co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G12110

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045740: positive regulation of DNA replication	0.00E+00
2	GO:0042821: pyridoxal biosynthetic process	0.00E+00
3	GO:0007638: mechanosensory behavior	0.00E+00
4	GO:0042820: vitamin B6 catabolic process	0.00E+00
5	GO:0071555: cell wall organization	2.01E-05
6	GO:1901599: (-)-pinoresinol biosynthetic process	1.42E-04
7	GO:0019510: S-adenosylhomocysteine catabolic process	1.42E-04
8	GO:0071277: cellular response to calcium ion	1.42E-04
9	GO:0009443: pyridoxal 5'-phosphate salvage	1.42E-04
10	GO:0015979: photosynthesis	1.52E-04
11	GO:0045454: cell redox homeostasis	1.68E-04
12	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.25E-04
13	GO:0033353: S-adenosylmethionine cycle	3.25E-04
14	GO:0019253: reductive pentose-phosphate cycle	3.70E-04
15	GO:0071492: cellular response to UV-A	5.33E-04
16	GO:0006065: UDP-glucuronate biosynthetic process	5.33E-04
17	GO:0090506: axillary shoot meristem initiation	5.33E-04
18	GO:0006000: fructose metabolic process	5.33E-04
19	GO:0009062: fatty acid catabolic process	5.33E-04
20	GO:0007231: osmosensory signaling pathway	7.63E-04
21	GO:0010037: response to carbon dioxide	1.01E-03
22	GO:0009956: radial pattern formation	1.01E-03
23	GO:0015976: carbon utilization	1.01E-03
24	GO:0071486: cellular response to high light intensity	1.01E-03
25	GO:0009765: photosynthesis, light harvesting	1.01E-03
26	GO:2000122: negative regulation of stomatal complex development	1.01E-03
27	GO:0033500: carbohydrate homeostasis	1.01E-03
28	GO:0031122: cytoplasmic microtubule organization	1.01E-03
29	GO:0016123: xanthophyll biosynthetic process	1.28E-03
30	GO:0048359: mucilage metabolic process involved in seed coat development	1.28E-03
31	GO:0016120: carotene biosynthetic process	1.28E-03
32	GO:0010583: response to cyclopentenone	1.30E-03
33	GO:0009828: plant-type cell wall loosening	1.47E-03
34	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.57E-03
35	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	1.57E-03
36	GO:0009955: adaxial/abaxial pattern specification	1.88E-03
37	GO:0010067: procambium histogenesis	1.88E-03
38	GO:1901259: chloroplast rRNA processing	1.88E-03
39	GO:0045490: pectin catabolic process	1.90E-03
40	GO:0050790: regulation of catalytic activity	2.21E-03
41	GO:0009395: phospholipid catabolic process	2.21E-03
42	GO:0007050: cell cycle arrest	2.21E-03
43	GO:0000082: G1/S transition of mitotic cell cycle	2.21E-03
44	GO:0009817: defense response to fungus, incompatible interaction	2.27E-03
45	GO:0042742: defense response to bacterium	2.47E-03
46	GO:0009704: de-etiolation	2.56E-03
47	GO:0007155: cell adhesion	2.56E-03
48	GO:0006875: cellular metal ion homeostasis	2.56E-03
49	GO:0009735: response to cytokinin	2.89E-03
50	GO:0032544: plastid translation	2.93E-03
51	GO:0006002: fructose 6-phosphate metabolic process	2.93E-03
52	GO:0048589: developmental growth	3.31E-03
53	GO:0090333: regulation of stomatal closure	3.31E-03
54	GO:0006949: syncytium formation	4.12E-03
55	GO:0010192: mucilage biosynthetic process	4.12E-03
56	GO:0019538: protein metabolic process	4.12E-03
57	GO:0009409: response to cold	4.20E-03
58	GO:0018119: peptidyl-cysteine S-nitrosylation	4.55E-03
59	GO:0010015: root morphogenesis	4.55E-03
60	GO:0006816: calcium ion transport	4.55E-03
61	GO:0009773: photosynthetic electron transport in photosystem I	4.55E-03
62	GO:0009807: lignan biosynthetic process	4.55E-03
63	GO:0009664: plant-type cell wall organization	4.61E-03
64	GO:0045037: protein import into chloroplast stroma	4.99E-03
65	GO:0050826: response to freezing	5.45E-03
66	GO:0009725: response to hormone	5.45E-03
67	GO:0006094: gluconeogenesis	5.45E-03
68	GO:0005986: sucrose biosynthetic process	5.45E-03
69	GO:0010102: lateral root morphogenesis	5.45E-03
70	GO:0010223: secondary shoot formation	5.92E-03
71	GO:0009933: meristem structural organization	5.92E-03
72	GO:0010207: photosystem II assembly	5.92E-03
73	GO:0048367: shoot system development	6.04E-03
74	GO:0006869: lipid transport	6.13E-03
75	GO:0070588: calcium ion transmembrane transport	6.41E-03
76	GO:0009969: xyloglucan biosynthetic process	6.41E-03
77	GO:0005985: sucrose metabolic process	6.41E-03
78	GO:0019762: glucosinolate catabolic process	6.91E-03
79	GO:0007010: cytoskeleton organization	7.42E-03
80	GO:0019953: sexual reproduction	7.95E-03
81	GO:0009768: photosynthesis, light harvesting in photosystem I	7.95E-03
82	GO:0016998: cell wall macromolecule catabolic process	8.49E-03
83	GO:0048278: vesicle docking	8.49E-03
84	GO:0030245: cellulose catabolic process	9.05E-03
85	GO:0006730: one-carbon metabolic process	9.05E-03
86	GO:0001944: vasculature development	9.62E-03
87	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	9.62E-03
88	GO:0009294: DNA mediated transformation	9.62E-03
89	GO:0010089: xylem development	1.02E-02
90	GO:0016117: carotenoid biosynthetic process	1.08E-02
91	GO:0000271: polysaccharide biosynthetic process	1.14E-02
92	GO:0010087: phloem or xylem histogenesis	1.14E-02
93	GO:0042335: cuticle development	1.14E-02
94	GO:0045489: pectin biosynthetic process	1.20E-02
95	GO:0010305: leaf vascular tissue pattern formation	1.20E-02
96	GO:0061025: membrane fusion	1.26E-02
97	GO:0006635: fatty acid beta-oxidation	1.39E-02
98	GO:0071554: cell wall organization or biogenesis	1.39E-02
99	GO:0007264: small GTPase mediated signal transduction	1.46E-02
100	GO:1901657: glycosyl compound metabolic process	1.53E-02
101	GO:0010090: trichome morphogenesis	1.53E-02
102	GO:0010027: thylakoid membrane organization	1.81E-02
103	GO:0009826: unidimensional cell growth	1.82E-02
104	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.88E-02
105	GO:0009658: chloroplast organization	1.89E-02
106	GO:0006906: vesicle fusion	1.96E-02
107	GO:0015995: chlorophyll biosynthetic process	2.03E-02
108	GO:0010411: xyloglucan metabolic process	2.03E-02
109	GO:0018298: protein-chromophore linkage	2.19E-02
110	GO:0048767: root hair elongation	2.26E-02
111	GO:0000160: phosphorelay signal transduction system	2.26E-02
112	GO:0009813: flavonoid biosynthetic process	2.26E-02
113	GO:0010311: lateral root formation	2.26E-02
114	GO:0010218: response to far red light	2.34E-02
115	GO:0009834: plant-type secondary cell wall biogenesis	2.34E-02
116	GO:0055114: oxidation-reduction process	2.40E-02
117	GO:0007568: aging	2.42E-02
118	GO:0048527: lateral root development	2.42E-02
119	GO:0010119: regulation of stomatal movement	2.42E-02
120	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.43E-02
121	GO:0009637: response to blue light	2.59E-02
122	GO:0016051: carbohydrate biosynthetic process	2.59E-02
123	GO:0006839: mitochondrial transport	2.84E-02
124	GO:0006887: exocytosis	2.93E-02
125	GO:0006631: fatty acid metabolic process	2.93E-02
126	GO:0010114: response to red light	3.10E-02
127	GO:0009744: response to sucrose	3.10E-02
128	GO:0051707: response to other organism	3.10E-02
129	GO:0042546: cell wall biogenesis	3.19E-02
130	GO:0009644: response to high light intensity	3.28E-02
131	GO:0008643: carbohydrate transport	3.28E-02
132	GO:0008152: metabolic process	3.81E-02
133	GO:0009809: lignin biosynthetic process	3.83E-02
134	GO:0006364: rRNA processing	3.83E-02
135	GO:0009736: cytokinin-activated signaling pathway	3.83E-02
136	GO:0051603: proteolysis involved in cellular protein catabolic process	3.93E-02
137	GO:0006096: glycolytic process	4.32E-02
138	GO:0042545: cell wall modification	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	0.00E+00
2	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
3	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
4	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
5	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
6	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
7	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
8	GO:0051920: peroxiredoxin activity	2.02E-09
9	GO:0016209: antioxidant activity	7.24E-09
10	GO:0051753: mannan synthase activity	5.62E-05
11	GO:0015088: copper uptake transmembrane transporter activity	1.42E-04
12	GO:0042349: guiding stereospecific synthesis activity	1.42E-04
13	GO:0008809: carnitine racemase activity	1.42E-04
14	GO:0004560: alpha-L-fucosidase activity	1.42E-04
15	GO:0004013: adenosylhomocysteinase activity	1.42E-04
16	GO:0008568: microtubule-severing ATPase activity	1.42E-04
17	GO:0004618: phosphoglycerate kinase activity	3.25E-04
18	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.25E-04
19	GO:0008967: phosphoglycolate phosphatase activity	3.25E-04
20	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	3.25E-04
21	GO:0070402: NADPH binding	5.33E-04
22	GO:0003979: UDP-glucose 6-dehydrogenase activity	5.33E-04
23	GO:0004148: dihydrolipoyl dehydrogenase activity	5.33E-04
24	GO:0005504: fatty acid binding	5.33E-04
25	GO:0004601: peroxidase activity	5.59E-04
26	GO:0030570: pectate lyase activity	7.35E-04
27	GO:0004165: dodecenoyl-CoA delta-isomerase activity	7.63E-04
28	GO:0045430: chalcone isomerase activity	1.01E-03
29	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	1.57E-03
30	GO:0016168: chlorophyll binding	1.84E-03
31	GO:0008289: lipid binding	2.29E-03
32	GO:0004033: aldo-keto reductase (NADP) activity	2.56E-03
33	GO:0052747: sinapyl alcohol dehydrogenase activity	2.56E-03
34	GO:0016788: hydrolase activity, acting on ester bonds	3.38E-03
35	GO:0005381: iron ion transmembrane transporter activity	3.71E-03
36	GO:0030234: enzyme regulator activity	4.12E-03
37	GO:0051287: NAD binding	4.45E-03
38	GO:0045551: cinnamyl-alcohol dehydrogenase activity	4.99E-03
39	GO:0008378: galactosyltransferase activity	4.99E-03
40	GO:0004089: carbonate dehydratase activity	5.45E-03
41	GO:0005262: calcium channel activity	5.45E-03
42	GO:0004565: beta-galactosidase activity	5.45E-03
43	GO:0030599: pectinesterase activity	6.62E-03
44	GO:0016757: transferase activity, transferring glycosyl groups	6.83E-03
45	GO:0031409: pigment binding	6.91E-03
46	GO:0004857: enzyme inhibitor activity	7.42E-03
47	GO:0033612: receptor serine/threonine kinase binding	8.49E-03
48	GO:0016758: transferase activity, transferring hexosyl groups	8.58E-03
49	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	9.05E-03
50	GO:0022891: substrate-specific transmembrane transporter activity	9.62E-03
51	GO:0008810: cellulase activity	9.62E-03
52	GO:0005102: receptor binding	1.08E-02
53	GO:0004872: receptor activity	1.33E-02
54	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.39E-02
55	GO:0000156: phosphorelay response regulator activity	1.53E-02
56	GO:0016759: cellulose synthase activity	1.60E-02
57	GO:0005200: structural constituent of cytoskeleton	1.67E-02
58	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.67E-02
59	GO:0016413: O-acetyltransferase activity	1.74E-02
60	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.03E-02
61	GO:0102483: scopolin beta-glucosidase activity	2.03E-02
62	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.09E-02
63	GO:0005507: copper ion binding	2.30E-02
64	GO:0030145: manganese ion binding	2.42E-02
65	GO:0050897: cobalt ion binding	2.42E-02
66	GO:0052689: carboxylic ester hydrolase activity	2.59E-02
67	GO:0003993: acid phosphatase activity	2.67E-02
68	GO:0000149: SNARE binding	2.76E-02
69	GO:0008422: beta-glucosidase activity	2.76E-02
70	GO:0042803: protein homodimerization activity	2.94E-02
71	GO:0004185: serine-type carboxypeptidase activity	3.10E-02
72	GO:0005484: SNAP receptor activity	3.10E-02
73	GO:0003924: GTPase activity	3.46E-02
74	GO:0009055: electron carrier activity	3.71E-02
75	GO:0045330: aspartyl esterase activity	4.12E-02
76	GO:0045735: nutrient reservoir activity	4.32E-02
77	GO:0004650: polygalacturonase activity	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0048046: apoplast	1.38E-13
3	GO:0009570: chloroplast stroma	7.16E-07
4	GO:0031225: anchored component of membrane	7.95E-07
5	GO:0046658: anchored component of plasma membrane	3.82E-06
6	GO:0010319: stromule	5.24E-06
7	GO:0009505: plant-type cell wall	5.70E-06
8	GO:0005618: cell wall	1.37E-05
9	GO:0009579: thylakoid	3.00E-05
10	GO:0009534: chloroplast thylakoid	3.08E-05
11	GO:0005576: extracellular region	4.33E-05
12	GO:0009535: chloroplast thylakoid membrane	4.82E-05
13	GO:0009507: chloroplast	2.10E-04
14	GO:0009941: chloroplast envelope	4.61E-04
15	GO:0009706: chloroplast inner membrane	9.61E-04
16	GO:0031897: Tic complex	1.01E-03
17	GO:0009533: chloroplast stromal thylakoid	2.21E-03
18	GO:0016020: membrane	2.83E-03
19	GO:0009539: photosystem II reaction center	2.93E-03
20	GO:0005886: plasma membrane	3.30E-03
21	GO:0005763: mitochondrial small ribosomal subunit	3.31E-03
22	GO:0000139: Golgi membrane	4.20E-03
23	GO:0005794: Golgi apparatus	5.89E-03
24	GO:0030076: light-harvesting complex	6.41E-03
25	GO:0005875: microtubule associated complex	6.91E-03
26	GO:0009654: photosystem II oxygen evolving complex	7.95E-03
27	GO:0010287: plastoglobule	8.35E-03
28	GO:0009522: photosystem I	1.26E-02
29	GO:0009523: photosystem II	1.33E-02
30	GO:0009504: cell plate	1.33E-02
31	GO:0005615: extracellular space	1.36E-02
32	GO:0016021: integral component of membrane	1.56E-02
33	GO:0031201: SNARE complex	2.93E-02
34	GO:0005856: cytoskeleton	3.37E-02
35	GO:0009506: plasmodesma	3.82E-02
36	GO:0005747: mitochondrial respiratory chain complex I	4.42E-02
37	GO:0012505: endomembrane system	4.82E-02