co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G12470

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
2	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
3	GO:0015995: chlorophyll biosynthetic process	1.31E-05
4	GO:0046467: membrane lipid biosynthetic process	3.77E-05
5	GO:0010588: cotyledon vascular tissue pattern formation	4.90E-05
6	GO:0080022: primary root development	1.63E-04
7	GO:0010087: phloem or xylem histogenesis	1.63E-04
8	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.40E-04
9	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	5.07E-04
10	GO:0009228: thiamine biosynthetic process	5.07E-04
11	GO:0010019: chloroplast-nucleus signaling pathway	6.05E-04
12	GO:1900057: positive regulation of leaf senescence	7.07E-04
13	GO:0010078: maintenance of root meristem identity	8.13E-04
14	GO:0055075: potassium ion homeostasis	8.13E-04
15	GO:0043562: cellular response to nitrogen levels	9.23E-04
16	GO:0009657: plastid organization	9.23E-04
17	GO:0006857: oligopeptide transport	9.58E-04
18	GO:0009245: lipid A biosynthetic process	1.04E-03
19	GO:0010206: photosystem II repair	1.04E-03
20	GO:0048367: shoot system development	1.08E-03
21	GO:1903507: negative regulation of nucleic acid-templated transcription	1.40E-03
22	GO:0009684: indoleacetic acid biosynthetic process	1.40E-03
23	GO:0009773: photosynthetic electron transport in photosystem I	1.40E-03
24	GO:0043085: positive regulation of catalytic activity	1.40E-03
25	GO:0015706: nitrate transport	1.53E-03
26	GO:0048467: gynoecium development	1.81E-03
27	GO:0010207: photosystem II assembly	1.81E-03
28	GO:0071732: cellular response to nitric oxide	1.95E-03
29	GO:0010030: positive regulation of seed germination	1.95E-03
30	GO:0010167: response to nitrate	1.95E-03
31	GO:0007166: cell surface receptor signaling pathway	2.43E-03
32	GO:0016114: terpenoid biosynthetic process	2.56E-03
33	GO:0048511: rhythmic process	2.56E-03
34	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.72E-03
35	GO:0071369: cellular response to ethylene stimulus	2.89E-03
36	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.22E-03
37	GO:0042631: cellular response to water deprivation	3.40E-03
38	GO:0042335: cuticle development	3.40E-03
39	GO:0010305: leaf vascular tissue pattern formation	3.58E-03
40	GO:0009958: positive gravitropism	3.58E-03
41	GO:0042752: regulation of circadian rhythm	3.76E-03
42	GO:0009851: auxin biosynthetic process	3.94E-03
43	GO:0048825: cotyledon development	3.94E-03
44	GO:0016032: viral process	4.32E-03
45	GO:0071281: cellular response to iron ion	4.51E-03
46	GO:0009627: systemic acquired resistance	5.73E-03
47	GO:0048527: lateral root development	7.05E-03
48	GO:0034599: cellular response to oxidative stress	7.75E-03
49	GO:0010114: response to red light	8.96E-03
50	GO:0031347: regulation of defense response	1.02E-02
51	GO:0009664: plant-type cell wall organization	1.05E-02
52	GO:0009416: response to light stimulus	1.06E-02
53	GO:0006364: rRNA processing	1.11E-02
54	GO:0009585: red, far-red light phototransduction	1.11E-02
55	GO:0006417: regulation of translation	1.19E-02
56	GO:0055085: transmembrane transport	1.34E-02
57	GO:0006396: RNA processing	1.45E-02
58	GO:0006633: fatty acid biosynthetic process	1.95E-02
59	GO:0010150: leaf senescence	2.09E-02
60	GO:0042254: ribosome biogenesis	2.89E-02
61	GO:0009723: response to ethylene	3.16E-02
62	GO:0006810: transport	3.16E-02
63	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.40E-02
64	GO:0045454: cell redox homeostasis	3.78E-02
65	GO:0032259: methylation	4.25E-02
66	GO:0016042: lipid catabolic process	4.30E-02
67	GO:0006629: lipid metabolic process	4.39E-02
68	GO:0006397: mRNA processing	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
2	GO:0046906: tetrapyrrole binding	3.77E-05
3	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	9.40E-05
4	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	9.40E-05
5	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	9.40E-05
6	GO:0016846: carbon-sulfur lyase activity	4.13E-04
7	GO:0035673: oligopeptide transmembrane transporter activity	5.07E-04
8	GO:0031177: phosphopantetheine binding	5.07E-04
9	GO:0000035: acyl binding	6.05E-04
10	GO:0019899: enzyme binding	7.07E-04
11	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	8.13E-04
12	GO:0015112: nitrate transmembrane transporter activity	1.15E-03
13	GO:0047372: acylglycerol lipase activity	1.40E-03
14	GO:0008794: arsenate reductase (glutaredoxin) activity	1.40E-03
15	GO:0015198: oligopeptide transporter activity	1.53E-03
16	GO:0031072: heat shock protein binding	1.67E-03
17	GO:0004565: beta-galactosidase activity	1.67E-03
18	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.99E-03
19	GO:0003714: transcription corepressor activity	2.25E-03
20	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.70E-03
21	GO:0003727: single-stranded RNA binding	3.05E-03
22	GO:0003756: protein disulfide isomerase activity	3.05E-03
23	GO:0005215: transporter activity	4.37E-03
24	GO:0009055: electron carrier activity	6.39E-03
25	GO:0005096: GTPase activator activity	6.60E-03
26	GO:0003746: translation elongation factor activity	7.51E-03
27	GO:0051537: 2 iron, 2 sulfur cluster binding	9.47E-03
28	GO:0043621: protein self-association	9.47E-03
29	GO:0015293: symporter activity	9.73E-03
30	GO:0022857: transmembrane transporter activity	1.36E-02
31	GO:0003779: actin binding	1.39E-02
32	GO:0051082: unfolded protein binding	1.42E-02
33	GO:0015035: protein disulfide oxidoreductase activity	1.45E-02
34	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.69E-02
35	GO:0015144: carbohydrate transmembrane transporter activity	1.89E-02
36	GO:0005351: sugar:proton symporter activity	2.06E-02
37	GO:0003743: translation initiation factor activity	2.33E-02
38	GO:0042802: identical protein binding	2.48E-02
39	GO:0046982: protein heterodimerization activity	2.81E-02
40	GO:0016788: hydrolase activity, acting on ester bonds	2.89E-02
41	GO:0004497: monooxygenase activity	3.32E-02
42	GO:0052689: carboxylic ester hydrolase activity	3.57E-02
43	GO:0004871: signal transducer activity	3.91E-02

Rank	GO Term	Adjusted P value
1	GO:0009941: chloroplast envelope	7.85E-06
2	GO:0031969: chloroplast membrane	3.88E-05
3	GO:0030093: chloroplast photosystem I	9.40E-05
4	GO:0009507: chloroplast	1.46E-04
5	GO:0009531: secondary cell wall	2.40E-04
6	GO:0009534: chloroplast thylakoid	2.98E-04
7	GO:0009535: chloroplast thylakoid membrane	4.44E-04
8	GO:0009570: chloroplast stroma	7.22E-04
9	GO:0008180: COP9 signalosome	1.04E-03
10	GO:0009508: plastid chromosome	1.67E-03
11	GO:0016602: CCAAT-binding factor complex	1.67E-03
12	GO:0009295: nucleoid	4.90E-03
13	GO:0005886: plasma membrane	6.22E-03
14	GO:0019005: SCF ubiquitin ligase complex	6.38E-03
15	GO:0016021: integral component of membrane	8.18E-03
16	GO:0031977: thylakoid lumen	8.47E-03
17	GO:0000502: proteasome complex	1.11E-02
18	GO:0009579: thylakoid	1.27E-02
19	GO:0009543: chloroplast thylakoid lumen	1.66E-02