co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G11450

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0017038: protein import	0.00E+00
2	GO:0006399: tRNA metabolic process	0.00E+00
3	GO:0002184: cytoplasmic translational termination	0.00E+00
4	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
5	GO:0009658: chloroplast organization	2.34E-07
6	GO:0010027: thylakoid membrane organization	6.57E-07
7	GO:0090391: granum assembly	9.10E-07
8	GO:0015995: chlorophyll biosynthetic process	9.52E-07
9	GO:0006412: translation	2.48E-06
10	GO:1901259: chloroplast rRNA processing	1.57E-05
11	GO:0010196: nonphotochemical quenching	2.15E-05
12	GO:0048564: photosystem I assembly	2.83E-05
13	GO:0032544: plastid translation	3.64E-05
14	GO:0042371: vitamin K biosynthetic process	6.42E-05
15	GO:0034337: RNA folding	6.42E-05
16	GO:0018026: peptidyl-lysine monomethylation	1.55E-04
17	GO:0006568: tryptophan metabolic process	1.55E-04
18	GO:0010289: homogalacturonan biosynthetic process	1.55E-04
19	GO:0034755: iron ion transmembrane transport	1.55E-04
20	GO:0015979: photosynthesis	1.75E-04
21	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	2.63E-04
22	GO:2001141: regulation of RNA biosynthetic process	3.82E-04
23	GO:0010239: chloroplast mRNA processing	3.82E-04
24	GO:0009790: embryo development	4.07E-04
25	GO:0010109: regulation of photosynthesis	5.10E-04
26	GO:0006564: L-serine biosynthetic process	6.45E-04
27	GO:0010236: plastoquinone biosynthetic process	6.45E-04
28	GO:0045038: protein import into chloroplast thylakoid membrane	6.45E-04
29	GO:0009616: virus induced gene silencing	6.45E-04
30	GO:0042793: transcription from plastid promoter	7.90E-04
31	GO:0000470: maturation of LSU-rRNA	7.90E-04
32	GO:0042254: ribosome biogenesis	8.89E-04
33	GO:0042372: phylloquinone biosynthetic process	9.40E-04
34	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	9.40E-04
35	GO:0016246: RNA interference	9.40E-04
36	GO:0009772: photosynthetic electron transport in photosystem II	1.10E-03
37	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.10E-03
38	GO:0006605: protein targeting	1.26E-03
39	GO:0045292: mRNA cis splicing, via spliceosome	1.26E-03
40	GO:0006353: DNA-templated transcription, termination	1.26E-03
41	GO:0071482: cellular response to light stimulus	1.44E-03
42	GO:0000373: Group II intron splicing	1.62E-03
43	GO:0010267: production of ta-siRNAs involved in RNA interference	1.81E-03
44	GO:0006779: porphyrin-containing compound biosynthetic process	1.81E-03
45	GO:0030422: production of siRNA involved in RNA interference	2.01E-03
46	GO:0045036: protein targeting to chloroplast	2.01E-03
47	GO:0016441: posttranscriptional gene silencing	2.01E-03
48	GO:0006782: protoporphyrinogen IX biosynthetic process	2.01E-03
49	GO:0006879: cellular iron ion homeostasis	2.21E-03
50	GO:0006352: DNA-templated transcription, initiation	2.21E-03
51	GO:0045037: protein import into chloroplast stroma	2.42E-03
52	GO:0048467: gynoecium development	2.87E-03
53	GO:0048440: carpel development	2.87E-03
54	GO:0009735: response to cytokinin	3.38E-03
55	GO:0007017: microtubule-based process	3.82E-03
56	GO:0009451: RNA modification	4.30E-03
57	GO:0016117: carotenoid biosynthetic process	5.15E-03
58	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	5.15E-03
59	GO:0048544: recognition of pollen	6.01E-03
60	GO:0007018: microtubule-based movement	6.01E-03
61	GO:0009646: response to absence of light	6.01E-03
62	GO:0031047: gene silencing by RNA	6.92E-03
63	GO:0010090: trichome morphogenesis	7.24E-03
64	GO:0051607: defense response to virus	8.21E-03
65	GO:0009817: defense response to fungus, incompatible interaction	1.03E-02
66	GO:0006508: proteolysis	1.04E-02
67	GO:0016051: carbohydrate biosynthetic process	1.22E-02
68	GO:0009637: response to blue light	1.22E-02
69	GO:0030001: metal ion transport	1.33E-02
70	GO:0010114: response to red light	1.45E-02
71	GO:0051603: proteolysis involved in cellular protein catabolic process	1.84E-02
72	GO:0006970: response to osmotic stress	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0005048: signal sequence binding	0.00E+00
2	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
3	GO:0019843: rRNA binding	1.76E-15
4	GO:0016851: magnesium chelatase activity	2.92E-09
5	GO:0003735: structural constituent of ribosome	4.21E-07
6	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	6.42E-05
7	GO:0004425: indole-3-glycerol-phosphate synthase activity	6.42E-05
8	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.23E-04
9	GO:0004617: phosphoglycerate dehydrogenase activity	1.55E-04
10	GO:0005528: FK506 binding	1.75E-04
11	GO:0004176: ATP-dependent peptidase activity	2.16E-04
12	GO:0015462: ATPase-coupled protein transmembrane transporter activity	2.63E-04
13	GO:0043023: ribosomal large subunit binding	3.82E-04
14	GO:0008097: 5S rRNA binding	3.82E-04
15	GO:0004659: prenyltransferase activity	5.10E-04
16	GO:0016279: protein-lysine N-methyltransferase activity	5.10E-04
17	GO:0001053: plastid sigma factor activity	5.10E-04
18	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	5.10E-04
19	GO:0016987: sigma factor activity	5.10E-04
20	GO:0008237: metallopeptidase activity	5.65E-04
21	GO:0003968: RNA-directed 5'-3' RNA polymerase activity	7.90E-04
22	GO:0015631: tubulin binding	9.40E-04
23	GO:0003723: RNA binding	1.21E-03
24	GO:0008312: 7S RNA binding	1.26E-03
25	GO:0005381: iron ion transmembrane transporter activity	1.81E-03
26	GO:0008081: phosphoric diester hydrolase activity	2.64E-03
27	GO:0009982: pseudouridine synthase activity	2.64E-03
28	GO:0008266: poly(U) RNA binding	2.87E-03
29	GO:0016887: ATPase activity	3.19E-03
30	GO:0003887: DNA-directed DNA polymerase activity	3.33E-03
31	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	4.34E-03
32	GO:0008080: N-acetyltransferase activity	5.72E-03
33	GO:0005200: structural constituent of cytoskeleton	7.88E-03
34	GO:0008483: transaminase activity	7.88E-03
35	GO:0016597: amino acid binding	8.21E-03
36	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.03E-02
37	GO:0005215: transporter activity	1.05E-02
38	GO:0004222: metalloendopeptidase activity	1.10E-02
39	GO:0003924: GTPase activity	1.19E-02
40	GO:0004185: serine-type carboxypeptidase activity	1.45E-02
41	GO:0043621: protein self-association	1.54E-02
42	GO:0051287: NAD binding	1.66E-02
43	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.80E-02
44	GO:0003777: microtubule motor activity	1.93E-02
45	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.76E-02
46	GO:0030170: pyridoxal phosphate binding	2.92E-02
47	GO:0008565: protein transporter activity	3.08E-02
48	GO:0005525: GTP binding	3.48E-02
49	GO:0008017: microtubule binding	3.52E-02
50	GO:0005509: calcium ion binding	3.94E-02
51	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.04E-02
52	GO:0042802: identical protein binding	4.04E-02
53	GO:0008168: methyltransferase activity	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009570: chloroplast stroma	6.85E-30
3	GO:0009507: chloroplast	9.88E-28
4	GO:0009941: chloroplast envelope	1.19E-22
5	GO:0009579: thylakoid	8.60E-11
6	GO:0010007: magnesium chelatase complex	5.95E-10
7	GO:0031977: thylakoid lumen	9.43E-10
8	GO:0009534: chloroplast thylakoid	2.25E-09
9	GO:0009535: chloroplast thylakoid membrane	3.66E-09
10	GO:0009543: chloroplast thylakoid lumen	2.12E-08
11	GO:0005840: ribosome	2.70E-08
12	GO:0009547: plastid ribosome	6.42E-05
13	GO:0031969: chloroplast membrane	1.39E-04
14	GO:0080085: signal recognition particle, chloroplast targeting	1.55E-04
15	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.55E-04
16	GO:0009654: photosystem II oxygen evolving complex	1.95E-04
17	GO:0019898: extrinsic component of membrane	4.13E-04
18	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	1.44E-03
19	GO:0045298: tubulin complex	1.62E-03
20	GO:0000311: plastid large ribosomal subunit	2.42E-03
21	GO:0032040: small-subunit processome	2.42E-03
22	GO:0009706: chloroplast inner membrane	2.45E-03
23	GO:0009536: plastid	2.58E-03
24	GO:0009508: plastid chromosome	2.64E-03
25	GO:0000312: plastid small ribosomal subunit	2.87E-03
26	GO:0030095: chloroplast photosystem II	2.87E-03
27	GO:0005623: cell	3.14E-03
28	GO:0005871: kinesin complex	5.15E-03
29	GO:0016020: membrane	5.56E-03
30	GO:0009295: nucleoid	7.88E-03
31	GO:0009707: chloroplast outer membrane	1.03E-02
32	GO:0015934: large ribosomal subunit	1.14E-02
33	GO:0005622: intracellular	3.75E-02
34	GO:0046658: anchored component of plasma membrane	4.16E-02
35	GO:0022627: cytosolic small ribosomal subunit	4.16E-02