co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G13460

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033494: ferulate metabolic process	0.00E+00
2	GO:0006066: alcohol metabolic process	0.00E+00
3	GO:0045176: apical protein localization	0.00E+00
4	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
5	GO:0007638: mechanosensory behavior	0.00E+00
6	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
7	GO:0043972: histone H3-K23 acetylation	0.00E+00
8	GO:0006399: tRNA metabolic process	0.00E+00
9	GO:0044154: histone H3-K14 acetylation	0.00E+00
10	GO:0042335: cuticle development	1.03E-05
11	GO:0015979: photosynthesis	2.04E-05
12	GO:0009773: photosynthetic electron transport in photosystem I	2.60E-05
13	GO:0043971: histone H3-K18 acetylation	2.63E-04
14	GO:0042371: vitamin K biosynthetic process	2.63E-04
15	GO:0071588: hydrogen peroxide mediated signaling pathway	2.63E-04
16	GO:0071555: cell wall organization	2.89E-04
17	GO:0009658: chloroplast organization	4.23E-04
18	GO:0006650: glycerophospholipid metabolic process	5.78E-04
19	GO:1900033: negative regulation of trichome patterning	5.78E-04
20	GO:0097054: L-glutamate biosynthetic process	5.78E-04
21	GO:0010270: photosystem II oxygen evolving complex assembly	5.78E-04
22	GO:0006415: translational termination	5.92E-04
23	GO:0000038: very long-chain fatty acid metabolic process	5.92E-04
24	GO:0006816: calcium ion transport	5.92E-04
25	GO:0006810: transport	7.56E-04
26	GO:0010020: chloroplast fission	8.62E-04
27	GO:0006557: S-adenosylmethioninamine biosynthetic process	9.39E-04
28	GO:0090506: axillary shoot meristem initiation	9.39E-04
29	GO:0006869: lipid transport	1.00E-03
30	GO:0016042: lipid catabolic process	1.17E-03
31	GO:0009768: photosynthesis, light harvesting in photosystem I	1.30E-03
32	GO:0006537: glutamate biosynthetic process	1.34E-03
33	GO:0010088: phloem development	1.34E-03
34	GO:0009855: determination of bilateral symmetry	1.34E-03
35	GO:0006168: adenine salvage	1.34E-03
36	GO:0043572: plastid fission	1.34E-03
37	GO:2001141: regulation of RNA biosynthetic process	1.34E-03
38	GO:0006166: purine ribonucleoside salvage	1.34E-03
39	GO:0007231: osmosensory signaling pathway	1.34E-03
40	GO:0009152: purine ribonucleotide biosynthetic process	1.34E-03
41	GO:0046653: tetrahydrofolate metabolic process	1.34E-03
42	GO:2000122: negative regulation of stomatal complex development	1.79E-03
43	GO:0033500: carbohydrate homeostasis	1.79E-03
44	GO:0042991: transcription factor import into nucleus	1.79E-03
45	GO:0010037: response to carbon dioxide	1.79E-03
46	GO:0048629: trichome patterning	1.79E-03
47	GO:0019676: ammonia assimilation cycle	1.79E-03
48	GO:0015976: carbon utilization	1.79E-03
49	GO:0009765: photosynthesis, light harvesting	1.79E-03
50	GO:0015994: chlorophyll metabolic process	1.79E-03
51	GO:0016117: carotenoid biosynthetic process	2.00E-03
52	GO:0046785: microtubule polymerization	2.29E-03
53	GO:0016120: carotene biosynthetic process	2.29E-03
54	GO:0006656: phosphatidylcholine biosynthetic process	2.29E-03
55	GO:0006564: L-serine biosynthetic process	2.29E-03
56	GO:0031365: N-terminal protein amino acid modification	2.29E-03
57	GO:0016123: xanthophyll biosynthetic process	2.29E-03
58	GO:0044209: AMP salvage	2.29E-03
59	GO:0048825: cotyledon development	2.68E-03
60	GO:0016554: cytidine to uridine editing	2.82E-03
61	GO:0009913: epidermal cell differentiation	2.82E-03
62	GO:0006828: manganese ion transport	2.82E-03
63	GO:0032973: amino acid export	2.82E-03
64	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.82E-03
65	GO:0035435: phosphate ion transmembrane transport	2.82E-03
66	GO:0006014: D-ribose metabolic process	2.82E-03
67	GO:0010405: arabinogalactan protein metabolic process	2.82E-03
68	GO:0048827: phyllome development	2.82E-03
69	GO:0010358: leaf shaping	2.82E-03
70	GO:0009416: response to light stimulus	3.38E-03
71	GO:0080060: integument development	3.40E-03
72	GO:0010067: procambium histogenesis	3.40E-03
73	GO:0010014: meristem initiation	3.40E-03
74	GO:0042372: phylloquinone biosynthetic process	3.40E-03
75	GO:0010019: chloroplast-nucleus signaling pathway	3.40E-03
76	GO:0009955: adaxial/abaxial pattern specification	3.40E-03
77	GO:0009645: response to low light intensity stimulus	4.00E-03
78	GO:0043090: amino acid import	4.00E-03
79	GO:0008610: lipid biosynthetic process	4.65E-03
80	GO:0009819: drought recovery	4.65E-03
81	GO:0006633: fatty acid biosynthetic process	5.13E-03
82	GO:0009657: plastid organization	5.32E-03
83	GO:0032544: plastid translation	5.32E-03
84	GO:0044030: regulation of DNA methylation	5.32E-03
85	GO:0017004: cytochrome complex assembly	5.32E-03
86	GO:0071482: cellular response to light stimulus	5.32E-03
87	GO:0018298: protein-chromophore linkage	5.39E-03
88	GO:0090305: nucleic acid phosphodiester bond hydrolysis	6.03E-03
89	GO:0080144: amino acid homeostasis	6.03E-03
90	GO:0000373: Group II intron splicing	6.03E-03
91	GO:0000902: cell morphogenesis	6.03E-03
92	GO:0042761: very long-chain fatty acid biosynthetic process	6.77E-03
93	GO:1900865: chloroplast RNA modification	6.77E-03
94	GO:0016051: carbohydrate biosynthetic process	6.83E-03
95	GO:0009637: response to blue light	6.83E-03
96	GO:0009853: photorespiration	6.83E-03
97	GO:0048829: root cap development	7.54E-03
98	GO:0019684: photosynthesis, light reaction	8.35E-03
99	GO:0010072: primary shoot apical meristem specification	8.35E-03
100	GO:0009089: lysine biosynthetic process via diaminopimelate	8.35E-03
101	GO:0006352: DNA-templated transcription, initiation	8.35E-03
102	GO:0010114: response to red light	8.82E-03
103	GO:0006790: sulfur compound metabolic process	9.17E-03
104	GO:0010229: inflorescence development	1.00E-02
105	GO:0007034: vacuolar transport	1.09E-02
106	GO:0010223: secondary shoot formation	1.09E-02
107	GO:0010540: basipetal auxin transport	1.09E-02
108	GO:0010143: cutin biosynthetic process	1.09E-02
109	GO:0080188: RNA-directed DNA methylation	1.18E-02
110	GO:0070588: calcium ion transmembrane transport	1.18E-02
111	GO:0046854: phosphatidylinositol phosphorylation	1.18E-02
112	GO:0009736: cytokinin-activated signaling pathway	1.19E-02
113	GO:0010025: wax biosynthetic process	1.28E-02
114	GO:0006833: water transport	1.28E-02
115	GO:0019762: glucosinolate catabolic process	1.28E-02
116	GO:0009944: polarity specification of adaxial/abaxial axis	1.38E-02
117	GO:0000027: ribosomal large subunit assembly	1.38E-02
118	GO:0080147: root hair cell development	1.38E-02
119	GO:0007010: cytoskeleton organization	1.38E-02
120	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.38E-02
121	GO:0006418: tRNA aminoacylation for protein translation	1.48E-02
122	GO:0007017: microtubule-based process	1.48E-02
123	GO:0003333: amino acid transmembrane transport	1.58E-02
124	GO:0016998: cell wall macromolecule catabolic process	1.58E-02
125	GO:0061077: chaperone-mediated protein folding	1.58E-02
126	GO:0016226: iron-sulfur cluster assembly	1.68E-02
127	GO:0080092: regulation of pollen tube growth	1.68E-02
128	GO:0030245: cellulose catabolic process	1.68E-02
129	GO:0009294: DNA mediated transformation	1.79E-02
130	GO:0001944: vasculature development	1.79E-02
131	GO:0019722: calcium-mediated signaling	1.90E-02
132	GO:0010089: xylem development	1.90E-02
133	GO:0000271: polysaccharide biosynthetic process	2.13E-02
134	GO:0034220: ion transmembrane transport	2.13E-02
135	GO:0000413: protein peptidyl-prolyl isomerization	2.13E-02
136	GO:0010087: phloem or xylem histogenesis	2.13E-02
137	GO:0045489: pectin biosynthetic process	2.24E-02
138	GO:0009741: response to brassinosteroid	2.24E-02
139	GO:0010268: brassinosteroid homeostasis	2.24E-02
140	GO:0048544: recognition of pollen	2.36E-02
141	GO:0009753: response to jasmonic acid	2.37E-02
142	GO:0019252: starch biosynthetic process	2.48E-02
143	GO:0008654: phospholipid biosynthetic process	2.48E-02
144	GO:0000302: response to reactive oxygen species	2.61E-02
145	GO:0016132: brassinosteroid biosynthetic process	2.61E-02
146	GO:0010090: trichome morphogenesis	2.86E-02
147	GO:1901657: glycosyl compound metabolic process	2.86E-02
148	GO:0016125: sterol metabolic process	2.99E-02
149	GO:0007267: cell-cell signaling	3.12E-02
150	GO:0009911: positive regulation of flower development	3.39E-02
151	GO:0010027: thylakoid membrane organization	3.39E-02
152	GO:0010411: xyloglucan metabolic process	3.80E-02
153	GO:0009735: response to cytokinin	3.96E-02
154	GO:0030154: cell differentiation	4.06E-02
155	GO:0048481: plant ovule development	4.09E-02
156	GO:0000160: phosphorelay signal transduction system	4.24E-02
157	GO:0009407: toxin catabolic process	4.38E-02
158	GO:0010218: response to far red light	4.38E-02
159	GO:0010119: regulation of stomatal movement	4.53E-02
160	GO:0009631: cold acclimation	4.53E-02
161	GO:0006865: amino acid transport	4.69E-02
162	GO:0009867: jasmonic acid mediated signaling pathway	4.84E-02
163	GO:0009860: pollen tube growth	4.88E-02
164	GO:0034599: cellular response to oxidative stress	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
2	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
3	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
4	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
5	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
6	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
7	GO:0046577: long-chain-alcohol oxidase activity	0.00E+00
8	GO:0016149: translation release factor activity, codon specific	2.59E-05
9	GO:0001872: (1->3)-beta-D-glucan binding	2.59E-05
10	GO:0016788: hydrolase activity, acting on ester bonds	6.85E-05
11	GO:0052689: carboxylic ester hydrolase activity	1.40E-04
12	GO:0051753: mannan synthase activity	1.49E-04
13	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.49E-04
14	GO:0051920: peroxiredoxin activity	1.49E-04
15	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.12E-04
16	GO:0016209: antioxidant activity	2.48E-04
17	GO:0016041: glutamate synthase (ferredoxin) activity	2.63E-04
18	GO:0010012: steroid 22-alpha hydroxylase activity	2.63E-04
19	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	2.63E-04
20	GO:0003747: translation release factor activity	3.70E-04
21	GO:0008289: lipid binding	5.39E-04
22	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.78E-04
23	GO:0008967: phosphoglycolate phosphatase activity	5.78E-04
24	GO:0000234: phosphoethanolamine N-methyltransferase activity	5.78E-04
25	GO:0047746: chlorophyllase activity	5.78E-04
26	GO:0004617: phosphoglycerate dehydrogenase activity	5.78E-04
27	GO:0050734: hydroxycinnamoyltransferase activity	9.39E-04
28	GO:0002161: aminoacyl-tRNA editing activity	9.39E-04
29	GO:0030267: glyoxylate reductase (NADP) activity	9.39E-04
30	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	9.39E-04
31	GO:0008864: formyltetrahydrofolate deformylase activity	9.39E-04
32	GO:0004014: adenosylmethionine decarboxylase activity	9.39E-04
33	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.07E-03
34	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.07E-03
35	GO:0031409: pigment binding	1.07E-03
36	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.07E-03
37	GO:0005528: FK506 binding	1.18E-03
38	GO:0003999: adenine phosphoribosyltransferase activity	1.34E-03
39	GO:0010328: auxin influx transmembrane transporter activity	1.79E-03
40	GO:1990137: plant seed peroxidase activity	1.79E-03
41	GO:0010385: double-stranded methylated DNA binding	1.79E-03
42	GO:0004659: prenyltransferase activity	1.79E-03
43	GO:0001053: plastid sigma factor activity	1.79E-03
44	GO:0016987: sigma factor activity	1.79E-03
45	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.29E-03
46	GO:0051538: 3 iron, 4 sulfur cluster binding	2.29E-03
47	GO:0008374: O-acyltransferase activity	2.29E-03
48	GO:0004130: cytochrome-c peroxidase activity	2.82E-03
49	GO:0016208: AMP binding	2.82E-03
50	GO:0016688: L-ascorbate peroxidase activity	2.82E-03
51	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.82E-03
52	GO:0005509: calcium ion binding	3.00E-03
53	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.40E-03
54	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.40E-03
55	GO:0004747: ribokinase activity	3.40E-03
56	GO:0008235: metalloexopeptidase activity	4.00E-03
57	GO:0016168: chlorophyll binding	4.37E-03
58	GO:0008865: fructokinase activity	4.65E-03
59	GO:0030247: polysaccharide binding	4.87E-03
60	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	5.49E-03
61	GO:0009055: electron carrier activity	5.88E-03
62	GO:0005384: manganese ion transmembrane transporter activity	6.77E-03
63	GO:0030234: enzyme regulator activity	7.54E-03
64	GO:0015386: potassium:proton antiporter activity	8.35E-03
65	GO:0005089: Rho guanyl-nucleotide exchange factor activity	8.35E-03
66	GO:0004177: aminopeptidase activity	8.35E-03
67	GO:0000049: tRNA binding	9.17E-03
68	GO:0046872: metal ion binding	9.34E-03
69	GO:0043621: protein self-association	9.55E-03
70	GO:0004565: beta-galactosidase activity	1.00E-02
71	GO:0004089: carbonate dehydratase activity	1.00E-02
72	GO:0015095: magnesium ion transmembrane transporter activity	1.00E-02
73	GO:0031072: heat shock protein binding	1.00E-02
74	GO:0005262: calcium channel activity	1.00E-02
75	GO:0015114: phosphate ion transmembrane transporter activity	1.00E-02
76	GO:0008083: growth factor activity	1.09E-02
77	GO:0015171: amino acid transmembrane transporter activity	1.32E-02
78	GO:0051536: iron-sulfur cluster binding	1.38E-02
79	GO:0004857: enzyme inhibitor activity	1.38E-02
80	GO:0015079: potassium ion transmembrane transporter activity	1.48E-02
81	GO:0008324: cation transmembrane transporter activity	1.48E-02
82	GO:0016787: hydrolase activity	1.55E-02
83	GO:0004176: ATP-dependent peptidase activity	1.58E-02
84	GO:0033612: receptor serine/threonine kinase binding	1.58E-02
85	GO:0030599: pectinesterase activity	1.60E-02
86	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.68E-02
87	GO:0016746: transferase activity, transferring acyl groups	1.75E-02
88	GO:0008810: cellulase activity	1.79E-02
89	GO:0003756: protein disulfide isomerase activity	1.90E-02
90	GO:0004812: aminoacyl-tRNA ligase activity	2.01E-02
91	GO:0005102: receptor binding	2.01E-02
92	GO:0016758: transferase activity, transferring hexosyl groups	2.07E-02
93	GO:0004402: histone acetyltransferase activity	2.13E-02
94	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.19E-02
95	GO:0001085: RNA polymerase II transcription factor binding	2.24E-02
96	GO:0016301: kinase activity	2.53E-02
97	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.61E-02
98	GO:0004518: nuclease activity	2.73E-02
99	GO:0000156: phosphorelay response regulator activity	2.86E-02
100	GO:0016759: cellulose synthase activity	2.99E-02
101	GO:0008017: microtubule binding	3.08E-02
102	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.12E-02
103	GO:0008237: metallopeptidase activity	3.12E-02
104	GO:0005200: structural constituent of cytoskeleton	3.12E-02
105	GO:0016597: amino acid binding	3.25E-02
106	GO:0015250: water channel activity	3.39E-02
107	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.66E-02
108	GO:0042802: identical protein binding	3.73E-02
109	GO:0004683: calmodulin-dependent protein kinase activity	3.80E-02
110	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.80E-02
111	GO:0102483: scopolin beta-glucosidase activity	3.80E-02
112	GO:0004222: metalloendopeptidase activity	4.38E-02
113	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	4.53E-02
114	GO:0004601: peroxidase activity	4.54E-02

Rank	GO Term	Adjusted P value
1	GO:0009575: chromoplast stroma	0.00E+00
2	GO:0031224: intrinsic component of membrane	0.00E+00
3	GO:0009507: chloroplast	8.50E-19
4	GO:0009535: chloroplast thylakoid membrane	5.76E-12
5	GO:0009543: chloroplast thylakoid lumen	1.07E-09
6	GO:0009941: chloroplast envelope	2.53E-09
7	GO:0009570: chloroplast stroma	3.42E-08
8	GO:0031977: thylakoid lumen	4.56E-07
9	GO:0009579: thylakoid	1.15E-06
10	GO:0009534: chloroplast thylakoid	1.21E-06
11	GO:0046658: anchored component of plasma membrane	4.08E-06
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.14E-05
13	GO:0009654: photosystem II oxygen evolving complex	9.59E-05
14	GO:0031969: chloroplast membrane	1.11E-04
15	GO:0031225: anchored component of membrane	1.42E-04
16	GO:0009782: photosystem I antenna complex	2.63E-04
17	GO:0019898: extrinsic component of membrane	2.75E-04
18	GO:0048046: apoplast	3.02E-04
19	GO:0005618: cell wall	3.97E-04
20	GO:0030095: chloroplast photosystem II	8.62E-04
21	GO:0030076: light-harvesting complex	9.62E-04
22	GO:0005874: microtubule	2.77E-03
23	GO:0000815: ESCRT III complex	3.40E-03
24	GO:0010287: plastoglobule	3.58E-03
25	GO:0005886: plasma membrane	3.84E-03
26	GO:0009533: chloroplast stromal thylakoid	4.00E-03
27	GO:0005811: lipid particle	5.32E-03
28	GO:0045298: tubulin complex	6.03E-03
29	GO:0016324: apical plasma membrane	7.54E-03
30	GO:0055028: cortical microtubule	7.54E-03
31	GO:0009508: plastid chromosome	1.00E-02
32	GO:0005875: microtubule associated complex	1.28E-02
33	GO:0042651: thylakoid membrane	1.48E-02
34	GO:0009532: plastid stroma	1.58E-02
35	GO:0009706: chloroplast inner membrane	1.70E-02
36	GO:0009505: plant-type cell wall	1.70E-02
37	GO:0000139: Golgi membrane	1.94E-02
38	GO:0005770: late endosome	2.24E-02
39	GO:0016021: integral component of membrane	2.25E-02
40	GO:0009522: photosystem I	2.36E-02
41	GO:0009295: nucleoid	3.12E-02
42	GO:0005778: peroxisomal membrane	3.12E-02
43	GO:0010319: stromule	3.12E-02
44	GO:0005615: extracellular space	3.29E-02
45	GO:0030529: intracellular ribonucleoprotein complex	3.39E-02
46	GO:0005667: transcription factor complex	3.66E-02
47	GO:0005576: extracellular region	3.68E-02