co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G16400

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1902171: regulation of tocopherol cyclase activity	0.00E+00
2	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
3	GO:0033231: carbohydrate export	0.00E+00
4	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
5	GO:0046677: response to antibiotic	0.00E+00
6	GO:0032928: regulation of superoxide anion generation	0.00E+00
7	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
8	GO:0015979: photosynthesis	3.94E-08
9	GO:0015995: chlorophyll biosynthetic process	1.90E-07
10	GO:0009768: photosynthesis, light harvesting in photosystem I	3.58E-07
11	GO:0015755: fructose transport	1.30E-04
12	GO:0006824: cobalt ion transport	1.30E-04
13	GO:0000476: maturation of 4.5S rRNA	1.30E-04
14	GO:0000967: rRNA 5'-end processing	1.30E-04
15	GO:0033206: meiotic cytokinesis	1.30E-04
16	GO:0043007: maintenance of rDNA	1.30E-04
17	GO:1902334: fructose export from vacuole to cytoplasm	1.30E-04
18	GO:0018298: protein-chromophore linkage	1.86E-04
19	GO:0010218: response to far red light	2.14E-04
20	GO:0034755: iron ion transmembrane transport	2.99E-04
21	GO:0035304: regulation of protein dephosphorylation	2.99E-04
22	GO:0050992: dimethylallyl diphosphate biosynthetic process	2.99E-04
23	GO:0016122: xanthophyll metabolic process	2.99E-04
24	GO:0034470: ncRNA processing	2.99E-04
25	GO:0009640: photomorphogenesis	3.62E-04
26	GO:0010114: response to red light	3.62E-04
27	GO:0051260: protein homooligomerization	5.50E-04
28	GO:0051639: actin filament network formation	7.04E-04
29	GO:0070417: cellular response to cold	7.67E-04
30	GO:0009741: response to brassinosteroid	8.87E-04
31	GO:0030007: cellular potassium ion homeostasis	9.34E-04
32	GO:0042938: dipeptide transport	9.34E-04
33	GO:0051764: actin crosslink formation	9.34E-04
34	GO:0009765: photosynthesis, light harvesting	9.34E-04
35	GO:0010117: photoprotection	1.18E-03
36	GO:0042176: regulation of protein catabolic process	1.45E-03
37	GO:0006655: phosphatidylglycerol biosynthetic process	1.45E-03
38	GO:0042549: photosystem II stabilization	1.45E-03
39	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.45E-03
40	GO:0010029: regulation of seed germination	1.63E-03
41	GO:2000033: regulation of seed dormancy process	1.73E-03
42	GO:0009942: longitudinal axis specification	1.73E-03
43	GO:0010189: vitamin E biosynthetic process	1.73E-03
44	GO:0071470: cellular response to osmotic stress	1.73E-03
45	GO:0080186: developmental vegetative growth	2.04E-03
46	GO:0010196: nonphotochemical quenching	2.04E-03
47	GO:0009769: photosynthesis, light harvesting in photosystem II	2.04E-03
48	GO:0050829: defense response to Gram-negative bacterium	2.04E-03
49	GO:0009645: response to low light intensity stimulus	2.04E-03
50	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	2.36E-03
51	GO:0050821: protein stabilization	2.36E-03
52	GO:0009637: response to blue light	2.54E-03
53	GO:0009657: plastid organization	2.69E-03
54	GO:0007389: pattern specification process	2.69E-03
55	GO:0048507: meristem development	3.04E-03
56	GO:0010206: photosystem II repair	3.04E-03
57	GO:0034765: regulation of ion transmembrane transport	3.04E-03
58	GO:0006779: porphyrin-containing compound biosynthetic process	3.41E-03
59	GO:1900865: chloroplast RNA modification	3.41E-03
60	GO:0010205: photoinhibition	3.41E-03
61	GO:0006782: protoporphyrinogen IX biosynthetic process	3.79E-03
62	GO:0006995: cellular response to nitrogen starvation	3.79E-03
63	GO:0009688: abscisic acid biosynthetic process	3.79E-03
64	GO:0006949: syncytium formation	3.79E-03
65	GO:0009698: phenylpropanoid metabolic process	4.18E-03
66	GO:0019684: photosynthesis, light reaction	4.18E-03
67	GO:0009750: response to fructose	4.18E-03
68	GO:0030148: sphingolipid biosynthetic process	4.18E-03
69	GO:0016024: CDP-diacylglycerol biosynthetic process	4.58E-03
70	GO:0015706: nitrate transport	4.58E-03
71	GO:0016925: protein sumoylation	4.58E-03
72	GO:0018107: peptidyl-threonine phosphorylation	5.00E-03
73	GO:0006094: gluconeogenesis	5.00E-03
74	GO:0009767: photosynthetic electron transport chain	5.00E-03
75	GO:0043086: negative regulation of catalytic activity	5.17E-03
76	GO:0010207: photosystem II assembly	5.44E-03
77	GO:0009740: gibberellic acid mediated signaling pathway	5.86E-03
78	GO:0006629: lipid metabolic process	6.08E-03
79	GO:0034976: response to endoplasmic reticulum stress	6.34E-03
80	GO:0007275: multicellular organism development	6.48E-03
81	GO:0009863: salicylic acid mediated signaling pathway	6.81E-03
82	GO:0010187: negative regulation of seed germination	6.81E-03
83	GO:0051017: actin filament bundle assembly	6.81E-03
84	GO:0006289: nucleotide-excision repair	6.81E-03
85	GO:2000377: regulation of reactive oxygen species metabolic process	6.81E-03
86	GO:0007017: microtubule-based process	7.30E-03
87	GO:0055114: oxidation-reduction process	7.75E-03
88	GO:0009269: response to desiccation	7.79E-03
89	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	8.82E-03
90	GO:0010089: xylem development	9.35E-03
91	GO:0040008: regulation of growth	1.03E-02
92	GO:0007623: circadian rhythm	1.08E-02
93	GO:0010305: leaf vascular tissue pattern formation	1.10E-02
94	GO:0007018: microtubule-based movement	1.16E-02
95	GO:0009646: response to absence of light	1.16E-02
96	GO:0008654: phospholipid biosynthetic process	1.22E-02
97	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.28E-02
98	GO:0010193: response to ozone	1.28E-02
99	GO:0010583: response to cyclopentenone	1.34E-02
100	GO:0016032: viral process	1.34E-02
101	GO:0010252: auxin homeostasis	1.46E-02
102	GO:0009828: plant-type cell wall loosening	1.46E-02
103	GO:0071805: potassium ion transmembrane transport	1.53E-02
104	GO:0009826: unidimensional cell growth	1.61E-02
105	GO:0016311: dephosphorylation	1.93E-02
106	GO:0009723: response to ethylene	1.93E-02
107	GO:0010119: regulation of stomatal movement	2.22E-02
108	GO:0007568: aging	2.22E-02
109	GO:0009910: negative regulation of flower development	2.22E-02
110	GO:0009867: jasmonic acid mediated signaling pathway	2.37E-02
111	GO:0034599: cellular response to oxidative stress	2.45E-02
112	GO:0045454: cell redox homeostasis	2.48E-02
113	GO:0009737: response to abscisic acid	2.49E-02
114	GO:0006631: fatty acid metabolic process	2.68E-02
115	GO:0009926: auxin polar transport	2.84E-02
116	GO:0009644: response to high light intensity	3.00E-02
117	GO:0048364: root development	3.19E-02
118	GO:0006812: cation transport	3.34E-02
119	GO:0009664: plant-type cell wall organization	3.34E-02
120	GO:0042538: hyperosmotic salinity response	3.34E-02
121	GO:0006364: rRNA processing	3.51E-02
122	GO:0010224: response to UV-B	3.60E-02
123	GO:0006857: oligopeptide transport	3.68E-02
124	GO:0006417: regulation of translation	3.77E-02
125	GO:0009909: regulation of flower development	3.77E-02
126	GO:0006096: glycolytic process	3.95E-02
127	GO:0006508: proteolysis	4.24E-02
128	GO:0009734: auxin-activated signaling pathway	4.30E-02
129	GO:0042545: cell wall modification	4.41E-02
130	GO:0018105: peptidyl-serine phosphorylation	4.60E-02
131	GO:0006396: RNA processing	4.60E-02
132	GO:0009742: brassinosteroid mediated signaling pathway	4.70E-02
133	GO:0009735: response to cytokinin	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
2	GO:0015269: calcium-activated potassium channel activity	0.00E+00
3	GO:0045550: geranylgeranyl reductase activity	0.00E+00
4	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
5	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
6	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
7	GO:0015284: fructose uniporter activity	0.00E+00
8	GO:0031409: pigment binding	1.45E-05
9	GO:0004462: lactoylglutathione lyase activity	3.44E-05
10	GO:0010242: oxygen evolving activity	1.30E-04
11	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.30E-04
12	GO:0052631: sphingolipid delta-8 desaturase activity	1.30E-04
13	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	1.30E-04
14	GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	1.30E-04
15	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.30E-04
16	GO:0016168: chlorophyll binding	1.38E-04
17	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	2.99E-04
18	GO:0019172: glyoxalase III activity	2.99E-04
19	GO:0005353: fructose transmembrane transporter activity	2.99E-04
20	GO:0016868: intramolecular transferase activity, phosphotransferases	2.99E-04
21	GO:0010277: chlorophyllide a oxygenase [overall] activity	4.92E-04
22	GO:0016805: dipeptidase activity	4.92E-04
23	GO:0004180: carboxypeptidase activity	4.92E-04
24	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	7.04E-04
25	GO:0019789: SUMO transferase activity	7.04E-04
26	GO:0070628: proteasome binding	9.34E-04
27	GO:0042936: dipeptide transporter activity	9.34E-04
28	GO:0016846: carbon-sulfur lyase activity	1.18E-03
29	GO:0051538: 3 iron, 4 sulfur cluster binding	1.18E-03
30	GO:0031593: polyubiquitin binding	1.45E-03
31	GO:0015271: outward rectifier potassium channel activity	1.45E-03
32	GO:0004605: phosphatidate cytidylyltransferase activity	1.45E-03
33	GO:0004332: fructose-bisphosphate aldolase activity	1.45E-03
34	GO:0046910: pectinesterase inhibitor activity	1.49E-03
35	GO:0004602: glutathione peroxidase activity	1.73E-03
36	GO:0005267: potassium channel activity	2.69E-03
37	GO:0000989: transcription factor activity, transcription factor binding	3.04E-03
38	GO:0005381: iron ion transmembrane transporter activity	3.41E-03
39	GO:0009672: auxin:proton symporter activity	3.41E-03
40	GO:0051537: 2 iron, 2 sulfur cluster binding	3.52E-03
41	GO:0010329: auxin efflux transmembrane transporter activity	5.00E-03
42	GO:0008081: phosphoric diester hydrolase activity	5.00E-03
43	GO:0004022: alcohol dehydrogenase (NAD) activity	5.00E-03
44	GO:0008266: poly(U) RNA binding	5.44E-03
45	GO:0016874: ligase activity	5.86E-03
46	GO:0051119: sugar transmembrane transporter activity	5.88E-03
47	GO:0004190: aspartic-type endopeptidase activity	5.88E-03
48	GO:0043130: ubiquitin binding	6.81E-03
49	GO:0005216: ion channel activity	7.30E-03
50	GO:0008289: lipid binding	9.24E-03
51	GO:0005215: transporter activity	9.32E-03
52	GO:0003756: protein disulfide isomerase activity	9.35E-03
53	GO:0003727: single-stranded RNA binding	9.35E-03
54	GO:0008536: Ran GTPase binding	1.10E-02
55	GO:0046872: metal ion binding	1.27E-02
56	GO:0048038: quinone binding	1.28E-02
57	GO:0051015: actin filament binding	1.40E-02
58	GO:0003684: damaged DNA binding	1.46E-02
59	GO:0005200: structural constituent of cytoskeleton	1.53E-02
60	GO:0005515: protein binding	2.24E-02
61	GO:0003993: acid phosphatase activity	2.45E-02
62	GO:0004185: serine-type carboxypeptidase activity	2.84E-02
63	GO:0043621: protein self-association	3.00E-02
64	GO:0003924: GTPase activity	3.06E-02
65	GO:0016298: lipase activity	3.60E-02
66	GO:0003777: microtubule motor activity	3.77E-02
67	GO:0045330: aspartyl esterase activity	3.77E-02
68	GO:0030599: pectinesterase activity	4.32E-02
69	GO:0003779: actin binding	4.41E-02
70	GO:0015035: protein disulfide oxidoreductase activity	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0009534: chloroplast thylakoid	3.89E-18
3	GO:0009535: chloroplast thylakoid membrane	3.49E-17
4	GO:0009507: chloroplast	1.90E-13
5	GO:0010287: plastoglobule	8.48E-12
6	GO:0009941: chloroplast envelope	5.39E-10
7	GO:0009579: thylakoid	5.88E-10
8	GO:0009538: photosystem I reaction center	9.81E-07
9	GO:0009522: photosystem I	1.67E-06
10	GO:0009543: chloroplast thylakoid lumen	9.37E-06
11	GO:0009570: chloroplast stroma	1.32E-05
12	GO:0009517: PSII associated light-harvesting complex II	1.40E-05
13	GO:0009783: photosystem II antenna complex	1.30E-04
14	GO:0016021: integral component of membrane	2.09E-04
15	GO:0031977: thylakoid lumen	3.25E-04
16	GO:0030095: chloroplast photosystem II	3.27E-04
17	GO:0030076: light-harvesting complex	3.67E-04
18	GO:0031969: chloroplast membrane	6.43E-04
19	GO:0032432: actin filament bundle	7.04E-04
20	GO:0030660: Golgi-associated vesicle membrane	9.34E-04
21	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	9.34E-04
22	GO:0009523: photosystem II	1.02E-03
23	GO:0055035: plastid thylakoid membrane	1.18E-03
24	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	2.36E-03
25	GO:0045298: tubulin complex	3.04E-03
26	GO:0016020: membrane	3.91E-03
27	GO:0005765: lysosomal membrane	4.18E-03
28	GO:0005884: actin filament	4.18E-03
29	GO:0009706: chloroplast inner membrane	6.22E-03
30	GO:0009654: photosystem II oxygen evolving complex	7.30E-03
31	GO:0042651: thylakoid membrane	7.30E-03
32	GO:0005871: kinesin complex	9.90E-03
33	GO:0019898: extrinsic component of membrane	1.22E-02
34	GO:0071944: cell periphery	1.40E-02
35	GO:0005874: microtubule	2.00E-02
36	GO:0010008: endosome membrane	4.04E-02