co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G22340

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0008064: regulation of actin polymerization or depolymerization	0.00E+00
2	GO:0070125: mitochondrial translational elongation	0.00E+00
3	GO:0051493: regulation of cytoskeleton organization	0.00E+00
4	GO:0002184: cytoplasmic translational termination	0.00E+00
5	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
6	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
7	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
8	GO:0016553: base conversion or substitution editing	0.00E+00
9	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
10	GO:0042407: cristae formation	0.00E+00
11	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
12	GO:0006412: translation	8.82E-17
13	GO:0032544: plastid translation	2.52E-12
14	GO:0009658: chloroplast organization	1.23E-09
15	GO:0042254: ribosome biogenesis	2.50E-08
16	GO:0009735: response to cytokinin	2.08E-05
17	GO:0000413: protein peptidyl-prolyl isomerization	1.82E-04
18	GO:0006426: glycyl-tRNA aminoacylation	2.48E-04
19	GO:1904964: positive regulation of phytol biosynthetic process	2.48E-04
20	GO:0042371: vitamin K biosynthetic process	2.48E-04
21	GO:0006430: lysyl-tRNA aminoacylation	2.48E-04
22	GO:0060627: regulation of vesicle-mediated transport	2.48E-04
23	GO:0043489: RNA stabilization	2.48E-04
24	GO:1904966: positive regulation of vitamin E biosynthetic process	2.48E-04
25	GO:0010442: guard cell morphogenesis	2.48E-04
26	GO:0006779: porphyrin-containing compound biosynthetic process	4.05E-04
27	GO:0010027: thylakoid membrane organization	4.41E-04
28	GO:0006949: syncytium formation	4.74E-04
29	GO:0006782: protoporphyrinogen IX biosynthetic process	4.74E-04
30	GO:0015995: chlorophyll biosynthetic process	5.44E-04
31	GO:0018119: peptidyl-cysteine S-nitrosylation	5.47E-04
32	GO:0006423: cysteinyl-tRNA aminoacylation	5.49E-04
33	GO:0010424: DNA methylation on cytosine within a CG sequence	5.49E-04
34	GO:0052541: plant-type cell wall cellulose metabolic process	5.49E-04
35	GO:0006695: cholesterol biosynthetic process	5.49E-04
36	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.49E-04
37	GO:0010069: zygote asymmetric cytokinesis in embryo sac	5.49E-04
38	GO:0009793: embryo development ending in seed dormancy	6.07E-04
39	GO:0015979: photosynthesis	6.82E-04
40	GO:0045454: cell redox homeostasis	7.42E-04
41	GO:0009790: embryo development	7.48E-04
42	GO:0010020: chloroplast fission	7.98E-04
43	GO:0042742: defense response to bacterium	8.70E-04
44	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	8.92E-04
45	GO:0006418: tRNA aminoacylation for protein translation	1.20E-03
46	GO:0010088: phloem development	1.27E-03
47	GO:0043572: plastid fission	1.27E-03
48	GO:0051085: chaperone mediated protein folding requiring cofactor	1.27E-03
49	GO:0006241: CTP biosynthetic process	1.27E-03
50	GO:0019048: modulation by virus of host morphology or physiology	1.27E-03
51	GO:0006424: glutamyl-tRNA aminoacylation	1.27E-03
52	GO:0006165: nucleoside diphosphate phosphorylation	1.27E-03
53	GO:0006228: UTP biosynthetic process	1.27E-03
54	GO:0031048: chromatin silencing by small RNA	1.27E-03
55	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.57E-03
56	GO:0009409: response to cold	1.68E-03
57	GO:0006808: regulation of nitrogen utilization	1.70E-03
58	GO:0051322: anaphase	1.70E-03
59	GO:0009765: photosynthesis, light harvesting	1.70E-03
60	GO:0006183: GTP biosynthetic process	1.70E-03
61	GO:0000919: cell plate assembly	1.70E-03
62	GO:0051567: histone H3-K9 methylation	1.70E-03
63	GO:0042335: cuticle development	1.99E-03
64	GO:0045038: protein import into chloroplast thylakoid membrane	2.17E-03
65	GO:0016123: xanthophyll biosynthetic process	2.17E-03
66	GO:0048359: mucilage metabolic process involved in seed coat development	2.17E-03
67	GO:0032543: mitochondrial translation	2.17E-03
68	GO:0016120: carotene biosynthetic process	2.17E-03
69	GO:0016458: gene silencing	2.67E-03
70	GO:0006014: D-ribose metabolic process	2.67E-03
71	GO:0006354: DNA-templated transcription, elongation	2.67E-03
72	GO:0042549: photosystem II stabilization	2.67E-03
73	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.67E-03
74	GO:0006796: phosphate-containing compound metabolic process	2.67E-03
75	GO:0010190: cytochrome b6f complex assembly	2.67E-03
76	GO:0032973: amino acid export	2.67E-03
77	GO:0009828: plant-type cell wall loosening	3.20E-03
78	GO:1901259: chloroplast rRNA processing	3.21E-03
79	GO:0048444: floral organ morphogenesis	3.21E-03
80	GO:0010555: response to mannitol	3.21E-03
81	GO:0009955: adaxial/abaxial pattern specification	3.21E-03
82	GO:0042372: phylloquinone biosynthetic process	3.21E-03
83	GO:0010067: procambium histogenesis	3.21E-03
84	GO:0042026: protein refolding	3.21E-03
85	GO:0006694: steroid biosynthetic process	3.21E-03
86	GO:0045995: regulation of embryonic development	3.79E-03
87	GO:0048528: post-embryonic root development	3.79E-03
88	GO:0043090: amino acid import	3.79E-03
89	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.79E-03
90	GO:0071669: plant-type cell wall organization or biogenesis	3.79E-03
91	GO:0009627: systemic acquired resistance	4.26E-03
92	GO:0006353: DNA-templated transcription, termination	4.39E-03
93	GO:0000028: ribosomal small subunit assembly	4.39E-03
94	GO:0010928: regulation of auxin mediated signaling pathway	4.39E-03
95	GO:0030091: protein repair	4.39E-03
96	GO:0009642: response to light intensity	4.39E-03
97	GO:0042255: ribosome assembly	4.39E-03
98	GO:0006457: protein folding	4.60E-03
99	GO:0048481: plant ovule development	4.97E-03
100	GO:0009817: defense response to fungus, incompatible interaction	4.97E-03
101	GO:0006526: arginine biosynthetic process	5.03E-03
102	GO:0009808: lignin metabolic process	5.03E-03
103	GO:0009932: cell tip growth	5.03E-03
104	GO:0006783: heme biosynthetic process	5.70E-03
105	GO:0015780: nucleotide-sugar transport	5.70E-03
106	GO:0045337: farnesyl diphosphate biosynthetic process	5.70E-03
107	GO:0080144: amino acid homeostasis	5.70E-03
108	GO:0033384: geranyl diphosphate biosynthetic process	5.70E-03
109	GO:0043067: regulation of programmed cell death	6.40E-03
110	GO:0006349: regulation of gene expression by genetic imprinting	6.40E-03
111	GO:0030422: production of siRNA involved in RNA interference	7.12E-03
112	GO:0006415: translational termination	7.88E-03
113	GO:0010216: maintenance of DNA methylation	7.88E-03
114	GO:0009773: photosynthetic electron transport in photosystem I	7.88E-03
115	GO:0009073: aromatic amino acid family biosynthetic process	7.88E-03
116	GO:0043085: positive regulation of catalytic activity	7.88E-03
117	GO:0045037: protein import into chloroplast stroma	8.66E-03
118	GO:0009826: unidimensional cell growth	8.66E-03
119	GO:0009664: plant-type cell wall organization	1.02E-02
120	GO:0010223: secondary shoot formation	1.03E-02
121	GO:0009934: regulation of meristem structural organization	1.03E-02
122	GO:0010207: photosystem II assembly	1.03E-02
123	GO:0006813: potassium ion transport	1.10E-02
124	GO:0006071: glycerol metabolic process	1.21E-02
125	GO:0019344: cysteine biosynthetic process	1.30E-02
126	GO:0000027: ribosomal large subunit assembly	1.30E-02
127	GO:0051302: regulation of cell division	1.39E-02
128	GO:0010026: trichome differentiation	1.39E-02
129	GO:0007017: microtubule-based process	1.39E-02
130	GO:0061077: chaperone-mediated protein folding	1.49E-02
131	GO:0006306: DNA methylation	1.49E-02
132	GO:0007005: mitochondrion organization	1.59E-02
133	GO:0009411: response to UV	1.69E-02
134	GO:0001944: vasculature development	1.69E-02
135	GO:0006869: lipid transport	1.69E-02
136	GO:0009294: DNA mediated transformation	1.69E-02
137	GO:0010089: xylem development	1.79E-02
138	GO:0019722: calcium-mediated signaling	1.79E-02
139	GO:0016117: carotenoid biosynthetic process	1.90E-02
140	GO:0006810: transport	1.94E-02
141	GO:0000271: polysaccharide biosynthetic process	2.01E-02
142	GO:0008033: tRNA processing	2.01E-02
143	GO:0000226: microtubule cytoskeleton organization	2.01E-02
144	GO:0006662: glycerol ether metabolic process	2.12E-02
145	GO:0010197: polar nucleus fusion	2.12E-02
146	GO:0006342: chromatin silencing	2.12E-02
147	GO:0008360: regulation of cell shape	2.12E-02
148	GO:0009958: positive gravitropism	2.12E-02
149	GO:0006520: cellular amino acid metabolic process	2.12E-02
150	GO:0046686: response to cadmium ion	2.15E-02
151	GO:0007018: microtubule-based movement	2.23E-02
152	GO:0019252: starch biosynthetic process	2.34E-02
153	GO:0016132: brassinosteroid biosynthetic process	2.46E-02
154	GO:0006633: fatty acid biosynthetic process	2.47E-02
155	GO:0006413: translational initiation	2.53E-02
156	GO:0032502: developmental process	2.58E-02
157	GO:0007264: small GTPase mediated signal transduction	2.58E-02
158	GO:0010583: response to cyclopentenone	2.58E-02
159	GO:0055114: oxidation-reduction process	2.82E-02
160	GO:0007267: cell-cell signaling	2.94E-02
161	GO:0071805: potassium ion transmembrane transport	2.94E-02
162	GO:0051607: defense response to virus	3.07E-02
163	GO:0000910: cytokinesis	3.07E-02
164	GO:0009816: defense response to bacterium, incompatible interaction	3.32E-02
165	GO:0018298: protein-chromophore linkage	3.86E-02
166	GO:0008219: cell death	3.86E-02
167	GO:0030244: cellulose biosynthetic process	3.86E-02
168	GO:0009416: response to light stimulus	4.00E-02
169	GO:0009813: flavonoid biosynthetic process	4.00E-02
170	GO:0009832: plant-type cell wall biogenesis	4.00E-02
171	GO:0009834: plant-type secondary cell wall biogenesis	4.14E-02
172	GO:0006811: ion transport	4.14E-02
173	GO:0009910: negative regulation of flower development	4.28E-02
174	GO:0009631: cold acclimation	4.28E-02
175	GO:0045087: innate immune response	4.56E-02
176	GO:0016051: carbohydrate biosynthetic process	4.56E-02
177	GO:0034599: cellular response to oxidative stress	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
2	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
3	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
4	GO:0005048: signal sequence binding	0.00E+00
5	GO:0050614: delta24-sterol reductase activity	0.00E+00
6	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
7	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
8	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
9	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
10	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
11	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
12	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
13	GO:0019843: rRNA binding	3.33E-26
14	GO:0003735: structural constituent of ribosome	4.06E-17
15	GO:0051920: peroxiredoxin activity	1.25E-08
16	GO:0016209: antioxidant activity	4.47E-08
17	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.49E-05
18	GO:0004820: glycine-tRNA ligase activity	2.48E-04
19	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	2.48E-04
20	GO:0004824: lysine-tRNA ligase activity	2.48E-04
21	GO:0004655: porphobilinogen synthase activity	2.48E-04
22	GO:0004817: cysteine-tRNA ligase activity	5.49E-04
23	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	5.49E-04
24	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	5.49E-04
25	GO:0008266: poly(U) RNA binding	7.98E-04
26	GO:0030267: glyoxylate reductase (NADP) activity	8.92E-04
27	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	8.92E-04
28	GO:0017150: tRNA dihydrouridine synthase activity	8.92E-04
29	GO:0005504: fatty acid binding	8.92E-04
30	GO:0002161: aminoacyl-tRNA editing activity	8.92E-04
31	GO:0004148: dihydrolipoyl dehydrogenase activity	8.92E-04
32	GO:0003924: GTPase activity	1.07E-03
33	GO:0035197: siRNA binding	1.27E-03
34	GO:0004550: nucleoside diphosphate kinase activity	1.27E-03
35	GO:0043023: ribosomal large subunit binding	1.27E-03
36	GO:0008097: 5S rRNA binding	1.27E-03
37	GO:0016149: translation release factor activity, codon specific	1.27E-03
38	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.70E-03
39	GO:0004045: aminoacyl-tRNA hydrolase activity	1.70E-03
40	GO:0045430: chalcone isomerase activity	1.70E-03
41	GO:0046527: glucosyltransferase activity	1.70E-03
42	GO:0043495: protein anchor	1.70E-03
43	GO:0004812: aminoacyl-tRNA ligase activity	1.84E-03
44	GO:0004601: peroxidase activity	1.86E-03
45	GO:0004040: amidase activity	2.17E-03
46	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.17E-03
47	GO:0008200: ion channel inhibitor activity	2.67E-03
48	GO:0016208: AMP binding	2.67E-03
49	GO:0016462: pyrophosphatase activity	2.67E-03
50	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	3.21E-03
51	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.21E-03
52	GO:0051753: mannan synthase activity	3.21E-03
53	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.21E-03
54	GO:0004747: ribokinase activity	3.21E-03
55	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	3.21E-03
56	GO:0008237: metallopeptidase activity	3.40E-03
57	GO:0016831: carboxy-lyase activity	3.79E-03
58	GO:0004427: inorganic diphosphatase activity	3.79E-03
59	GO:0019899: enzyme binding	3.79E-03
60	GO:0004033: aldo-keto reductase (NADP) activity	4.39E-03
61	GO:0008865: fructokinase activity	4.39E-03
62	GO:0008312: 7S RNA binding	4.39E-03
63	GO:0052747: sinapyl alcohol dehydrogenase activity	4.39E-03
64	GO:0004222: metalloendopeptidase activity	5.48E-03
65	GO:0008017: microtubule binding	5.52E-03
66	GO:0003747: translation release factor activity	5.70E-03
67	GO:0004337: geranyltranstransferase activity	5.70E-03
68	GO:0008889: glycerophosphodiester phosphodiesterase activity	5.70E-03
69	GO:0003746: translation elongation factor activity	6.30E-03
70	GO:0005525: GTP binding	6.98E-03
71	GO:0008047: enzyme activator activity	7.12E-03
72	GO:0008289: lipid binding	7.71E-03
73	GO:0044183: protein binding involved in protein folding	7.88E-03
74	GO:0004161: dimethylallyltranstransferase activity	7.88E-03
75	GO:0005089: Rho guanyl-nucleotide exchange factor activity	7.88E-03
76	GO:0045551: cinnamyl-alcohol dehydrogenase activity	8.66E-03
77	GO:0004521: endoribonuclease activity	8.66E-03
78	GO:0000049: tRNA binding	8.66E-03
79	GO:0000287: magnesium ion binding	8.87E-03
80	GO:0031072: heat shock protein binding	9.47E-03
81	GO:0003777: microtubule motor activity	1.22E-02
82	GO:0005528: FK506 binding	1.30E-02
83	GO:0015079: potassium ion transmembrane transporter activity	1.39E-02
84	GO:0008324: cation transmembrane transporter activity	1.39E-02
85	GO:0004176: ATP-dependent peptidase activity	1.49E-02
86	GO:0051082: unfolded protein binding	1.57E-02
87	GO:0016760: cellulose synthase (UDP-forming) activity	1.69E-02
88	GO:0022891: substrate-specific transmembrane transporter activity	1.69E-02
89	GO:0030570: pectate lyase activity	1.69E-02
90	GO:0003727: single-stranded RNA binding	1.79E-02
91	GO:0008514: organic anion transmembrane transporter activity	1.79E-02
92	GO:0047134: protein-disulfide reductase activity	1.90E-02
93	GO:0005507: copper ion binding	1.90E-02
94	GO:0003729: mRNA binding	1.99E-02
95	GO:0005199: structural constituent of cell wall	2.12E-02
96	GO:0008080: N-acetyltransferase activity	2.12E-02
97	GO:0004791: thioredoxin-disulfide reductase activity	2.23E-02
98	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.70E-02
99	GO:0005200: structural constituent of cytoskeleton	2.94E-02
100	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.94E-02
101	GO:0003743: translation initiation factor activity	3.17E-02
102	GO:0016168: chlorophyll binding	3.32E-02
103	GO:0016887: ATPase activity	3.39E-02
104	GO:0042802: identical protein binding	3.44E-02
105	GO:0005524: ATP binding	3.82E-02
106	GO:0030145: manganese ion binding	4.28E-02
107	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.28E-02
108	GO:0003682: chromatin binding	4.42E-02
109	GO:0050660: flavin adenine dinucleotide binding	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0009547: plastid ribosome	0.00E+00
2	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
3	GO:0070971: endoplasmic reticulum exit site	0.00E+00
4	GO:0009570: chloroplast stroma	5.23E-55
5	GO:0009507: chloroplast	2.02E-47
6	GO:0009941: chloroplast envelope	1.98E-32
7	GO:0009579: thylakoid	2.24E-17
8	GO:0005840: ribosome	3.89E-15
9	GO:0009535: chloroplast thylakoid membrane	2.90E-11
10	GO:0031977: thylakoid lumen	3.31E-10
11	GO:0009543: chloroplast thylakoid lumen	7.41E-10
12	GO:0009505: plant-type cell wall	3.04E-06
13	GO:0009534: chloroplast thylakoid	7.37E-06
14	GO:0009536: plastid	1.83E-05
15	GO:0000311: plastid large ribosomal subunit	2.88E-05
16	GO:0046658: anchored component of plasma membrane	3.55E-05
17	GO:0009654: photosystem II oxygen evolving complex	8.50E-05
18	GO:0042651: thylakoid membrane	8.50E-05
19	GO:0016020: membrane	2.36E-04
20	GO:0019898: extrinsic component of membrane	2.47E-04
21	GO:0000428: DNA-directed RNA polymerase complex	2.48E-04
22	GO:0010319: stromule	3.80E-04
23	GO:0031225: anchored component of membrane	4.87E-04
24	GO:0005874: microtubule	5.07E-04
25	GO:0031969: chloroplast membrane	5.39E-04
26	GO:0080085: signal recognition particle, chloroplast targeting	5.49E-04
27	GO:0022626: cytosolic ribosome	6.81E-04
28	GO:0048046: apoplast	6.97E-04
29	GO:0015934: large ribosomal subunit	7.44E-04
30	GO:0000312: plastid small ribosomal subunit	7.98E-04
31	GO:0030095: chloroplast photosystem II	7.98E-04
32	GO:0005875: microtubule associated complex	9.89E-04
33	GO:0005719: nuclear euchromatin	1.27E-03
34	GO:0072686: mitotic spindle	2.17E-03
35	GO:0005618: cell wall	2.44E-03
36	GO:0009706: chloroplast inner membrane	2.60E-03
37	GO:0000793: condensed chromosome	2.67E-03
38	GO:0000794: condensed nuclear chromosome	3.79E-03
39	GO:0009533: chloroplast stromal thylakoid	3.79E-03
40	GO:0030529: intracellular ribonucleoprotein complex	3.81E-03
41	GO:0009539: photosystem II reaction center	5.03E-03
42	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	5.03E-03
43	GO:0045298: tubulin complex	5.70E-03
44	GO:0005763: mitochondrial small ribosomal subunit	5.70E-03
45	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.70E-03
46	GO:0000922: spindle pole	5.70E-03
47	GO:0015030: Cajal body	6.40E-03
48	GO:0005819: spindle	6.88E-03
49	GO:0055028: cortical microtubule	7.12E-03
50	GO:0031012: extracellular matrix	9.47E-03
51	GO:0009574: preprophase band	9.47E-03
52	GO:0022625: cytosolic large ribosomal subunit	1.27E-02
53	GO:0015935: small ribosomal subunit	1.49E-02
54	GO:0009532: plastid stroma	1.49E-02
55	GO:0005871: kinesin complex	1.90E-02
56	GO:0009523: photosystem II	2.34E-02
57	GO:0005778: peroxisomal membrane	2.94E-02
58	GO:0009295: nucleoid	2.94E-02
59	GO:0022627: cytosolic small ribosomal subunit	3.59E-02