Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G11610

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0071311: cellular response to acetate0.00E+00
2GO:0071260: cellular response to mechanical stimulus0.00E+00
3GO:0045048: protein insertion into ER membrane0.00E+00
4GO:0043171: peptide catabolic process0.00E+00
5GO:0006480: N-terminal protein amino acid methylation0.00E+00
6GO:0030644: cellular chloride ion homeostasis0.00E+00
7GO:0010378: temperature compensation of the circadian clock0.00E+00
8GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
9GO:0009409: response to cold4.42E-06
10GO:0009768: photosynthesis, light harvesting in photosystem I6.33E-06
11GO:0009645: response to low light intensity stimulus6.35E-06
12GO:0009416: response to light stimulus1.61E-05
13GO:0000380: alternative mRNA splicing, via spliceosome1.05E-04
14GO:0018298: protein-chromophore linkage1.17E-04
15GO:0009769: photosynthesis, light harvesting in photosystem II2.70E-04
16GO:0009644: response to high light intensity3.10E-04
17GO:1990641: response to iron ion starvation3.24E-04
18GO:1902265: abscisic acid homeostasis3.24E-04
19GO:0015812: gamma-aminobutyric acid transport3.24E-04
20GO:0032958: inositol phosphate biosynthetic process3.24E-04
21GO:0010286: heat acclimation6.24E-04
22GO:0009641: shade avoidance6.91E-04
23GO:0009970: cellular response to sulfate starvation6.91E-04
24GO:0009257: 10-formyltetrahydrofolate biosynthetic process7.07E-04
25GO:0015914: phospholipid transport7.07E-04
26GO:0006611: protein export from nucleus7.07E-04
27GO:0006883: cellular sodium ion homeostasis7.07E-04
28GO:1902884: positive regulation of response to oxidative stress7.07E-04
29GO:0030259: lipid glycosylation7.07E-04
30GO:0006101: citrate metabolic process7.07E-04
31GO:0030003: cellular cation homeostasis7.07E-04
32GO:0006816: calcium ion transport7.96E-04
33GO:0048573: photoperiodism, flowering8.87E-04
34GO:0009817: defense response to fungus, incompatible interaction1.01E-03
35GO:0080167: response to karrikin1.07E-03
36GO:0010218: response to far red light1.14E-03
37GO:0000055: ribosomal large subunit export from nucleus1.15E-03
38GO:0042256: mature ribosome assembly1.15E-03
39GO:1902448: positive regulation of shade avoidance1.15E-03
40GO:0042344: indole glucosinolate catabolic process1.15E-03
41GO:0006954: inflammatory response1.15E-03
42GO:0071230: cellular response to amino acid stimulus1.15E-03
43GO:1901562: response to paraquat1.15E-03
44GO:0090630: activation of GTPase activity1.15E-03
45GO:0019438: aromatic compound biosynthetic process1.65E-03
46GO:0006624: vacuolar protein processing1.65E-03
47GO:0006020: inositol metabolic process1.65E-03
48GO:0010601: positive regulation of auxin biosynthetic process1.65E-03
49GO:0009113: purine nucleobase biosynthetic process1.65E-03
50GO:0015749: monosaccharide transport1.65E-03
51GO:1901332: negative regulation of lateral root development1.65E-03
52GO:0009963: positive regulation of flavonoid biosynthetic process1.65E-03
53GO:0007623: circadian rhythm1.73E-03
54GO:0006874: cellular calcium ion homeostasis1.76E-03
55GO:0042542: response to hydrogen peroxide1.77E-03
56GO:0035556: intracellular signal transduction1.80E-03
57GO:0006646: phosphatidylethanolamine biosynthetic process2.21E-03
58GO:0009687: abscisic acid metabolic process2.21E-03
59GO:0015743: malate transport2.21E-03
60GO:0009765: photosynthesis, light harvesting2.21E-03
61GO:1901002: positive regulation of response to salt stress2.21E-03
62GO:0030104: water homeostasis2.21E-03
63GO:0010600: regulation of auxin biosynthetic process2.21E-03
64GO:0071215: cellular response to abscisic acid stimulus2.30E-03
65GO:0007029: endoplasmic reticulum organization2.82E-03
66GO:0048578: positive regulation of long-day photoperiodism, flowering2.82E-03
67GO:0006656: phosphatidylcholine biosynthetic process2.82E-03
68GO:0043097: pyrimidine nucleoside salvage2.82E-03
69GO:0046323: glucose import3.16E-03
70GO:0006814: sodium ion transport3.39E-03
71GO:0048544: recognition of pollen3.39E-03
72GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation3.49E-03
73GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.49E-03
74GO:0042732: D-xylose metabolic process3.49E-03
75GO:0031053: primary miRNA processing3.49E-03
76GO:0006206: pyrimidine nucleobase metabolic process3.49E-03
77GO:0000741: karyogamy3.49E-03
78GO:0009737: response to abscisic acid3.87E-03
79GO:0006635: fatty acid beta-oxidation3.89E-03
80GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity4.20E-03
81GO:0010244: response to low fluence blue light stimulus by blue low-fluence system4.20E-03
82GO:0009861: jasmonic acid and ethylene-dependent systemic resistance4.20E-03
83GO:0010044: response to aluminum ion4.95E-03
84GO:0009395: phospholipid catabolic process4.95E-03
85GO:0048437: floral organ development4.95E-03
86GO:0006333: chromatin assembly or disassembly4.95E-03
87GO:0009396: folic acid-containing compound biosynthetic process4.95E-03
88GO:0044550: secondary metabolite biosynthetic process5.32E-03
89GO:0015979: photosynthesis5.74E-03
90GO:0006102: isocitrate metabolic process5.76E-03
91GO:0009061: anaerobic respiration5.76E-03
92GO:0010928: regulation of auxin mediated signaling pathway5.76E-03
93GO:0009819: drought recovery5.76E-03
94GO:0009415: response to water5.76E-03
95GO:0010078: maintenance of root meristem identity5.76E-03
96GO:0032508: DNA duplex unwinding5.76E-03
97GO:0009808: lignin metabolic process6.60E-03
98GO:0010099: regulation of photomorphogenesis6.60E-03
99GO:0009827: plant-type cell wall modification6.60E-03
100GO:0001510: RNA methylation6.60E-03
101GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay7.48E-03
102GO:0006098: pentose-phosphate shunt7.48E-03
103GO:0090333: regulation of stomatal closure7.48E-03
104GO:0046916: cellular transition metal ion homeostasis7.48E-03
105GO:0006811: ion transport8.11E-03
106GO:0035999: tetrahydrofolate interconversion8.41E-03
107GO:0030042: actin filament depolymerization8.41E-03
108GO:0048354: mucilage biosynthetic process involved in seed coat development8.41E-03
109GO:0008202: steroid metabolic process8.41E-03
110GO:0010043: response to zinc ion8.51E-03
111GO:0010228: vegetative to reproductive phase transition of meristem9.10E-03
112GO:0009637: response to blue light9.33E-03
113GO:0045087: innate immune response9.33E-03
114GO:0055062: phosphate ion homeostasis9.37E-03
115GO:0006535: cysteine biosynthetic process from serine9.37E-03
116GO:0006995: cellular response to nitrogen starvation9.37E-03
117GO:0006099: tricarboxylic acid cycle9.76E-03
118GO:0007165: signal transduction1.01E-02
119GO:0009682: induced systemic resistance1.04E-02
120GO:0052544: defense response by callose deposition in cell wall1.04E-02
121GO:0016485: protein processing1.04E-02
122GO:0009651: response to salt stress1.12E-02
123GO:0006820: anion transport1.14E-02
124GO:0016925: protein sumoylation1.14E-02
125GO:0009640: photomorphogenesis1.21E-02
126GO:0010114: response to red light1.21E-02
127GO:0050826: response to freezing1.25E-02
128GO:0009718: anthocyanin-containing compound biosynthetic process1.25E-02
129GO:2000012: regulation of auxin polar transport1.25E-02
130GO:0006807: nitrogen compound metabolic process1.25E-02
131GO:0008643: carbohydrate transport1.31E-02
132GO:0009266: response to temperature stimulus1.36E-02
133GO:0007034: vacuolar transport1.36E-02
134GO:0007015: actin filament organization1.36E-02
135GO:0000165: MAPK cascade1.46E-02
136GO:0019853: L-ascorbic acid biosynthetic process1.48E-02
137GO:0090351: seedling development1.48E-02
138GO:0010030: positive regulation of seed germination1.48E-02
139GO:0006468: protein phosphorylation1.59E-02
140GO:0034976: response to endoplasmic reticulum stress1.60E-02
141GO:0009585: red, far-red light phototransduction1.63E-02
142GO:0006970: response to osmotic stress1.65E-02
143GO:0051603: proteolysis involved in cellular protein catabolic process1.69E-02
144GO:0019344: cysteine biosynthetic process1.72E-02
145GO:0006406: mRNA export from nucleus1.72E-02
146GO:0006857: oligopeptide transport1.75E-02
147GO:0009735: response to cytokinin1.76E-02
148GO:0009909: regulation of flower development1.81E-02
149GO:0016575: histone deacetylation1.84E-02
150GO:0009695: jasmonic acid biosynthetic process1.84E-02
151GO:0009414: response to water deprivation1.90E-02
152GO:0048511: rhythmic process1.97E-02
153GO:0010431: seed maturation1.97E-02
154GO:0009269: response to desiccation1.97E-02
155GO:0003333: amino acid transmembrane transport1.97E-02
156GO:0019748: secondary metabolic process2.10E-02
157GO:0010017: red or far-red light signaling pathway2.10E-02
158GO:0035428: hexose transmembrane transport2.10E-02
159GO:0010227: floral organ abscission2.23E-02
160GO:0006012: galactose metabolic process2.23E-02
161GO:0009693: ethylene biosynthetic process2.23E-02
162GO:0019722: calcium-mediated signaling2.37E-02
163GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.51E-02
164GO:0070417: cellular response to cold2.51E-02
165GO:0051028: mRNA transport2.51E-02
166GO:0042631: cellular response to water deprivation2.65E-02
167GO:0080022: primary root development2.65E-02
168GO:0042391: regulation of membrane potential2.65E-02
169GO:0034220: ion transmembrane transport2.65E-02
170GO:0010501: RNA secondary structure unwinding2.65E-02
171GO:0000413: protein peptidyl-prolyl isomerization2.65E-02
172GO:0010051: xylem and phloem pattern formation2.65E-02
173GO:0006520: cellular amino acid metabolic process2.80E-02
174GO:0010197: polar nucleus fusion2.80E-02
175GO:0042752: regulation of circadian rhythm2.95E-02
176GO:0009646: response to absence of light2.95E-02
177GO:0006457: protein folding2.95E-02
178GO:0009058: biosynthetic process3.07E-02
179GO:0009556: microsporogenesis3.10E-02
180GO:0006623: protein targeting to vacuole3.10E-02
181GO:0008654: phospholipid biosynthetic process3.10E-02
182GO:0009408: response to heat3.20E-02
183GO:0019760: glucosinolate metabolic process3.73E-02
184GO:0010252: auxin homeostasis3.73E-02
185GO:0001666: response to hypoxia4.23E-02
186GO:0009911: positive regulation of flower development4.23E-02
187GO:0010029: regulation of seed germination4.40E-02
188GO:0015995: chlorophyll biosynthetic process4.75E-02
189GO:0006950: response to stress4.75E-02
190GO:0010468: regulation of gene expression4.77E-02
191GO:0009617: response to bacterium4.77E-02
192GO:0055114: oxidation-reduction process4.98E-02
RankGO TermAdjusted P value
1GO:0016428: tRNA (cytosine-5-)-methyltransferase activity0.00E+00
2GO:0050511: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity0.00E+00
3GO:0019912: cyclin-dependent protein kinase activating kinase activity0.00E+00
4GO:0005272: sodium channel activity0.00E+00
5GO:0047205: quinate O-hydroxycinnamoyltransferase activity0.00E+00
6GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
7GO:0010349: L-galactose dehydrogenase activity0.00E+00
8GO:0047172: shikimate O-hydroxycinnamoyltransferase activity0.00E+00
9GO:0047787: delta4-3-oxosteroid 5beta-reductase activity0.00E+00
10GO:0009045: xylose isomerase activity0.00E+00
11GO:0005358: high-affinity hydrogen:glucose symporter activity0.00E+00
12GO:0015276: ligand-gated ion channel activity0.00E+00
13GO:0031409: pigment binding4.00E-06
14GO:0016168: chlorophyll binding7.92E-05
15GO:0033857: diphosphoinositol-pentakisphosphate kinase activity3.24E-04
16GO:0009679: hexose:proton symporter activity3.24E-04
17GO:0035671: enone reductase activity3.24E-04
18GO:0000829: inositol heptakisphosphate kinase activity3.24E-04
19GO:0010013: N-1-naphthylphthalamic acid binding3.24E-04
20GO:0008692: 3-hydroxybutyryl-CoA epimerase activity3.24E-04
21GO:0046870: cadmium ion binding3.24E-04
22GO:0004112: cyclic-nucleotide phosphodiesterase activity3.24E-04
23GO:0070006: metalloaminopeptidase activity3.24E-04
24GO:0008066: glutamate receptor activity3.24E-04
25GO:0000828: inositol hexakisphosphate kinase activity3.24E-04
26GO:0015185: gamma-aminobutyric acid transmembrane transporter activity3.24E-04
27GO:0016301: kinase activity3.73E-04
28GO:0000989: transcription factor activity, transcription factor binding5.01E-04
29GO:0032791: lead ion binding7.07E-04
30GO:0004609: phosphatidylserine decarboxylase activity7.07E-04
31GO:0003994: aconitate hydratase activity7.07E-04
32GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity7.07E-04
33GO:0004477: methenyltetrahydrofolate cyclohydrolase activity7.07E-04
34GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity7.07E-04
35GO:0004839: ubiquitin activating enzyme activity7.07E-04
36GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity7.07E-04
37GO:0004329: formate-tetrahydrofolate ligase activity7.07E-04
38GO:0004352: glutamate dehydrogenase (NAD+) activity7.07E-04
39GO:0047209: coniferyl-alcohol glucosyltransferase activity7.07E-04
40GO:0015180: L-alanine transmembrane transporter activity7.07E-04
41GO:0004353: glutamate dehydrogenase [NAD(P)+] activity7.07E-04
42GO:0004177: aminopeptidase activity7.96E-04
43GO:0005262: calcium channel activity1.03E-03
44GO:0019948: SUMO activating enzyme activity1.15E-03
45GO:0017150: tRNA dihydrouridine synthase activity1.15E-03
46GO:0004096: catalase activity1.15E-03
47GO:0004175: endopeptidase activity1.16E-03
48GO:0050897: cobalt ion binding1.20E-03
49GO:0004970: ionotropic glutamate receptor activity1.29E-03
50GO:0005217: intracellular ligand-gated ion channel activity1.29E-03
51GO:0004300: enoyl-CoA hydratase activity1.65E-03
52GO:0009001: serine O-acetyltransferase activity1.65E-03
53GO:0015189: L-lysine transmembrane transporter activity1.65E-03
54GO:0048027: mRNA 5'-UTR binding1.65E-03
55GO:0004108: citrate (Si)-synthase activity1.65E-03
56GO:0030527: structural constituent of chromatin1.65E-03
57GO:0015181: arginine transmembrane transporter activity1.65E-03
58GO:0043023: ribosomal large subunit binding1.65E-03
59GO:0004165: dodecenoyl-CoA delta-isomerase activity1.65E-03
60GO:0005351: sugar:proton symporter activity1.67E-03
61GO:0019706: protein-cysteine S-palmitoyltransferase activity1.93E-03
62GO:0004707: MAP kinase activity1.93E-03
63GO:0004737: pyruvate decarboxylase activity2.21E-03
64GO:0008526: phosphatidylinositol transporter activity2.21E-03
65GO:0005313: L-glutamate transmembrane transporter activity2.21E-03
66GO:0005253: anion channel activity2.21E-03
67GO:0042277: peptide binding2.21E-03
68GO:0002020: protease binding2.82E-03
69GO:0010294: abscisic acid glucosyltransferase activity2.82E-03
70GO:0015145: monosaccharide transmembrane transporter activity2.82E-03
71GO:0008641: small protein activating enzyme activity2.82E-03
72GO:0045300: acyl-[acyl-carrier-protein] desaturase activity2.82E-03
73GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen2.82E-03
74GO:0030976: thiamine pyrophosphate binding3.49E-03
75GO:0004629: phospholipase C activity3.49E-03
76GO:0019137: thioglucosidase activity3.49E-03
77GO:0000293: ferric-chelate reductase activity3.49E-03
78GO:0004849: uridine kinase activity4.20E-03
79GO:0070300: phosphatidic acid binding4.20E-03
80GO:0004435: phosphatidylinositol phospholipase C activity4.20E-03
81GO:0005261: cation channel activity4.20E-03
82GO:0016831: carboxy-lyase activity4.95E-03
83GO:0015140: malate transmembrane transporter activity4.95E-03
84GO:0004525: ribonuclease III activity5.76E-03
85GO:0004033: aldo-keto reductase (NADP) activity5.76E-03
86GO:0005267: potassium channel activity6.60E-03
87GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)6.60E-03
88GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity6.60E-03
89GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen6.93E-03
90GO:0015144: carbohydrate transmembrane transporter activity7.16E-03
91GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity7.48E-03
92GO:0008270: zinc ion binding7.91E-03
93GO:0005215: transporter activity7.93E-03
94GO:0015297: antiporter activity8.09E-03
95GO:0008171: O-methyltransferase activity9.37E-03
96GO:0005515: protein binding1.03E-02
97GO:0004565: beta-galactosidase activity1.25E-02
98GO:0008081: phosphoric diester hydrolase activity1.25E-02
99GO:0005315: inorganic phosphate transmembrane transporter activity1.25E-02
100GO:0030552: cAMP binding1.48E-02
101GO:0030553: cGMP binding1.48E-02
102GO:0003712: transcription cofactor activity1.48E-02
103GO:0004407: histone deacetylase activity1.72E-02
104GO:0031625: ubiquitin protein ligase binding1.81E-02
105GO:0043424: protein histidine kinase binding1.84E-02
106GO:0005216: ion channel activity1.84E-02
107GO:0080043: quercetin 3-O-glucosyltransferase activity2.12E-02
108GO:0080044: quercetin 7-O-glucosyltransferase activity2.12E-02
109GO:0008514: organic anion transmembrane transporter activity2.37E-02
110GO:0003756: protein disulfide isomerase activity2.37E-02
111GO:0005249: voltage-gated potassium channel activity2.65E-02
112GO:0030551: cyclic nucleotide binding2.65E-02
113GO:0004674: protein serine/threonine kinase activity2.66E-02
114GO:0030276: clathrin binding2.80E-02
115GO:0005355: glucose transmembrane transporter activity2.95E-02
116GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.99E-02
117GO:0005507: copper ion binding3.39E-02
118GO:0019825: oxygen binding3.39E-02
119GO:0004197: cysteine-type endopeptidase activity3.41E-02
120GO:0000156: phosphorelay response regulator activity3.57E-02
121GO:0005524: ATP binding3.68E-02
122GO:0004672: protein kinase activity3.75E-02
123GO:0020037: heme binding4.22E-02
124GO:0008194: UDP-glycosyltransferase activity4.48E-02
125GO:0102483: scopolin beta-glucosidase activity4.75E-02
126GO:0030247: polysaccharide binding4.75E-02
127GO:0046872: metal ion binding4.85E-02
128GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.92E-02
RankGO TermAdjusted P value
1GO:0030076: light-harvesting complex3.11E-06
2GO:0005777: peroxisome3.83E-06
3GO:0005886: plasma membrane1.06E-05
4GO:0009522: photosystem I2.63E-05
5GO:0016021: integral component of membrane1.37E-04
6GO:0010287: plastoglobule1.60E-04
7GO:0009523: photosystem II4.13E-04
8GO:0005829: cytosol8.14E-04
9GO:0005773: vacuole9.77E-04
10GO:0000323: lytic vacuole1.65E-03
11GO:0016020: membrane1.79E-03
12GO:0010445: nuclear dicing body2.21E-03
13GO:0009898: cytoplasmic side of plasma membrane2.21E-03
14GO:0032586: protein storage vacuole membrane2.21E-03
15GO:0009517: PSII associated light-harvesting complex II2.21E-03
16GO:0005783: endoplasmic reticulum2.29E-03
17GO:0009579: thylakoid2.31E-03
18GO:0005851: eukaryotic translation initiation factor 2B complex3.49E-03
19GO:0000815: ESCRT III complex4.20E-03
20GO:0000326: protein storage vacuole6.60E-03
21GO:0031090: organelle membrane7.48E-03
22GO:0005884: actin filament1.04E-02
23GO:0031966: mitochondrial membrane1.52E-02
24GO:0009506: plasmodesma1.56E-02
25GO:0042651: thylakoid membrane1.84E-02
26GO:0016607: nuclear speck1.99E-02
27GO:0015629: actin cytoskeleton2.23E-02
28GO:0009941: chloroplast envelope2.40E-02
29GO:0030136: clathrin-coated vesicle2.51E-02
30GO:0009534: chloroplast thylakoid2.66E-02
31GO:0005770: late endosome2.80E-02
32GO:0005654: nucleoplasm2.83E-02
33GO:0009535: chloroplast thylakoid membrane3.04E-02
34GO:0031965: nuclear membrane3.10E-02
35GO:0000785: chromatin3.41E-02
36GO:0043231: intracellular membrane-bounded organelle3.61E-02
37GO:0009705: plant-type vacuole membrane4.01E-02
38GO:0009507: chloroplast4.47E-02
Gene type



Gene DE type