co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G13510

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0007638: mechanosensory behavior	0.00E+00
2	GO:1905499: trichome papilla formation	0.00E+00
3	GO:0015813: L-glutamate transport	0.00E+00
4	GO:0002184: cytoplasmic translational termination	0.00E+00
5	GO:0033494: ferulate metabolic process	0.00E+00
6	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
7	GO:0042407: cristae formation	0.00E+00
8	GO:0006412: translation	1.00E-10
9	GO:0032544: plastid translation	6.25E-10
10	GO:0009658: chloroplast organization	4.96E-07
11	GO:0042254: ribosome biogenesis	6.93E-06
12	GO:0015979: photosynthesis	1.96E-05
13	GO:0007231: osmosensory signaling pathway	2.55E-05
14	GO:0009773: photosynthetic electron transport in photosystem I	2.55E-05
15	GO:0015976: carbon utilization	4.61E-05
16	GO:0033500: carbohydrate homeostasis	4.61E-05
17	GO:0042742: defense response to bacterium	6.16E-05
18	GO:0009817: defense response to fungus, incompatible interaction	6.49E-05
19	GO:0009735: response to cytokinin	1.59E-04
20	GO:0000413: protein peptidyl-prolyl isomerization	2.00E-04
21	GO:0010442: guard cell morphogenesis	2.60E-04
22	GO:0071277: cellular response to calcium ion	2.60E-04
23	GO:0071588: hydrogen peroxide mediated signaling pathway	2.60E-04
24	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.60E-04
25	GO:0060627: regulation of vesicle-mediated transport	2.60E-04
26	GO:0010027: thylakoid membrane organization	4.82E-04
27	GO:0006423: cysteinyl-tRNA aminoacylation	5.74E-04
28	GO:0006729: tetrahydrobiopterin biosynthetic process	5.74E-04
29	GO:0030388: fructose 1,6-bisphosphate metabolic process	5.74E-04
30	GO:2000123: positive regulation of stomatal complex development	5.74E-04
31	GO:0052541: plant-type cell wall cellulose metabolic process	5.74E-04
32	GO:0010086: embryonic root morphogenesis	5.74E-04
33	GO:0006415: translational termination	5.84E-04
34	GO:0045454: cell redox homeostasis	8.37E-04
35	GO:0010207: photosystem II assembly	8.52E-04
36	GO:0019253: reductive pentose-phosphate cycle	8.52E-04
37	GO:0071492: cellular response to UV-A	9.31E-04
38	GO:0006696: ergosterol biosynthetic process	9.31E-04
39	GO:0090506: axillary shoot meristem initiation	9.31E-04
40	GO:0006000: fructose metabolic process	9.31E-04
41	GO:0055114: oxidation-reduction process	1.11E-03
42	GO:0071329: cellular response to sucrose stimulus	1.33E-03
43	GO:0043572: plastid fission	1.33E-03
44	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.33E-03
45	GO:0015729: oxaloacetate transport	1.33E-03
46	GO:0061077: chaperone-mediated protein folding	1.41E-03
47	GO:2000038: regulation of stomatal complex development	1.78E-03
48	GO:0006546: glycine catabolic process	1.78E-03
49	GO:0010037: response to carbon dioxide	1.78E-03
50	GO:0009956: radial pattern formation	1.78E-03
51	GO:0019676: ammonia assimilation cycle	1.78E-03
52	GO:0015743: malate transport	1.78E-03
53	GO:0071486: cellular response to high light intensity	1.78E-03
54	GO:0019464: glycine decarboxylation via glycine cleavage system	1.78E-03
55	GO:0009765: photosynthesis, light harvesting	1.78E-03
56	GO:2000122: negative regulation of stomatal complex development	1.78E-03
57	GO:0009409: response to cold	1.96E-03
58	GO:0016117: carotenoid biosynthetic process	1.97E-03
59	GO:0042335: cuticle development	2.13E-03
60	GO:0048359: mucilage metabolic process involved in seed coat development	2.27E-03
61	GO:0071423: malate transmembrane transport	2.27E-03
62	GO:0016120: carotene biosynthetic process	2.27E-03
63	GO:0006564: L-serine biosynthetic process	2.27E-03
64	GO:0010236: plastoquinone biosynthetic process	2.27E-03
65	GO:0016123: xanthophyll biosynthetic process	2.27E-03
66	GO:0006665: sphingolipid metabolic process	2.27E-03
67	GO:0010375: stomatal complex patterning	2.27E-03
68	GO:0048831: regulation of shoot system development	2.80E-03
69	GO:0010190: cytochrome b6f complex assembly	2.80E-03
70	GO:0042549: photosystem II stabilization	2.80E-03
71	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.80E-03
72	GO:1901259: chloroplast rRNA processing	3.36E-03
73	GO:0048509: regulation of meristem development	3.36E-03
74	GO:0010189: vitamin E biosynthetic process	3.36E-03
75	GO:0010019: chloroplast-nucleus signaling pathway	3.36E-03
76	GO:0048444: floral organ morphogenesis	3.36E-03
77	GO:0010555: response to mannitol	3.36E-03
78	GO:0009955: adaxial/abaxial pattern specification	3.36E-03
79	GO:0010067: procambium histogenesis	3.36E-03
80	GO:0007267: cell-cell signaling	3.64E-03
81	GO:0008272: sulfate transport	3.97E-03
82	GO:0006869: lipid transport	4.33E-03
83	GO:0009790: embryo development	4.59E-03
84	GO:0042255: ribosome assembly	4.60E-03
85	GO:0009704: de-etiolation	4.60E-03
86	GO:0030091: protein repair	4.60E-03
87	GO:0009642: response to light intensity	4.60E-03
88	GO:0009657: plastid organization	5.27E-03
89	GO:0006526: arginine biosynthetic process	5.27E-03
90	GO:0006002: fructose 6-phosphate metabolic process	5.27E-03
91	GO:0045490: pectin catabolic process	5.68E-03
92	GO:0010206: photosystem II repair	5.98E-03
93	GO:0090333: regulation of stomatal closure	5.98E-03
94	GO:0048589: developmental growth	5.98E-03
95	GO:0015780: nucleotide-sugar transport	5.98E-03
96	GO:0043067: regulation of programmed cell death	6.71E-03
97	GO:0042761: very long-chain fatty acid biosynthetic process	6.71E-03
98	GO:0034599: cellular response to oxidative stress	7.05E-03
99	GO:0006810: transport	7.30E-03
100	GO:0006949: syncytium formation	7.47E-03
101	GO:0043085: positive regulation of catalytic activity	8.27E-03
102	GO:0018119: peptidyl-cysteine S-nitrosylation	8.27E-03
103	GO:0010015: root morphogenesis	8.27E-03
104	GO:0006816: calcium ion transport	8.27E-03
105	GO:0006820: anion transport	9.09E-03
106	GO:0006006: glucose metabolic process	9.94E-03
107	GO:0006094: gluconeogenesis	9.94E-03
108	GO:0005986: sucrose biosynthetic process	9.94E-03
109	GO:0010020: chloroplast fission	1.08E-02
110	GO:0009933: meristem structural organization	1.08E-02
111	GO:0010223: secondary shoot formation	1.08E-02
112	GO:0009934: regulation of meristem structural organization	1.08E-02
113	GO:0010143: cutin biosynthetic process	1.08E-02
114	GO:0071555: cell wall organization	1.13E-02
115	GO:0005985: sucrose metabolic process	1.17E-02
116	GO:0070588: calcium ion transmembrane transport	1.17E-02
117	GO:0010025: wax biosynthetic process	1.27E-02
118	GO:0006636: unsaturated fatty acid biosynthetic process	1.27E-02
119	GO:0006071: glycerol metabolic process	1.27E-02
120	GO:0007010: cytoskeleton organization	1.36E-02
121	GO:0019344: cysteine biosynthetic process	1.36E-02
122	GO:0009116: nucleoside metabolic process	1.36E-02
123	GO:0000027: ribosomal large subunit assembly	1.36E-02
124	GO:0009768: photosynthesis, light harvesting in photosystem I	1.46E-02
125	GO:0051302: regulation of cell division	1.46E-02
126	GO:0006418: tRNA aminoacylation for protein translation	1.46E-02
127	GO:0010026: trichome differentiation	1.46E-02
128	GO:0080092: regulation of pollen tube growth	1.67E-02
129	GO:0009793: embryo development ending in seed dormancy	1.75E-02
130	GO:0009294: DNA mediated transformation	1.77E-02
131	GO:0001944: vasculature development	1.77E-02
132	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.77E-02
133	GO:0006457: protein folding	1.82E-02
134	GO:0019722: calcium-mediated signaling	1.88E-02
135	GO:0010089: xylem development	1.88E-02
136	GO:0010091: trichome branching	1.88E-02
137	GO:0010087: phloem or xylem histogenesis	2.11E-02
138	GO:0006520: cellular amino acid metabolic process	2.22E-02
139	GO:0010305: leaf vascular tissue pattern formation	2.22E-02
140	GO:0006662: glycerol ether metabolic process	2.22E-02
141	GO:0010197: polar nucleus fusion	2.22E-02
142	GO:0006814: sodium ion transport	2.34E-02
143	GO:0042744: hydrogen peroxide catabolic process	2.40E-02
144	GO:0002229: defense response to oomycetes	2.58E-02
145	GO:0000302: response to reactive oxygen species	2.58E-02
146	GO:0006633: fatty acid biosynthetic process	2.64E-02
147	GO:0032502: developmental process	2.70E-02
148	GO:0007264: small GTPase mediated signal transduction	2.70E-02
149	GO:0006413: translational initiation	2.71E-02
150	GO:1901657: glycosyl compound metabolic process	2.83E-02
151	GO:0009828: plant-type cell wall loosening	2.96E-02
152	GO:0010029: regulation of seed germination	3.49E-02
153	GO:0010411: xyloglucan metabolic process	3.77E-02
154	GO:0015995: chlorophyll biosynthetic process	3.77E-02
155	GO:0018298: protein-chromophore linkage	4.05E-02
156	GO:0048481: plant ovule development	4.05E-02
157	GO:0048767: root hair elongation	4.20E-02
158	GO:0000160: phosphorelay signal transduction system	4.20E-02
159	GO:0010218: response to far red light	4.34E-02
160	GO:0009834: plant-type secondary cell wall biogenesis	4.34E-02
161	GO:0009407: toxin catabolic process	4.34E-02
162	GO:0009631: cold acclimation	4.49E-02
163	GO:0007568: aging	4.49E-02
164	GO:0010119: regulation of stomatal movement	4.49E-02
165	GO:0009637: response to blue light	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
2	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
3	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
4	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
5	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
6	GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity	0.00E+00
7	GO:0046905: phytoene synthase activity	0.00E+00
8	GO:0009885: transmembrane histidine kinase cytokinin receptor activity	0.00E+00
9	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
10	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
11	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
12	GO:0019955: cytokine binding	0.00E+00
13	GO:0019843: rRNA binding	2.45E-17
14	GO:0003735: structural constituent of ribosome	1.98E-11
15	GO:0051920: peroxiredoxin activity	1.46E-08
16	GO:0016209: antioxidant activity	5.22E-08
17	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	9.19E-07
18	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.13E-05
19	GO:0016149: translation release factor activity, codon specific	2.55E-05
20	GO:0051996: squalene synthase activity	2.60E-04
21	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	2.60E-04
22	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.60E-04
23	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	2.60E-04
24	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	2.60E-04
25	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.60E-04
26	GO:0003747: translation release factor activity	3.65E-04
27	GO:0004601: peroxidase activity	4.13E-04
28	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	5.74E-04
29	GO:0015367: oxoglutarate:malate antiporter activity	5.74E-04
30	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	5.74E-04
31	GO:0009884: cytokinin receptor activity	5.74E-04
32	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	5.74E-04
33	GO:0008967: phosphoglycolate phosphatase activity	5.74E-04
34	GO:0042389: omega-3 fatty acid desaturase activity	5.74E-04
35	GO:0004617: phosphoglycerate dehydrogenase activity	5.74E-04
36	GO:0004817: cysteine-tRNA ligase activity	5.74E-04
37	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	5.74E-04
38	GO:0004089: carbonate dehydratase activity	7.57E-04
39	GO:0030267: glyoxylate reductase (NADP) activity	9.31E-04
40	GO:0005034: osmosensor activity	9.31E-04
41	GO:0050734: hydroxycinnamoyltransferase activity	9.31E-04
42	GO:0002161: aminoacyl-tRNA editing activity	9.31E-04
43	GO:0005528: FK506 binding	1.17E-03
44	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.33E-03
45	GO:0043023: ribosomal large subunit binding	1.33E-03
46	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.33E-03
47	GO:0015131: oxaloacetate transmembrane transporter activity	1.33E-03
48	GO:0051287: NAD binding	1.58E-03
49	GO:0030570: pectate lyase activity	1.68E-03
50	GO:0004659: prenyltransferase activity	1.78E-03
51	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.78E-03
52	GO:0005313: L-glutamate transmembrane transporter activity	1.78E-03
53	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.27E-03
54	GO:0004040: amidase activity	2.27E-03
55	GO:0008381: mechanically-gated ion channel activity	2.27E-03
56	GO:0009922: fatty acid elongase activity	2.27E-03
57	GO:0019901: protein kinase binding	2.64E-03
58	GO:0016688: L-ascorbate peroxidase activity	2.80E-03
59	GO:0008200: ion channel inhibitor activity	2.80E-03
60	GO:0004130: cytochrome-c peroxidase activity	2.80E-03
61	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.36E-03
62	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.36E-03
63	GO:0051753: mannan synthase activity	3.36E-03
64	GO:0016759: cellulose synthase activity	3.42E-03
65	GO:0019899: enzyme binding	3.97E-03
66	GO:0015140: malate transmembrane transporter activity	3.97E-03
67	GO:0016168: chlorophyll binding	4.32E-03
68	GO:0052747: sinapyl alcohol dehydrogenase activity	4.60E-03
69	GO:0004033: aldo-keto reductase (NADP) activity	4.60E-03
70	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.27E-03
71	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	5.98E-03
72	GO:0008889: glycerophosphodiester phosphodiesterase activity	5.98E-03
73	GO:0004673: protein histidine kinase activity	7.47E-03
74	GO:0008047: enzyme activator activity	7.47E-03
75	GO:0005089: Rho guanyl-nucleotide exchange factor activity	8.27E-03
76	GO:0008289: lipid binding	8.55E-03
77	GO:0000049: tRNA binding	9.09E-03
78	GO:0045551: cinnamyl-alcohol dehydrogenase activity	9.09E-03
79	GO:0031072: heat shock protein binding	9.94E-03
80	GO:0000155: phosphorelay sensor kinase activity	9.94E-03
81	GO:0005262: calcium channel activity	9.94E-03
82	GO:0004565: beta-galactosidase activity	9.94E-03
83	GO:0008266: poly(U) RNA binding	1.08E-02
84	GO:0003690: double-stranded DNA binding	1.22E-02
85	GO:0031409: pigment binding	1.27E-02
86	GO:0004857: enzyme inhibitor activity	1.36E-02
87	GO:0008324: cation transmembrane transporter activity	1.46E-02
88	GO:0043424: protein histidine kinase binding	1.46E-02
89	GO:0004176: ATP-dependent peptidase activity	1.56E-02
90	GO:0033612: receptor serine/threonine kinase binding	1.56E-02
91	GO:0030599: pectinesterase activity	1.58E-02
92	GO:0022891: substrate-specific transmembrane transporter activity	1.77E-02
93	GO:0003727: single-stranded RNA binding	1.88E-02
94	GO:0008514: organic anion transmembrane transporter activity	1.88E-02
95	GO:0047134: protein-disulfide reductase activity	1.99E-02
96	GO:0004812: aminoacyl-tRNA ligase activity	1.99E-02
97	GO:0005102: receptor binding	1.99E-02
98	GO:0003924: GTPase activity	2.13E-02
99	GO:0005199: structural constituent of cell wall	2.22E-02
100	GO:0004791: thioredoxin-disulfide reductase activity	2.34E-02
101	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.58E-02
102	GO:0048038: quinone binding	2.58E-02
103	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.83E-02
104	GO:0008237: metallopeptidase activity	3.09E-02
105	GO:0005200: structural constituent of cytoskeleton	3.09E-02
106	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.09E-02
107	GO:0016597: amino acid binding	3.22E-02
108	GO:0003743: translation initiation factor activity	3.39E-02
109	GO:0004721: phosphoprotein phosphatase activity	3.77E-02
110	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.77E-02
111	GO:0102483: scopolin beta-glucosidase activity	3.77E-02
112	GO:0008236: serine-type peptidase activity	3.91E-02
113	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.91E-02
114	GO:0004222: metalloendopeptidase activity	4.34E-02
115	GO:0030145: manganese ion binding	4.49E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.68E-43
2	GO:0009570: chloroplast stroma	1.40E-31
3	GO:0009941: chloroplast envelope	6.00E-27
4	GO:0009535: chloroplast thylakoid membrane	1.13E-19
5	GO:0009579: thylakoid	2.06E-18
6	GO:0048046: apoplast	4.30E-14
7	GO:0005840: ribosome	1.80E-11
8	GO:0009534: chloroplast thylakoid	6.14E-11
9	GO:0009543: chloroplast thylakoid lumen	1.01E-09
10	GO:0031977: thylakoid lumen	1.51E-08
11	GO:0009706: chloroplast inner membrane	4.19E-06
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.12E-05
13	GO:0031225: anchored component of membrane	2.49E-05
14	GO:0010319: stromule	3.08E-05
15	GO:0000311: plastid large ribosomal subunit	3.21E-05
16	GO:0046658: anchored component of plasma membrane	4.25E-05
17	GO:0005618: cell wall	1.17E-04
18	GO:0009536: plastid	1.20E-04
19	GO:0009923: fatty acid elongase complex	2.60E-04
20	GO:0009547: plastid ribosome	2.60E-04
21	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.60E-04
22	GO:0009505: plant-type cell wall	4.97E-04
23	GO:0042170: plastid membrane	5.74E-04
24	GO:0009654: photosystem II oxygen evolving complex	1.28E-03
25	GO:0005960: glycine cleavage complex	1.33E-03
26	GO:0016020: membrane	1.40E-03
27	GO:0010287: plastoglobule	3.52E-03
28	GO:0009533: chloroplast stromal thylakoid	3.97E-03
29	GO:0009539: photosystem II reaction center	5.27E-03
30	GO:0005763: mitochondrial small ribosomal subunit	5.98E-03
31	GO:0016324: apical plasma membrane	7.47E-03
32	GO:0031012: extracellular matrix	9.94E-03
33	GO:0000312: plastid small ribosomal subunit	1.08E-02
34	GO:0030095: chloroplast photosystem II	1.08E-02
35	GO:0022626: cytosolic ribosome	1.16E-02
36	GO:0030076: light-harvesting complex	1.17E-02
37	GO:0005875: microtubule associated complex	1.27E-02
38	GO:0022625: cytosolic large ribosomal subunit	1.39E-02
39	GO:0009522: photosystem I	2.34E-02
40	GO:0009523: photosystem II	2.46E-02
41	GO:0019898: extrinsic component of membrane	2.46E-02
42	GO:0015934: large ribosomal subunit	4.49E-02