | 4.47E-03 |
| 91 | GO:0009097: isoleucine biosynthetic process | 4.47E-03 |
| 92 | GO:0045337: farnesyl diphosphate biosynthetic process | 5.06E-03 |
| 93 | GO:0010206: photosystem II repair | 5.06E-03 |
| 94 | GO:0080144: amino acid homeostasis | 5.06E-03 |
| 95 | GO:0033384: geranyl diphosphate biosynthetic process | 5.06E-03 |
| 96 | GO:0006783: heme biosynthetic process | 5.06E-03 |
| 97 | GO:0009853: photorespiration | 5.30E-03 |
| 98 | GO:0043067: regulation of programmed cell death | 5.68E-03 |
| 99 | GO:1900865: chloroplast RNA modification | 5.68E-03 |
| 100 | GO:0006349: regulation of gene expression by genetic imprinting | 5.68E-03 |
| 101 | GO:0006949: syncytium formation | 6.32E-03 |
| 102 | GO:0006816: calcium ion transport | 6.98E-03 |
| 103 | GO:0009773: photosynthetic electron transport in photosystem I | 6.98E-03 |
| 104 | GO:0019684: photosynthesis, light reaction | 6.98E-03 |
| 105 | GO:0043085: positive regulation of catalytic activity | 6.98E-03 |
| 106 | GO:0006879: cellular iron ion homeostasis | 6.98E-03 |
| 107 | GO:0010216: maintenance of DNA methylation | 6.98E-03 |
| 108 | GO:0042254: ribosome biogenesis | 7.46E-03 |
| 109 | GO:0010207: photosystem II assembly | 9.13E-03 |
| 110 | GO:0010223: secondary shoot formation | 9.13E-03 |
| 111 | GO:0010039: response to iron ion | 9.90E-03 |
| 112 | GO:0090351: seedling development | 9.90E-03 |
| 113 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 1.00E-02 |
| 114 | GO:0009793: embryo development ending in seed dormancy | 1.10E-02 |
| 115 | GO:0019344: cysteine biosynthetic process | 1.15E-02 |
| 116 | GO:0009409: response to cold | 1.25E-02 |
| 117 | GO:0006730: one-carbon metabolic process | 1.40E-02 |
| 118 | GO:0007005: mitochondrion organization | 1.40E-02 |
| 119 | GO:0080092: regulation of pollen tube growth | 1.40E-02 |
| 120 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.49E-02 |
| 121 | GO:0010082: regulation of root meristem growth | 1.49E-02 |
| 122 | GO:0009294: DNA mediated transformation | 1.49E-02 |
| 123 | GO:0009411: response to UV | 1.49E-02 |
| 124 | GO:0001944: vasculature development | 1.49E-02 |
| 125 | GO:0006284: base-excision repair | 1.58E-02 |
| 126 | GO:0010089: xylem development | 1.58E-02 |
| 127 | GO:0046686: response to cadmium ion | 1.59E-02 |
| 128 | GO:0000226: microtubule cytoskeleton organization | 1.77E-02 |
| 129 | GO:0006662: glycerol ether metabolic process | 1.87E-02 |
| 130 | GO:0010197: polar nucleus fusion | 1.87E-02 |
| 131 | GO:0007018: microtubule-based movement | 1.97E-02 |
| 132 | GO:0006814: sodium ion transport | 1.97E-02 |
| 133 | GO:0019252: starch biosynthetic process | 2.07E-02 |
| 134 | GO:0055072: iron ion homeostasis | 2.07E-02 |
| 135 | GO:0006413: translational initiation | 2.12E-02 |
| 136 | GO:0000302: response to reactive oxygen species | 2.17E-02 |
| 137 | GO:0009828: plant-type cell wall loosening | 2.49E-02 |
| 138 | GO:0010286: heat acclimation | 2.60E-02 |
| 139 | GO:0007267: cell-cell signaling | 2.60E-02 |
| 140 | GO:0000910: cytokinesis | 2.71E-02 |
| 141 | GO:0010027: thylakoid membrane organization | 2.82E-02 |
| 142 | GO:0009627: systemic acquired resistance | 3.05E-02 |
| 143 | GO:0016311: dephosphorylation | 3.29E-02 |
| 144 | GO:0009817: defense response to fungus, incompatible interaction | 3.41E-02 |
| 145 | GO:0008219: cell death | 3.41E-02 |
| 146 | GO:0009910: negative regulation of flower development | 3.78E-02 |
| 147 | GO:0016051: carbohydrate biosynthetic process | 4.03E-02 |
| 148 | GO:0009637: response to blue light | 4.03E-02 |
| 149 | GO:0048366: leaf development | 4.14E-02 |
| 150 | GO:0034599: cellular response to oxidative stress | 4.16E-02 |
| 151 | GO:0042542: response to hydrogen peroxide | 4.69E-02 |
| 152 | GO:0008283: cell proliferation | 4.83E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004635: phosphoribosyl-AMP cyclohydrolase activity | 0.00E+00 |
| 2 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 3 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 4 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 5 | GO:0008962: phosphatidylglycerophosphatase activity | 0.00E+00 |
| 6 | GO:0004636: phosphoribosyl-ATP diphosphatase activity | 0.00E+00 |
| 7 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 8 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 9 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.44E-10 |
| 10 | GO:0051920: peroxiredoxin activity | 8.43E-09 |
| 11 | GO:0016209: antioxidant activity | 3.01E-08 |
| 12 | GO:0005528: FK506 binding | 1.49E-06 |
| 13 | GO:0004812: aminoacyl-tRNA ligase activity | 5.06E-06 |
| 14 | GO:0016149: translation release factor activity, codon specific | 1.90E-05 |
| 15 | GO:0019843: rRNA binding | 5.43E-05 |
| 16 | GO:0003735: structural constituent of ribosome | 5.86E-05 |
| 17 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 1.13E-04 |
| 18 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 2.20E-04 |
| 19 | GO:0004831: tyrosine-tRNA ligase activity | 2.20E-04 |
| 20 | GO:0004655: porphobilinogen synthase activity | 2.20E-04 |
| 21 | GO:0003984: acetolactate synthase activity | 2.20E-04 |
| 22 | GO:0004832: valine-tRNA ligase activity | 2.20E-04 |
| 23 | GO:0004830: tryptophan-tRNA ligase activity | 2.20E-04 |
| 24 | GO:0004820: glycine-tRNA ligase activity | 2.20E-04 |
| 25 | GO:0003747: translation release factor activity | 2.86E-04 |
| 26 | GO:0044183: protein binding involved in protein folding | 4.63E-04 |
| 27 | GO:0004817: cysteine-tRNA ligase activity | 4.90E-04 |
| 28 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 4.90E-04 |
| 29 | GO:0004047: aminomethyltransferase activity | 4.90E-04 |
| 30 | GO:0017150: tRNA dihydrouridine synthase activity | 7.98E-04 |
| 31 | GO:0002161: aminoacyl-tRNA editing activity | 7.98E-04 |
| 32 | GO:0004148: dihydrolipoyl dehydrogenase activity | 7.98E-04 |
| 33 | GO:0030267: glyoxylate reductase (NADP) activity | 7.98E-04 |
| 34 | GO:0005198: structural molecule activity | 1.07E-03 |
| 35 | GO:0004322: ferroxidase activity | 1.14E-03 |
| 36 | GO:0008276: protein methyltransferase activity | 1.14E-03 |
| 37 | GO:0008199: ferric iron binding | 1.14E-03 |
| 38 | GO:0004550: nucleoside diphosphate kinase activity | 1.14E-03 |
| 39 | GO:0008097: 5S rRNA binding | 1.14E-03 |
| 40 | GO:0008508: bile acid:sodium symporter activity | 1.14E-03 |
| 41 | GO:0004601: peroxidase activity | 1.43E-03 |
| 42 | GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed | 1.51E-03 |
| 43 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.51E-03 |
| 44 | GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity | 1.51E-03 |
| 45 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.51E-03 |
| 46 | GO:0008374: O-acyltransferase activity | 1.93E-03 |
| 47 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.93E-03 |
| 48 | GO:0008725: DNA-3-methyladenine glycosylase activity | 1.93E-03 |
| 49 | GO:0016462: pyrophosphatase activity | 2.38E-03 |
| 50 | GO:0008200: ion channel inhibitor activity | 2.38E-03 |
| 51 | GO:0080030: methyl indole-3-acetate esterase activity | 2.38E-03 |
| 52 | GO:0004747: ribokinase activity | 2.86E-03 |
| 53 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 2.86E-03 |
| 54 | GO:0003886: DNA (cytosine-5-)-methyltransferase activity | 2.86E-03 |
| 55 | GO:0008237: metallopeptidase activity | 2.87E-03 |
| 56 | GO:0016831: carboxy-lyase activity | 3.36E-03 |
| 57 | GO:0004427: inorganic diphosphatase activity | 3.36E-03 |
| 58 | GO:0004033: aldo-keto reductase (NADP) activity | 3.90E-03 |
| 59 | GO:0008865: fructokinase activity | 3.90E-03 |
| 60 | GO:0008236: serine-type peptidase activity | 3.98E-03 |
| 61 | GO:0004222: metalloendopeptidase activity | 4.61E-03 |
| 62 | GO:0004337: geranyltranstransferase activity | 5.06E-03 |
| 63 | GO:0003746: translation elongation factor activity | 5.30E-03 |
| 64 | GO:0005384: manganese ion transmembrane transporter activity | 5.68E-03 |
| 65 | GO:0005524: ATP binding | 6.15E-03 |
| 66 | GO:0008047: enzyme activator activity | 6.32E-03 |
| 67 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 6.98E-03 |
| 68 | GO:0004161: dimethylallyltranstransferase activity | 6.98E-03 |
| 69 | GO:0000049: tRNA binding | 7.68E-03 |
| 70 | GO:0015095: magnesium ion transmembrane transporter activity | 8.39E-03 |
| 71 | GO:0008324: cation transmembrane transporter activity | 1.23E-02 |
| 72 | GO:0004176: ATP-dependent peptidase activity | 1.32E-02 |
| 73 | GO:0051082: unfolded protein binding | 1.32E-02 |
| 74 | GO:0003924: GTPase activity | 1.57E-02 |
| 75 | GO:0047134: protein-disulfide reductase activity | 1.68E-02 |
| 76 | GO:0005199: structural constituent of cell wall | 1.87E-02 |
| 77 | GO:0004791: thioredoxin-disulfide reductase activity | 1.97E-02 |
| 78 | GO:0019901: protein kinase binding | 2.07E-02 |
| 79 | GO:0048038: quinone binding | 2.17E-02 |
| 80 | GO:0004518: nuclease activity | 2.28E-02 |
| 81 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.38E-02 |
| 82 | GO:0008017: microtubule binding | 2.39E-02 |
| 83 | GO:0008483: transaminase activity | 2.60E-02 |
| 84 | GO:0005200: structural constituent of cytoskeleton | 2.60E-02 |
| 85 | GO:0003743: translation initiation factor activity | 2.66E-02 |
| 86 | GO:0016597: amino acid binding | 2.71E-02 |
| 87 | GO:0042802: identical protein binding | 2.90E-02 |
| 88 | GO:0030145: manganese ion binding | 3.78E-02 |
| 89 | GO:0016740: transferase activity | 4.13E-02 |
| 90 | GO:0003993: acid phosphatase activity | 4.16E-02 |
| 91 | GO:0003729: mRNA binding | 4.40E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009344: nitrite reductase complex [NAD(P)H] | 0.00E+00 |
| 2 | GO:0005948: acetolactate synthase complex | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 3.47E-50 |
| 4 | GO:0009570: chloroplast stroma | 9.66E-42 |
| 5 | GO:0009941: chloroplast envelope | 1.69E-20 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 4.47E-18 |
| 7 | GO:0009579: thylakoid | 9.79E-17 |
| 8 | GO:0009535: chloroplast thylakoid membrane | 3.98E-15 |
| 9 | GO:0031977: thylakoid lumen | 3.61E-12 |
| 10 | GO:0009654: photosystem II oxygen evolving complex | 1.88E-06 |
| 11 | GO:0009534: chloroplast thylakoid | 3.70E-06 |
| 12 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 7.45E-06 |
| 13 | GO:0030095: chloroplast photosystem II | 3.31E-05 |
| 14 | GO:0019898: extrinsic component of membrane | 1.95E-04 |
| 15 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 2.20E-04 |
| 16 | GO:0010319: stromule | 3.03E-04 |
| 17 | GO:0005874: microtubule | 3.69E-04 |
| 18 | GO:0031969: chloroplast membrane | 3.94E-04 |
| 19 | GO:0000311: plastid large ribosomal subunit | 5.30E-04 |
| 20 | GO:0005840: ribosome | 6.57E-04 |
| 21 | GO:0072686: mitotic spindle | 1.93E-03 |
| 22 | GO:0009533: chloroplast stromal thylakoid | 3.36E-03 |
| 23 | GO:0048046: apoplast | 3.54E-03 |
| 24 | GO:0009539: photosystem II reaction center | 4.47E-03 |
| 25 | GO:0045298: tubulin complex | 5.06E-03 |
| 26 | GO:0000922: spindle pole | 5.06E-03 |
| 27 | GO:0005763: mitochondrial small ribosomal subunit | 5.06E-03 |
| 28 | GO:0055028: cortical microtubule | 6.32E-03 |
| 29 | GO:0016324: apical plasma membrane | 6.32E-03 |
| 30 | GO:0022626: cytosolic ribosome | 8.01E-03 |
| 31 | GO:0031012: extracellular matrix | 8.39E-03 |
| 32 | GO:0009574: preprophase band | 8.39E-03 |
| 33 | GO:0009536: plastid | 1.06E-02 |
| 34 | GO:0005875: microtubule associated complex | 1.07E-02 |
| 35 | GO:0042651: thylakoid membrane | 1.23E-02 |
| 36 | GO:0009532: plastid stroma | 1.32E-02 |
| 37 | GO:0005871: kinesin complex | 1.68E-02 |
| 38 | GO:0005759: mitochondrial matrix | 2.07E-02 |
| 39 | GO:0046658: anchored component of plasma membrane | 3.02E-02 |
| 40 | GO:0009505: plant-type cell wall | 3.44E-02 |
| 41 | GO:0005819: spindle | 4.30E-02 |
| 42 | GO:0022625: cytosolic large ribosomal subunit | 4.58E-02 |