co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G12250

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:2000505: regulation of energy homeostasis	0.00E+00
3	GO:0006066: alcohol metabolic process	0.00E+00
4	GO:0033494: ferulate metabolic process	0.00E+00
5	GO:0009773: photosynthetic electron transport in photosystem I	3.09E-10
6	GO:0015979: photosynthesis	9.77E-10
7	GO:0010196: nonphotochemical quenching	1.02E-05
8	GO:0090391: granum assembly	2.39E-05
9	GO:0042335: cuticle development	3.37E-05
10	GO:0080170: hydrogen peroxide transmembrane transport	5.22E-05
11	GO:0015995: chlorophyll biosynthetic process	1.59E-04
12	GO:0009735: response to cytokinin	1.68E-04
13	GO:1904966: positive regulation of vitamin E biosynthetic process	3.92E-04
14	GO:1902025: nitrate import	3.92E-04
15	GO:1904964: positive regulation of phytol biosynthetic process	3.92E-04
16	GO:0080051: cutin transport	3.92E-04
17	GO:0033481: galacturonate biosynthetic process	3.92E-04
18	GO:0006106: fumarate metabolic process	3.92E-04
19	GO:0090548: response to nitrate starvation	3.92E-04
20	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	3.92E-04
21	GO:0071588: hydrogen peroxide mediated signaling pathway	3.92E-04
22	GO:0034220: ion transmembrane transport	4.45E-04
23	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.45E-04
24	GO:0010205: photoinhibition	7.75E-04
25	GO:0015908: fatty acid transport	8.49E-04
26	GO:0001736: establishment of planar polarity	8.49E-04
27	GO:0010024: phytochromobilin biosynthetic process	8.49E-04
28	GO:0043255: regulation of carbohydrate biosynthetic process	8.49E-04
29	GO:0010115: regulation of abscisic acid biosynthetic process	8.49E-04
30	GO:1902326: positive regulation of chlorophyll biosynthetic process	8.49E-04
31	GO:0016042: lipid catabolic process	8.60E-04
32	GO:0010027: thylakoid membrane organization	1.02E-03
33	GO:0016024: CDP-diacylglycerol biosynthetic process	1.19E-03
34	GO:0042254: ribosome biogenesis	1.24E-03
35	GO:0006006: glucose metabolic process	1.34E-03
36	GO:0006518: peptide metabolic process	1.38E-03
37	GO:0006788: heme oxidation	1.38E-03
38	GO:0015714: phosphoenolpyruvate transport	1.38E-03
39	GO:0018298: protein-chromophore linkage	1.43E-03
40	GO:0010143: cutin biosynthetic process	1.51E-03
41	GO:0010167: response to nitrate	1.70E-03
42	GO:0006636: unsaturated fatty acid biosynthetic process	1.89E-03
43	GO:0006833: water transport	1.89E-03
44	GO:1901332: negative regulation of lateral root development	1.99E-03
45	GO:0071484: cellular response to light intensity	1.99E-03
46	GO:0051639: actin filament network formation	1.99E-03
47	GO:0009152: purine ribonucleotide biosynthetic process	1.99E-03
48	GO:0046653: tetrahydrofolate metabolic process	1.99E-03
49	GO:0009800: cinnamic acid biosynthetic process	1.99E-03
50	GO:0009650: UV protection	1.99E-03
51	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.99E-03
52	GO:0016998: cell wall macromolecule catabolic process	2.54E-03
53	GO:0031408: oxylipin biosynthetic process	2.54E-03
54	GO:0015713: phosphoglycerate transport	2.67E-03
55	GO:0010222: stem vascular tissue pattern formation	2.67E-03
56	GO:0010109: regulation of photosynthesis	2.67E-03
57	GO:0051764: actin crosslink formation	2.67E-03
58	GO:0009765: photosynthesis, light harvesting	2.67E-03
59	GO:0045727: positive regulation of translation	2.67E-03
60	GO:0015994: chlorophyll metabolic process	2.67E-03
61	GO:0030104: water homeostasis	2.67E-03
62	GO:0006869: lipid transport	2.84E-03
63	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.04E-03
64	GO:0006810: transport	3.15E-03
65	GO:0006564: L-serine biosynthetic process	3.42E-03
66	GO:0006461: protein complex assembly	3.42E-03
67	GO:0080110: sporopollenin biosynthetic process	3.42E-03
68	GO:0009697: salicylic acid biosynthetic process	3.42E-03
69	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	4.23E-03
70	GO:0010337: regulation of salicylic acid metabolic process	4.23E-03
71	GO:0006559: L-phenylalanine catabolic process	4.23E-03
72	GO:0006561: proline biosynthetic process	4.23E-03
73	GO:0006751: glutathione catabolic process	4.23E-03
74	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.23E-03
75	GO:0009913: epidermal cell differentiation	4.23E-03
76	GO:0006655: phosphatidylglycerol biosynthetic process	4.23E-03
77	GO:0010019: chloroplast-nucleus signaling pathway	5.09E-03
78	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	5.09E-03
79	GO:0042372: phylloquinone biosynthetic process	5.09E-03
80	GO:1900057: positive regulation of leaf senescence	6.02E-03
81	GO:0010444: guard mother cell differentiation	6.02E-03
82	GO:0050829: defense response to Gram-negative bacterium	6.02E-03
83	GO:0006400: tRNA modification	6.02E-03
84	GO:0009395: phospholipid catabolic process	6.02E-03
85	GO:0009772: photosynthetic electron transport in photosystem II	6.02E-03
86	GO:0009828: plant-type cell wall loosening	6.25E-03
87	GO:0006605: protein targeting	7.00E-03
88	GO:0046620: regulation of organ growth	7.00E-03
89	GO:0031540: regulation of anthocyanin biosynthetic process	7.00E-03
90	GO:0055075: potassium ion homeostasis	7.00E-03
91	GO:0030091: protein repair	7.00E-03
92	GO:0008610: lipid biosynthetic process	7.00E-03
93	GO:0009657: plastid organization	8.03E-03
94	GO:0032544: plastid translation	8.03E-03
95	GO:0042128: nitrate assimilation	8.34E-03
96	GO:0000373: Group II intron splicing	9.12E-03
97	GO:0009051: pentose-phosphate shunt, oxidative branch	9.12E-03
98	GO:0010206: photosystem II repair	9.12E-03
99	GO:0034765: regulation of ion transmembrane transport	9.12E-03
100	GO:0009416: response to light stimulus	9.54E-03
101	GO:0010311: lateral root formation	1.03E-02
102	GO:0009638: phototropism	1.03E-02
103	GO:0006633: fatty acid biosynthetic process	1.09E-02
104	GO:0009631: cold acclimation	1.13E-02
105	GO:0006032: chitin catabolic process	1.14E-02
106	GO:0009688: abscisic acid biosynthetic process	1.14E-02
107	GO:0048829: root cap development	1.14E-02
108	GO:0006949: syncytium formation	1.14E-02
109	GO:0009299: mRNA transcription	1.14E-02
110	GO:0045490: pectin catabolic process	1.23E-02
111	GO:0009750: response to fructose	1.27E-02
112	GO:0018119: peptidyl-cysteine S-nitrosylation	1.27E-02
113	GO:0048765: root hair cell differentiation	1.27E-02
114	GO:0046856: phosphatidylinositol dephosphorylation	1.27E-02
115	GO:0000038: very long-chain fatty acid metabolic process	1.27E-02
116	GO:0015706: nitrate transport	1.40E-02
117	GO:0009733: response to auxin	1.41E-02
118	GO:0055085: transmembrane transport	1.44E-02
119	GO:0010628: positive regulation of gene expression	1.53E-02
120	GO:0010102: lateral root morphogenesis	1.53E-02
121	GO:0009785: blue light signaling pathway	1.53E-02
122	GO:0006108: malate metabolic process	1.53E-02
123	GO:0010229: inflorescence development	1.53E-02
124	GO:0009718: anthocyanin-containing compound biosynthetic process	1.53E-02
125	GO:0009725: response to hormone	1.53E-02
126	GO:0010588: cotyledon vascular tissue pattern formation	1.53E-02
127	GO:0010114: response to red light	1.60E-02
128	GO:0009926: auxin polar transport	1.60E-02
129	GO:0019253: reductive pentose-phosphate cycle	1.66E-02
130	GO:0048467: gynoecium development	1.66E-02
131	GO:0010207: photosystem II assembly	1.66E-02
132	GO:0071732: cellular response to nitric oxide	1.81E-02
133	GO:0010030: positive regulation of seed germination	1.81E-02
134	GO:0010053: root epidermal cell differentiation	1.81E-02
135	GO:0009225: nucleotide-sugar metabolic process	1.81E-02
136	GO:0009825: multidimensional cell growth	1.81E-02
137	GO:0009737: response to abscisic acid	1.93E-02
138	GO:0042023: DNA endoreduplication	1.95E-02
139	GO:0019762: glucosinolate catabolic process	1.95E-02
140	GO:0010025: wax biosynthetic process	1.95E-02
141	GO:0009664: plant-type cell wall organization	2.02E-02
142	GO:0000027: ribosomal large subunit assembly	2.10E-02
143	GO:0051017: actin filament bundle assembly	2.10E-02
144	GO:2000377: regulation of reactive oxygen species metabolic process	2.10E-02
145	GO:0006487: protein N-linked glycosylation	2.10E-02
146	GO:0009651: response to salt stress	2.14E-02
147	GO:0009809: lignin biosynthetic process	2.16E-02
148	GO:0006364: rRNA processing	2.16E-02
149	GO:0009734: auxin-activated signaling pathway	2.17E-02
150	GO:0009695: jasmonic acid biosynthetic process	2.25E-02
151	GO:0009768: photosynthesis, light harvesting in photosystem I	2.25E-02
152	GO:0019953: sexual reproduction	2.25E-02
153	GO:0006857: oligopeptide transport	2.32E-02
154	GO:0003333: amino acid transmembrane transport	2.41E-02
155	GO:0048511: rhythmic process	2.41E-02
156	GO:0009269: response to desiccation	2.41E-02
157	GO:0006096: glycolytic process	2.56E-02
158	GO:0030245: cellulose catabolic process	2.57E-02
159	GO:0009411: response to UV	2.73E-02
160	GO:0071369: cellular response to ethylene stimulus	2.73E-02
161	GO:0080167: response to karrikin	2.80E-02
162	GO:0042127: regulation of cell proliferation	2.90E-02
163	GO:0009306: protein secretion	2.90E-02
164	GO:0010584: pollen exine formation	2.90E-02
165	GO:0009414: response to water deprivation	3.05E-02
166	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.07E-02
167	GO:0009624: response to nematode	3.08E-02
168	GO:0009611: response to wounding	3.15E-02
169	GO:0071555: cell wall organization	3.18E-02
170	GO:0042391: regulation of membrane potential	3.25E-02
171	GO:0080022: primary root development	3.25E-02
172	GO:0042631: cellular response to water deprivation	3.25E-02
173	GO:0009742: brassinosteroid mediated signaling pathway	3.27E-02
174	GO:0051726: regulation of cell cycle	3.27E-02
175	GO:0071472: cellular response to salt stress	3.42E-02
176	GO:0010305: leaf vascular tissue pattern formation	3.42E-02
177	GO:0010182: sugar mediated signaling pathway	3.42E-02
178	GO:0009741: response to brassinosteroid	3.42E-02
179	GO:0009958: positive gravitropism	3.42E-02
180	GO:0048544: recognition of pollen	3.61E-02
181	GO:0015986: ATP synthesis coupled proton transport	3.61E-02
182	GO:0042752: regulation of circadian rhythm	3.61E-02
183	GO:0000302: response to reactive oxygen species	3.98E-02
184	GO:0055114: oxidation-reduction process	4.00E-02
185	GO:0009058: biosynthetic process	4.06E-02
186	GO:0009630: gravitropism	4.17E-02
187	GO:0016032: viral process	4.17E-02
188	GO:0032259: methylation	4.30E-02
189	GO:0071281: cellular response to iron ion	4.36E-02
190	GO:0042744: hydrogen peroxide catabolic process	4.38E-02
191	GO:0009408: response to heat	4.53E-02
192	GO:0010252: auxin homeostasis	4.56E-02
193	GO:0071805: potassium ion transmembrane transport	4.76E-02
194	GO:0009753: response to jasmonic acid	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
2	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
3	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
4	GO:0046577: long-chain-alcohol oxidase activity	0.00E+00
5	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
6	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
7	GO:0005528: FK506 binding	9.16E-06
8	GO:0001872: (1->3)-beta-D-glucan binding	5.22E-05
9	GO:0004565: beta-galactosidase activity	9.89E-05
10	GO:0052689: carboxylic ester hydrolase activity	1.02E-04
11	GO:0016788: hydrolase activity, acting on ester bonds	2.73E-04
12	GO:0004321: fatty-acyl-CoA synthase activity	3.92E-04
13	GO:0008909: isochorismate synthase activity	3.92E-04
14	GO:0019210: kinase inhibitor activity	3.92E-04
15	GO:0045485: omega-6 fatty acid desaturase activity	3.92E-04
16	GO:0015245: fatty acid transporter activity	3.92E-04
17	GO:0004333: fumarate hydratase activity	3.92E-04
18	GO:0030794: (S)-coclaurine-N-methyltransferase activity	3.92E-04
19	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	3.92E-04
20	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.44E-04
21	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	8.49E-04
22	GO:0047746: chlorophyllase activity	8.49E-04
23	GO:0003839: gamma-glutamylcyclotransferase activity	8.49E-04
24	GO:0004617: phosphoglycerate dehydrogenase activity	8.49E-04
25	GO:0016630: protochlorophyllide reductase activity	8.49E-04
26	GO:0015250: water channel activity	1.02E-03
27	GO:0016168: chlorophyll binding	1.10E-03
28	GO:0016746: transferase activity, transferring acyl groups	1.21E-03
29	GO:0030247: polysaccharide binding	1.25E-03
30	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.38E-03
31	GO:0008864: formyltetrahydrofolate deformylase activity	1.38E-03
32	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.38E-03
33	GO:0050734: hydroxycinnamoyltransferase activity	1.38E-03
34	GO:0045548: phenylalanine ammonia-lyase activity	1.38E-03
35	GO:0019843: rRNA binding	1.63E-03
36	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	1.99E-03
37	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.99E-03
38	GO:0016851: magnesium chelatase activity	1.99E-03
39	GO:0050378: UDP-glucuronate 4-epimerase activity	2.67E-03
40	GO:0043495: protein anchor	2.67E-03
41	GO:0042277: peptide binding	2.67E-03
42	GO:0004392: heme oxygenase (decyclizing) activity	2.67E-03
43	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.67E-03
44	GO:0015120: phosphoglycerate transmembrane transporter activity	2.67E-03
45	GO:0010011: auxin binding	2.67E-03
46	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.67E-03
47	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	2.67E-03
48	GO:0010328: auxin influx transmembrane transporter activity	2.67E-03
49	GO:0052793: pectin acetylesterase activity	2.67E-03
50	GO:0022891: substrate-specific transmembrane transporter activity	3.04E-03
51	GO:0030570: pectate lyase activity	3.04E-03
52	GO:0015293: symporter activity	3.09E-03
53	GO:0003959: NADPH dehydrogenase activity	3.42E-03
54	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.84E-03
55	GO:0004130: cytochrome-c peroxidase activity	4.23E-03
56	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	4.23E-03
57	GO:0016688: L-ascorbate peroxidase activity	4.23E-03
58	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	4.23E-03
59	GO:0004629: phospholipase C activity	4.23E-03
60	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	4.23E-03
61	GO:0050662: coenzyme binding	4.49E-03
62	GO:0004435: phosphatidylinositol phospholipase C activity	5.09E-03
63	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	5.09E-03
64	GO:0005242: inward rectifier potassium channel activity	5.09E-03
65	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	5.09E-03
66	GO:0051753: mannan synthase activity	5.09E-03
67	GO:0004017: adenylate kinase activity	5.09E-03
68	GO:0019899: enzyme binding	6.02E-03
69	GO:0016491: oxidoreductase activity	6.95E-03
70	GO:0043022: ribosome binding	7.00E-03
71	GO:0052747: sinapyl alcohol dehydrogenase activity	7.00E-03
72	GO:0016597: amino acid binding	7.05E-03
73	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	8.03E-03
74	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	9.12E-03
75	GO:0016207: 4-coumarate-CoA ligase activity	9.12E-03
76	GO:0015112: nitrate transmembrane transporter activity	1.03E-02
77	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.08E-02
78	GO:0030234: enzyme regulator activity	1.14E-02
79	GO:0004568: chitinase activity	1.14E-02
80	GO:0008794: arsenate reductase (glutaredoxin) activity	1.27E-02
81	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.40E-02
82	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	1.40E-02
83	GO:0050661: NADP binding	1.42E-02
84	GO:0004022: alcohol dehydrogenase (NAD) activity	1.53E-02
85	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.54E-02
86	GO:0008266: poly(U) RNA binding	1.66E-02
87	GO:0042802: identical protein binding	1.67E-02
88	GO:0051287: NAD binding	1.94E-02
89	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.95E-02
90	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.95E-02
91	GO:0031409: pigment binding	1.95E-02
92	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.95E-02
93	GO:0016787: hydrolase activity	1.95E-02
94	GO:0008289: lipid binding	2.13E-02
95	GO:0004176: ATP-dependent peptidase activity	2.41E-02
96	GO:0008810: cellulase activity	2.73E-02
97	GO:0005249: voltage-gated potassium channel activity	3.25E-02
98	GO:0030551: cyclic nucleotide binding	3.25E-02
99	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.42E-02
100	GO:0004871: signal transducer activity	3.71E-02
101	GO:0005215: transporter activity	3.75E-02
102	GO:0004872: receptor activity	3.79E-02
103	GO:0019901: protein kinase binding	3.79E-02
104	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.98E-02
105	GO:0016829: lyase activity	4.17E-02
106	GO:0004518: nuclease activity	4.17E-02
107	GO:0000156: phosphorelay response regulator activity	4.36E-02
108	GO:0051015: actin filament binding	4.36E-02
109	GO:0016791: phosphatase activity	4.56E-02
110	GO:0009055: electron carrier activity	4.93E-02
111	GO:0046910: pectinesterase inhibitor activity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0044391: ribosomal subunit	0.00E+00
3	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
4	GO:0009507: chloroplast	3.91E-23
5	GO:0009535: chloroplast thylakoid membrane	1.50E-18
6	GO:0009534: chloroplast thylakoid	2.89E-18
7	GO:0009543: chloroplast thylakoid lumen	1.66E-15
8	GO:0009579: thylakoid	1.47E-13
9	GO:0009941: chloroplast envelope	3.90E-11
10	GO:0009570: chloroplast stroma	5.59E-09
11	GO:0031977: thylakoid lumen	1.31E-07
12	GO:0030095: chloroplast photosystem II	4.37E-06
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.00E-05
14	GO:0009523: photosystem II	5.20E-05
15	GO:0031969: chloroplast membrane	7.77E-05
16	GO:0048046: apoplast	8.83E-05
17	GO:0009654: photosystem II oxygen evolving complex	2.22E-04
18	GO:0045239: tricarboxylic acid cycle enzyme complex	3.92E-04
19	GO:0043674: columella	3.92E-04
20	GO:0019898: extrinsic component of membrane	5.89E-04
21	GO:0008180: COP9 signalosome	6.57E-04
22	GO:0030093: chloroplast photosystem I	8.49E-04
23	GO:0046658: anchored component of plasma membrane	9.17E-04
24	GO:0005618: cell wall	9.61E-04
25	GO:0005886: plasma membrane	1.16E-03
26	GO:0009897: external side of plasma membrane	1.38E-03
27	GO:0010007: magnesium chelatase complex	1.38E-03
28	GO:0010287: plastoglobule	1.50E-03
29	GO:0016021: integral component of membrane	1.99E-03
30	GO:0032432: actin filament bundle	1.99E-03
31	GO:0009505: plant-type cell wall	2.16E-03
32	GO:0031225: anchored component of membrane	2.17E-03
33	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	4.23E-03
34	GO:0009986: cell surface	6.02E-03
35	GO:0009533: chloroplast stromal thylakoid	6.02E-03
36	GO:0042807: central vacuole	6.02E-03
37	GO:0019005: SCF ubiquitin ligase complex	9.76E-03
38	GO:0005840: ribosome	1.24E-02
39	GO:0005884: actin filament	1.27E-02
40	GO:0009508: plastid chromosome	1.53E-02
41	GO:0005576: extracellular region	1.56E-02
42	GO:0030076: light-harvesting complex	1.81E-02
43	GO:0005887: integral component of plasma membrane	2.06E-02
44	GO:0000502: proteasome complex	2.16E-02
45	GO:0042651: thylakoid membrane	2.25E-02
46	GO:0016020: membrane	3.36E-02
47	GO:0009522: photosystem I	3.61E-02
48	GO:0032580: Golgi cisterna membrane	4.56E-02
49	GO:0009295: nucleoid	4.76E-02
50	GO:0010319: stromule	4.76E-02