Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G18570

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0016553: base conversion or substitution editing0.00E+00
2GO:0042820: vitamin B6 catabolic process0.00E+00
3GO:0006399: tRNA metabolic process0.00E+00
4GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
5GO:0070125: mitochondrial translational elongation0.00E+00
6GO:0002184: cytoplasmic translational termination0.00E+00
7GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
8GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
9GO:0042407: cristae formation0.00E+00
10GO:0042821: pyridoxal biosynthetic process0.00E+00
11GO:0006412: translation1.56E-12
12GO:0032544: plastid translation5.46E-08
13GO:0015995: chlorophyll biosynthetic process1.50E-06
14GO:0009658: chloroplast organization3.26E-06
15GO:0042254: ribosome biogenesis3.47E-06
16GO:0015979: photosynthesis1.01E-05
17GO:0006949: syncytium formation1.40E-05
18GO:0009828: plant-type cell wall loosening1.79E-05
19GO:0009735: response to cytokinin9.05E-05
20GO:0045454: cell redox homeostasis9.94E-05
21GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.04E-04
22GO:1901259: chloroplast rRNA processing1.17E-04
23GO:0009664: plant-type cell wall organization1.64E-04
24GO:0006353: DNA-templated transcription, termination1.97E-04
25GO:0043489: RNA stabilization2.25E-04
26GO:1904966: positive regulation of vitamin E biosynthetic process2.25E-04
27GO:1904964: positive regulation of phytol biosynthetic process2.25E-04
28GO:0042371: vitamin K biosynthetic process2.25E-04
29GO:0009443: pyridoxal 5'-phosphate salvage2.25E-04
30GO:0009826: unidimensional cell growth2.59E-04
31GO:0006782: protoporphyrinogen IX biosynthetic process4.12E-04
32GO:0055114: oxidation-reduction process4.49E-04
33GO:0043085: positive regulation of catalytic activity4.76E-04
34GO:0006423: cysteinyl-tRNA aminoacylation5.00E-04
35GO:0044208: 'de novo' AMP biosynthetic process5.00E-04
36GO:0006729: tetrahydrobiopterin biosynthetic process5.00E-04
37GO:0010424: DNA methylation on cytosine within a CG sequence5.00E-04
38GO:0043039: tRNA aminoacylation5.00E-04
39GO:1902326: positive regulation of chlorophyll biosynthetic process5.00E-04
40GO:0010069: zygote asymmetric cytokinesis in embryo sac5.00E-04
41GO:0009817: defense response to fungus, incompatible interaction5.19E-04
42GO:0015675: nickel cation transport8.13E-04
43GO:0010581: regulation of starch biosynthetic process8.13E-04
44GO:0071492: cellular response to UV-A8.13E-04
45GO:0006418: tRNA aminoacylation for protein translation1.05E-03
46GO:0006165: nucleoside diphosphate phosphorylation1.16E-03
47GO:0006228: UTP biosynthetic process1.16E-03
48GO:0031048: chromatin silencing by small RNA1.16E-03
49GO:0006424: glutamyl-tRNA aminoacylation1.16E-03
50GO:0016556: mRNA modification1.16E-03
51GO:0043572: plastid fission1.16E-03
52GO:0006986: response to unfolded protein1.16E-03
53GO:2001141: regulation of RNA biosynthetic process1.16E-03
54GO:0051085: chaperone mediated protein folding requiring cofactor1.16E-03
55GO:0010239: chloroplast mRNA processing1.16E-03
56GO:0006241: CTP biosynthetic process1.16E-03
57GO:0019048: modulation by virus of host morphology or physiology1.16E-03
58GO:0033014: tetrapyrrole biosynthetic process1.16E-03
59GO:0051567: histone H3-K9 methylation1.54E-03
60GO:0006021: inositol biosynthetic process1.54E-03
61GO:0010037: response to carbon dioxide1.54E-03
62GO:0015976: carbon utilization1.54E-03
63GO:0071486: cellular response to high light intensity1.54E-03
64GO:0009765: photosynthesis, light harvesting1.54E-03
65GO:0006183: GTP biosynthetic process1.54E-03
66GO:2000122: negative regulation of stomatal complex development1.54E-03
67GO:0016117: carotenoid biosynthetic process1.60E-03
68GO:0048359: mucilage metabolic process involved in seed coat development1.97E-03
69GO:0016120: carotene biosynthetic process1.97E-03
70GO:0032543: mitochondrial translation1.97E-03
71GO:0006564: L-serine biosynthetic process1.97E-03
72GO:0010236: plastoquinone biosynthetic process1.97E-03
73GO:0016123: xanthophyll biosynthetic process1.97E-03
74GO:0042742: defense response to bacterium2.25E-03
75GO:0010190: cytochrome b6f complex assembly2.43E-03
76GO:0016458: gene silencing2.43E-03
77GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.43E-03
78GO:0006694: steroid biosynthetic process2.91E-03
79GO:0010189: vitamin E biosynthetic process2.91E-03
80GO:0048444: floral organ morphogenesis2.91E-03
81GO:0009955: adaxial/abaxial pattern specification2.91E-03
82GO:0006400: tRNA modification3.43E-03
83GO:0009395: phospholipid catabolic process3.43E-03
84GO:0009793: embryo development ending in seed dormancy3.95E-03
85GO:0030091: protein repair3.98E-03
86GO:0042255: ribosome assembly3.98E-03
87GO:0000105: histidine biosynthetic process3.98E-03
88GO:0048564: photosystem I assembly3.98E-03
89GO:0045292: mRNA cis splicing, via spliceosome3.98E-03
90GO:0009409: response to cold4.10E-03
91GO:0018298: protein-chromophore linkage4.31E-03
92GO:0009451: RNA modification4.47E-03
93GO:0006526: arginine biosynthetic process4.56E-03
94GO:0009808: lignin metabolic process4.56E-03
95GO:0071482: cellular response to light stimulus4.56E-03
96GO:0019430: removal of superoxide radicals4.56E-03
97GO:0006783: heme biosynthetic process5.16E-03
98GO:0000373: Group II intron splicing5.16E-03
99GO:0006189: 'de novo' IMP biosynthetic process5.16E-03
100GO:0015780: nucleotide-sugar transport5.16E-03
101GO:0009637: response to blue light5.46E-03
102GO:0010380: regulation of chlorophyll biosynthetic process5.79E-03
103GO:0043067: regulation of programmed cell death5.79E-03
104GO:0006779: porphyrin-containing compound biosynthetic process5.79E-03
105GO:0006349: regulation of gene expression by genetic imprinting5.79E-03
106GO:0030422: production of siRNA involved in RNA interference6.45E-03
107GO:0045036: protein targeting to chloroplast6.45E-03
108GO:0010114: response to red light7.04E-03
109GO:0009073: aromatic amino acid family biosynthetic process7.13E-03
110GO:0006415: translational termination7.13E-03
111GO:0006352: DNA-templated transcription, initiation7.13E-03
112GO:0018119: peptidyl-cysteine S-nitrosylation7.13E-03
113GO:0010216: maintenance of DNA methylation7.13E-03
114GO:0008643: carbohydrate transport7.61E-03
115GO:0006790: sulfur compound metabolic process7.84E-03
116GO:0010020: chloroplast fission9.33E-03
117GO:0009934: regulation of meristem structural organization9.33E-03
118GO:0046854: phosphatidylinositol phosphorylation1.01E-02
119GO:0000027: ribosomal large subunit assembly1.17E-02
120GO:0009768: photosynthesis, light harvesting in photosystem I1.26E-02
121GO:0051302: regulation of cell division1.26E-02
122GO:0019953: sexual reproduction1.26E-02
123GO:0055085: transmembrane transport1.29E-02
124GO:0006457: protein folding1.32E-02
125GO:0006306: DNA methylation1.34E-02
126GO:0009294: DNA mediated transformation1.53E-02
127GO:0009411: response to UV1.53E-02
128GO:0019722: calcium-mediated signaling1.62E-02
129GO:0042335: cuticle development1.81E-02
130GO:0008033: tRNA processing1.81E-02
131GO:0006520: cellular amino acid metabolic process1.91E-02
132GO:0006662: glycerol ether metabolic process1.91E-02
133GO:0010197: polar nucleus fusion1.91E-02
134GO:0006342: chromatin silencing1.91E-02
135GO:0042744: hydrogen peroxide catabolic process1.94E-02
136GO:0006814: sodium ion transport2.01E-02
137GO:0006633: fatty acid biosynthetic process2.14E-02
138GO:0016132: brassinosteroid biosynthetic process2.22E-02
139GO:0016032: viral process2.32E-02
140GO:0032502: developmental process2.32E-02
141GO:0010583: response to cyclopentenone2.32E-02
142GO:0007267: cell-cell signaling2.65E-02
143GO:0051607: defense response to virus2.77E-02
144GO:0010027: thylakoid membrane organization2.88E-02
145GO:0009816: defense response to bacterium, incompatible interaction3.00E-02
146GO:0016311: dephosphorylation3.36E-02
147GO:0048481: plant ovule development3.48E-02
148GO:0009813: flavonoid biosynthetic process3.61E-02
149GO:0010218: response to far red light3.73E-02
150GO:0009834: plant-type secondary cell wall biogenesis3.73E-02
151GO:0009631: cold acclimation3.86E-02
152GO:0009910: negative regulation of flower development3.86E-02
153GO:0010119: regulation of stomatal movement3.86E-02
154GO:0045087: innate immune response4.12E-02
155GO:0034599: cellular response to oxidative stress4.25E-02
156GO:0006839: mitochondrial transport4.52E-02
157GO:0006631: fatty acid metabolic process4.66E-02
158GO:0042542: response to hydrogen peroxide4.79E-02
159GO:0046686: response to cadmium ion4.90E-02
160GO:0051707: response to other organism4.93E-02
RankGO TermAdjusted P value
1GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
2GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
3GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
4GO:0045435: lycopene epsilon cyclase activity0.00E+00
5GO:0004822: isoleucine-tRNA ligase activity0.00E+00
6GO:0004401: histidinol-phosphatase activity0.00E+00
7GO:0046408: chlorophyll synthetase activity0.00E+00
8GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
9GO:0052834: inositol monophosphate phosphatase activity0.00E+00
10GO:0050614: delta24-sterol reductase activity0.00E+00
11GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
12GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
13GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
14GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
15GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
16GO:0019843: rRNA binding2.08E-21
17GO:0003735: structural constituent of ribosome2.87E-13
18GO:0051920: peroxiredoxin activity9.02E-09
19GO:0016209: antioxidant activity3.22E-08
20GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity2.37E-06
21GO:0004601: peroxidase activity3.68E-05
22GO:0004033: aldo-keto reductase (NADP) activity1.97E-04
23GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.25E-04
24GO:0004018: N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity2.25E-04
25GO:0010347: L-galactose-1-phosphate phosphatase activity2.25E-04
26GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity2.25E-04
27GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity2.25E-04
28GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity2.25E-04
29GO:0070626: (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity2.25E-04
30GO:0004560: alpha-L-fucosidase activity2.25E-04
31GO:0004831: tyrosine-tRNA ligase activity2.25E-04
32GO:0004655: porphobilinogen synthase activity2.25E-04
33GO:0008237: metallopeptidase activity3.15E-04
34GO:0016168: chlorophyll binding3.95E-04
35GO:0008047: enzyme activator activity4.12E-04
36GO:0052833: inositol monophosphate 4-phosphatase activity5.00E-04
37GO:0016630: protochlorophyllide reductase activity5.00E-04
38GO:0015099: nickel cation transmembrane transporter activity5.00E-04
39GO:0004617: phosphoglycerate dehydrogenase activity5.00E-04
40GO:0052832: inositol monophosphate 3-phosphatase activity5.00E-04
41GO:0004817: cysteine-tRNA ligase activity5.00E-04
42GO:0004109: coproporphyrinogen oxidase activity5.00E-04
43GO:0008934: inositol monophosphate 1-phosphatase activity5.00E-04
44GO:0008266: poly(U) RNA binding6.96E-04
45GO:0003746: translation elongation factor activity6.99E-04
46GO:0005504: fatty acid binding8.13E-04
47GO:0004148: dihydrolipoyl dehydrogenase activity8.13E-04
48GO:0070402: NADPH binding8.13E-04
49GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor8.13E-04
50GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity8.13E-04
51GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity8.13E-04
52GO:0002161: aminoacyl-tRNA editing activity8.13E-04
53GO:0005507: copper ion binding1.12E-03
54GO:0004176: ATP-dependent peptidase activity1.15E-03
55GO:0016149: translation release factor activity, codon specific1.16E-03
56GO:0035197: siRNA binding1.16E-03
57GO:0004550: nucleoside diphosphate kinase activity1.16E-03
58GO:0043023: ribosomal large subunit binding1.16E-03
59GO:0008508: bile acid:sodium symporter activity1.16E-03
60GO:0022891: substrate-specific transmembrane transporter activity1.36E-03
61GO:0045430: chalcone isomerase activity1.54E-03
62GO:0043495: protein anchor1.54E-03
63GO:0001053: plastid sigma factor activity1.54E-03
64GO:0016836: hydro-lyase activity1.54E-03
65GO:0016987: sigma factor activity1.54E-03
66GO:0004812: aminoacyl-tRNA ligase activity1.60E-03
67GO:0003959: NADPH dehydrogenase activity1.97E-03
68GO:0016773: phosphotransferase activity, alcohol group as acceptor1.97E-03
69GO:0004040: amidase activity1.97E-03
70GO:0004791: thioredoxin-disulfide reductase activity2.00E-03
71GO:0051082: unfolded protein binding2.17E-03
72GO:0008200: ion channel inhibitor activity2.43E-03
73GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.61E-03
74GO:0003886: DNA (cytosine-5-)-methyltransferase activity2.91E-03
75GO:0033743: peptide-methionine (R)-S-oxide reductase activity2.91E-03
76GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.91E-03
77GO:0019899: enzyme binding3.43E-03
78GO:0016831: carboxy-lyase activity3.43E-03
79GO:0003723: RNA binding3.82E-03
80GO:0052747: sinapyl alcohol dehydrogenase activity3.98E-03
81GO:0004222: metalloendopeptidase activity4.75E-03
82GO:0003747: translation release factor activity5.16E-03
83GO:0003993: acid phosphatase activity5.71E-03
84GO:0047617: acyl-CoA hydrolase activity5.79E-03
85GO:0016788: hydrolase activity, acting on ester bonds7.75E-03
86GO:0000049: tRNA binding7.84E-03
87GO:0045551: cinnamyl-alcohol dehydrogenase activity7.84E-03
88GO:0004521: endoribonuclease activity7.84E-03
89GO:0003755: peptidyl-prolyl cis-trans isomerase activity8.22E-03
90GO:0051287: NAD binding8.53E-03
91GO:0004089: carbonate dehydratase activity8.57E-03
92GO:0031072: heat shock protein binding8.57E-03
93GO:0004565: beta-galactosidase activity8.57E-03
94GO:0031409: pigment binding1.09E-02
95GO:0051087: chaperone binding1.26E-02
96GO:0003729: mRNA binding1.55E-02
97GO:0003727: single-stranded RNA binding1.62E-02
98GO:0008514: organic anion transmembrane transporter activity1.62E-02
99GO:0047134: protein-disulfide reductase activity1.71E-02
100GO:0009055: electron carrier activity1.79E-02
101GO:0004519: endonuclease activity1.82E-02
102GO:0005199: structural constituent of cell wall1.91E-02
103GO:0008080: N-acetyltransferase activity1.91E-02
104GO:0016597: amino acid binding2.77E-02
105GO:0016887: ATPase activity2.83E-02
106GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.36E-02
107GO:0008168: methyltransferase activity3.50E-02
108GO:0003682: chromatin binding3.84E-02
109GO:0030145: manganese ion binding3.86E-02
110GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.86E-02
111GO:0051539: 4 iron, 4 sulfur cluster binding4.52E-02
112GO:0004185: serine-type carboxypeptidase activity4.93E-02
113GO:0052689: carboxylic ester hydrolase activity4.95E-02
RankGO TermAdjusted P value
1GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
2GO:0009507: chloroplast1.90E-50
3GO:0009570: chloroplast stroma9.15E-43
4GO:0009941: chloroplast envelope2.08E-32
5GO:0005840: ribosome3.64E-12
6GO:0009579: thylakoid2.10E-10
7GO:0000311: plastid large ribosomal subunit4.01E-07
8GO:0009535: chloroplast thylakoid membrane5.23E-07
9GO:0009505: plant-type cell wall1.10E-05
10GO:0046658: anchored component of plasma membrane2.42E-05
11GO:0009534: chloroplast thylakoid3.24E-05
12GO:0048046: apoplast3.40E-05
13GO:0009547: plastid ribosome2.25E-04
14GO:0009536: plastid2.72E-04
15GO:0010319: stromule3.15E-04
16GO:0031969: chloroplast membrane4.16E-04
17GO:0005853: eukaryotic translation elongation factor 1 complex8.13E-04
18GO:0042651: thylakoid membrane1.05E-03
19GO:0015935: small ribosomal subunit1.15E-03
20GO:0005719: nuclear euchromatin1.16E-03
21GO:0016020: membrane2.12E-03
22GO:0009523: photosystem II2.15E-03
23GO:0009706: chloroplast inner membrane2.17E-03
24GO:0030529: intracellular ribonucleoprotein complex3.31E-03
25GO:0009533: chloroplast stromal thylakoid3.43E-03
26GO:0009539: photosystem II reaction center4.56E-03
27GO:0031225: anchored component of membrane4.95E-03
28GO:0015934: large ribosomal subunit4.98E-03
29GO:0005763: mitochondrial small ribosomal subunit5.16E-03
30GO:0015030: Cajal body5.79E-03
31GO:0022626: cytosolic ribosome8.38E-03
32GO:0000312: plastid small ribosomal subunit9.33E-03
33GO:0030076: light-harvesting complex1.01E-02
34GO:0022625: cytosolic large ribosomal subunit1.06E-02
35GO:0005875: microtubule associated complex1.09E-02
36GO:0009654: photosystem II oxygen evolving complex1.26E-02
37GO:0009532: plastid stroma1.34E-02
38GO:0010287: plastoglobule1.61E-02
39GO:0009543: chloroplast thylakoid lumen1.70E-02
40GO:0009522: photosystem I2.01E-02
41GO:0005759: mitochondrial matrix2.14E-02
42GO:0005618: cell wall3.22E-02
Gene type



Gene DE type