Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G11420

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
2GO:0090071: negative regulation of ribosome biogenesis0.00E+00
3GO:0016553: base conversion or substitution editing0.00E+00
4GO:0090627: plant epidermal cell differentiation0.00E+00
5GO:0015805: S-adenosyl-L-methionine transport0.00E+00
6GO:0033494: ferulate metabolic process0.00E+00
7GO:0042493: response to drug0.00E+00
8GO:0042371: vitamin K biosynthetic process0.00E+00
9GO:0006399: tRNA metabolic process0.00E+00
10GO:0015979: photosynthesis5.39E-10
11GO:0009735: response to cytokinin4.69E-08
12GO:0015995: chlorophyll biosynthetic process6.65E-08
13GO:0009773: photosynthetic electron transport in photosystem I6.97E-08
14GO:0032544: plastid translation7.51E-07
15GO:0042335: cuticle development3.32E-06
16GO:0010196: nonphotochemical quenching1.82E-05
17GO:0090391: granum assembly3.63E-05
18GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.04E-05
19GO:0010206: photosystem II repair5.15E-05
20GO:0042254: ribosome biogenesis1.16E-04
21GO:0016024: CDP-diacylglycerol biosynthetic process1.34E-04
22GO:0009828: plant-type cell wall loosening1.58E-04
23GO:0010207: photosystem II assembly1.94E-04
24GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.11E-04
25GO:0010027: thylakoid membrane organization2.15E-04
26GO:0006412: translation2.30E-04
27GO:0006636: unsaturated fatty acid biosynthetic process2.66E-04
28GO:0009913: epidermal cell differentiation2.93E-04
29GO:0006655: phosphatidylglycerol biosynthetic process2.93E-04
30GO:0016042: lipid catabolic process4.62E-04
31GO:0071588: hydrogen peroxide mediated signaling pathway4.92E-04
32GO:0043489: RNA stabilization4.92E-04
33GO:1904966: positive regulation of vitamin E biosynthetic process4.92E-04
34GO:1904964: positive regulation of phytol biosynthetic process4.92E-04
35GO:0042759: long-chain fatty acid biosynthetic process4.92E-04
36GO:0009772: photosynthetic electron transport in photosystem II5.03E-04
37GO:0009658: chloroplast organization5.42E-04
38GO:0006353: DNA-templated transcription, termination6.27E-04
39GO:0080167: response to karrikin8.35E-04
40GO:0009664: plant-type cell wall organization1.02E-03
41GO:0045490: pectin catabolic process1.03E-03
42GO:0010024: phytochromobilin biosynthetic process1.06E-03
43GO:0043255: regulation of carbohydrate biosynthetic process1.06E-03
44GO:0010115: regulation of abscisic acid biosynthetic process1.06E-03
45GO:1902326: positive regulation of chlorophyll biosynthetic process1.06E-03
46GO:0010541: acropetal auxin transport1.06E-03
47GO:0006898: receptor-mediated endocytosis1.06E-03
48GO:0001736: establishment of planar polarity1.06E-03
49GO:0010205: photoinhibition1.08E-03
50GO:0006949: syncytium formation1.25E-03
51GO:0006869: lipid transport1.43E-03
52GO:0015714: phosphoenolpyruvate transport1.73E-03
53GO:0006518: peptide metabolic process1.73E-03
54GO:0016045: detection of bacterium1.73E-03
55GO:0010359: regulation of anion channel activity1.73E-03
56GO:0015675: nickel cation transport1.73E-03
57GO:0006788: heme oxidation1.73E-03
58GO:0080055: low-affinity nitrate transport1.73E-03
59GO:0006013: mannose metabolic process1.73E-03
60GO:0010160: formation of animal organ boundary1.73E-03
61GO:0009627: systemic acquired resistance1.81E-03
62GO:0009826: unidimensional cell growth2.07E-03
63GO:0010143: cutin biosynthetic process2.13E-03
64GO:0051513: regulation of monopolar cell growth2.51E-03
65GO:0071484: cellular response to light intensity2.51E-03
66GO:0051639: actin filament network formation2.51E-03
67GO:0010239: chloroplast mRNA processing2.51E-03
68GO:0009650: UV protection2.51E-03
69GO:0080170: hydrogen peroxide transmembrane transport2.51E-03
70GO:0043481: anthocyanin accumulation in tissues in response to UV light2.51E-03
71GO:1901332: negative regulation of lateral root development2.51E-03
72GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.51E-03
73GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis2.51E-03
74GO:2001141: regulation of RNA biosynthetic process2.51E-03
75GO:0010025: wax biosynthetic process2.66E-03
76GO:0051017: actin filament bundle assembly2.95E-03
77GO:0051764: actin crosslink formation3.38E-03
78GO:0030104: water homeostasis3.38E-03
79GO:0045727: positive regulation of translation3.38E-03
80GO:0015713: phosphoglycerate transport3.38E-03
81GO:0031408: oxylipin biosynthetic process3.58E-03
82GO:0030245: cellulose catabolic process3.92E-03
83GO:0010114: response to red light4.14E-03
84GO:0010438: cellular response to sulfur starvation4.33E-03
85GO:0006564: L-serine biosynthetic process4.33E-03
86GO:0010236: plastoquinone biosynthetic process4.33E-03
87GO:0006461: protein complex assembly4.33E-03
88GO:0042549: photosystem II stabilization5.37E-03
89GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway5.37E-03
90GO:0000470: maturation of LSU-rRNA5.37E-03
91GO:0060918: auxin transport5.37E-03
92GO:0010337: regulation of salicylic acid metabolic process5.37E-03
93GO:0009759: indole glucosinolate biosynthetic process5.37E-03
94GO:0006561: proline biosynthetic process5.37E-03
95GO:0006751: glutathione catabolic process5.37E-03
96GO:0034220: ion transmembrane transport5.46E-03
97GO:0000413: protein peptidyl-prolyl isomerization5.46E-03
98GO:0009416: response to light stimulus5.63E-03
99GO:0009958: positive gravitropism5.89E-03
100GO:0042752: regulation of circadian rhythm6.34E-03
101GO:0042372: phylloquinone biosynthetic process6.48E-03
102GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.48E-03
103GO:0017148: negative regulation of translation6.48E-03
104GO:0006694: steroid biosynthetic process6.48E-03
105GO:1901259: chloroplast rRNA processing6.48E-03
106GO:0010019: chloroplast-nucleus signaling pathway6.48E-03
107GO:0000302: response to reactive oxygen species7.28E-03
108GO:0009395: phospholipid catabolic process7.66E-03
109GO:1900057: positive regulation of leaf senescence7.66E-03
110GO:0010444: guard mother cell differentiation7.66E-03
111GO:0006400: tRNA modification7.66E-03
112GO:0048564: photosystem I assembly8.92E-03
113GO:0045292: mRNA cis splicing, via spliceosome8.92E-03
114GO:0030091: protein repair8.92E-03
115GO:0008610: lipid biosynthetic process8.92E-03
116GO:0006605: protein targeting8.92E-03
117GO:0042255: ribosome assembly8.92E-03
118GO:0031540: regulation of anthocyanin biosynthetic process8.92E-03
119GO:0009624: response to nematode9.51E-03
120GO:0071482: cellular response to light stimulus1.03E-02
121GO:0009742: brassinosteroid mediated signaling pathway1.03E-02
122GO:0009657: plastid organization1.03E-02
123GO:0009808: lignin metabolic process1.03E-02
124GO:0009245: lipid A biosynthetic process1.17E-02
125GO:0034765: regulation of ion transmembrane transport1.17E-02
126GO:0009734: auxin-activated signaling pathway1.17E-02
127GO:0000373: Group II intron splicing1.17E-02
128GO:0009638: phototropism1.31E-02
129GO:0006535: cysteine biosynthetic process from serine1.46E-02
130GO:0006032: chitin catabolic process1.46E-02
131GO:0010311: lateral root formation1.46E-02
132GO:0009688: abscisic acid biosynthetic process1.46E-02
133GO:0048829: root cap development1.46E-02
134GO:0042744: hydrogen peroxide catabolic process1.50E-02
135GO:0009631: cold acclimation1.60E-02
136GO:0010015: root morphogenesis1.62E-02
137GO:0000038: very long-chain fatty acid metabolic process1.62E-02
138GO:0052544: defense response by callose deposition in cell wall1.62E-02
139GO:0006352: DNA-templated transcription, initiation1.62E-02
140GO:0009750: response to fructose1.62E-02
141GO:0018119: peptidyl-cysteine S-nitrosylation1.62E-02
142GO:0048765: root hair cell differentiation1.62E-02
143GO:0006633: fatty acid biosynthetic process1.70E-02
144GO:0009637: response to blue light1.76E-02
145GO:0008361: regulation of cell size1.79E-02
146GO:0002213: defense response to insect1.79E-02
147GO:0034599: cellular response to oxidative stress1.84E-02
148GO:2000012: regulation of auxin polar transport1.96E-02
149GO:0010628: positive regulation of gene expression1.96E-02
150GO:0010102: lateral root morphogenesis1.96E-02
151GO:0009785: blue light signaling pathway1.96E-02
152GO:0006006: glucose metabolic process1.96E-02
153GO:0010229: inflorescence development1.96E-02
154GO:0009718: anthocyanin-containing compound biosynthetic process1.96E-02
155GO:0009451: RNA modification1.97E-02
156GO:0005975: carbohydrate metabolic process1.97E-02
157GO:0030001: metal ion transport2.01E-02
158GO:0032259: methylation2.05E-02
159GO:0010540: basipetal auxin transport2.13E-02
160GO:0048467: gynoecium development2.13E-02
161GO:0019253: reductive pentose-phosphate cycle2.13E-02
162GO:0007166: cell surface receptor signaling pathway2.26E-02
163GO:0009926: auxin polar transport2.27E-02
164GO:0009825: multidimensional cell growth2.31E-02
165GO:0010167: response to nitrate2.31E-02
166GO:0071732: cellular response to nitric oxide2.31E-02
167GO:0010030: positive regulation of seed germination2.31E-02
168GO:0010053: root epidermal cell differentiation2.31E-02
169GO:0006833: water transport2.50E-02
170GO:0000162: tryptophan biosynthetic process2.50E-02
171GO:0042023: DNA endoreduplication2.50E-02
172GO:0019344: cysteine biosynthetic process2.69E-02
173GO:0000027: ribosomal large subunit assembly2.69E-02
174GO:0055114: oxidation-reduction process2.73E-02
175GO:0009733: response to auxin2.73E-02
176GO:0019953: sexual reproduction2.89E-02
177GO:0009695: jasmonic acid biosynthetic process2.89E-02
178GO:0007017: microtubule-based process2.89E-02
179GO:0009809: lignin biosynthetic process3.06E-02
180GO:0006364: rRNA processing3.06E-02
181GO:0048511: rhythmic process3.09E-02
182GO:0003333: amino acid transmembrane transport3.09E-02
183GO:0016998: cell wall macromolecule catabolic process3.09E-02
184GO:0010017: red or far-red light signaling pathway3.29E-02
185GO:0009411: response to UV3.50E-02
186GO:0071369: cellular response to ethylene stimulus3.50E-02
187GO:0048443: stamen development3.72E-02
188GO:0042127: regulation of cell proliferation3.72E-02
189GO:0006284: base-excision repair3.72E-02
190GO:0019722: calcium-mediated signaling3.72E-02
191GO:0009306: protein secretion3.72E-02
192GO:0009409: response to cold3.85E-02
193GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.94E-02
194GO:0006468: protein phosphorylation4.05E-02
195GO:0042631: cellular response to water deprivation4.16E-02
196GO:0080022: primary root development4.16E-02
197GO:0042391: regulation of membrane potential4.16E-02
198GO:0008033: tRNA processing4.16E-02
199GO:0009741: response to brassinosteroid4.39E-02
200GO:0010182: sugar mediated signaling pathway4.39E-02
201GO:0006810: transport4.46E-02
202GO:0015986: ATP synthesis coupled proton transport4.62E-02
203GO:0048825: cotyledon development4.85E-02
RankGO TermAdjusted P value
1GO:0050614: delta24-sterol reductase activity0.00E+00
2GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
3GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
4GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
5GO:0010301: xanthoxin dehydrogenase activity0.00E+00
6GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
7GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
8GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
9GO:0047661: amino-acid racemase activity0.00E+00
10GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
11GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
12GO:0019843: rRNA binding4.50E-13
13GO:0016851: magnesium chelatase activity5.60E-07
14GO:0005528: FK506 binding5.92E-07
15GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.02E-06
16GO:0016788: hydrolase activity, acting on ester bonds1.96E-06
17GO:0003735: structural constituent of ribosome2.75E-05
18GO:0030570: pectate lyase activity4.04E-05
19GO:0052689: carboxylic ester hydrolase activity4.67E-05
20GO:0008266: poly(U) RNA binding1.94E-04
21GO:0004130: cytochrome-c peroxidase activity2.93E-04
22GO:0004366: glycerol-3-phosphate O-acyltransferase activity2.93E-04
23GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity4.92E-04
24GO:0030794: (S)-coclaurine-N-methyltransferase activity4.92E-04
25GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity4.92E-04
26GO:0015121: phosphoenolpyruvate:phosphate antiporter activity4.92E-04
27GO:0004321: fatty-acyl-CoA synthase activity4.92E-04
28GO:0019210: kinase inhibitor activity4.92E-04
29GO:0005080: protein kinase C binding4.92E-04
30GO:0045485: omega-6 fatty acid desaturase activity4.92E-04
31GO:0016829: lyase activity6.68E-04
32GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water7.64E-04
33GO:0003839: gamma-glutamylcyclotransferase activity1.06E-03
34GO:0004617: phosphoglycerate dehydrogenase activity1.06E-03
35GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.06E-03
36GO:0016630: protochlorophyllide reductase activity1.06E-03
37GO:0015099: nickel cation transmembrane transporter activity1.06E-03
38GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity1.06E-03
39GO:0042389: omega-3 fatty acid desaturase activity1.06E-03
40GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.73E-03
41GO:0080054: low-affinity nitrate transmembrane transporter activity1.73E-03
42GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.73E-03
43GO:0090729: toxin activity1.73E-03
44GO:0050734: hydroxycinnamoyltransferase activity1.73E-03
45GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.73E-03
46GO:0004565: beta-galactosidase activity1.88E-03
47GO:0016746: transferase activity, transferring acyl groups2.04E-03
48GO:0001872: (1->3)-beta-D-glucan binding2.51E-03
49GO:0043023: ribosomal large subunit binding2.51E-03
50GO:0001053: plastid sigma factor activity3.38E-03
51GO:0010011: auxin binding3.38E-03
52GO:0016987: sigma factor activity3.38E-03
53GO:0010328: auxin influx transmembrane transporter activity3.38E-03
54GO:0052793: pectin acetylesterase activity3.38E-03
55GO:0004392: heme oxygenase (decyclizing) activity3.38E-03
56GO:0043495: protein anchor3.38E-03
57GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity3.38E-03
58GO:0015120: phosphoglycerate transmembrane transporter activity3.38E-03
59GO:0004659: prenyltransferase activity3.38E-03
60GO:0008289: lipid binding3.48E-03
61GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.06E-03
62GO:0008810: cellulase activity4.28E-03
63GO:0008725: DNA-3-methyladenine glycosylase activity4.33E-03
64GO:0003959: NADPH dehydrogenase activity4.33E-03
65GO:0004040: amidase activity4.33E-03
66GO:0031177: phosphopantetheine binding5.37E-03
67GO:0016688: L-ascorbate peroxidase activity5.37E-03
68GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity5.37E-03
69GO:0016491: oxidoreductase activity5.55E-03
70GO:0004124: cysteine synthase activity6.48E-03
71GO:0051920: peroxiredoxin activity6.48E-03
72GO:0033743: peptide-methionine (R)-S-oxide reductase activity6.48E-03
73GO:0000035: acyl binding6.48E-03
74GO:0016832: aldehyde-lyase activity6.48E-03
75GO:0004723: calcium-dependent protein serine/threonine phosphatase activity6.48E-03
76GO:0004559: alpha-mannosidase activity6.48E-03
77GO:0005242: inward rectifier potassium channel activity6.48E-03
78GO:0019899: enzyme binding7.66E-03
79GO:0051015: actin filament binding8.31E-03
80GO:0016209: antioxidant activity8.92E-03
81GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process8.92E-03
82GO:0052747: sinapyl alcohol dehydrogenase activity8.92E-03
83GO:0043022: ribosome binding8.92E-03
84GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds9.68E-03
85GO:0015250: water channel activity1.06E-02
86GO:0016207: 4-coumarate-CoA ligase activity1.17E-02
87GO:0030247: polysaccharide binding1.25E-02
88GO:0047617: acyl-CoA hydrolase activity1.31E-02
89GO:0008236: serine-type peptidase activity1.32E-02
90GO:0004252: serine-type endopeptidase activity1.45E-02
91GO:0004568: chitinase activity1.46E-02
92GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.60E-02
93GO:0008378: galactosyltransferase activity1.79E-02
94GO:0045551: cinnamyl-alcohol dehydrogenase activity1.79E-02
95GO:0003993: acid phosphatase activity1.84E-02
96GO:0004022: alcohol dehydrogenase (NAD) activity1.96E-02
97GO:0010329: auxin efflux transmembrane transporter activity1.96E-02
98GO:0031072: heat shock protein binding1.96E-02
99GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.50E-02
100GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.50E-02
101GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.50E-02
102GO:0042626: ATPase activity, coupled to transmembrane movement of substances2.58E-02
103GO:0042802: identical protein binding2.58E-02
104GO:0051287: NAD binding2.75E-02
105GO:0004176: ATP-dependent peptidase activity3.09E-02
106GO:0008168: methyltransferase activity3.15E-02
107GO:0003690: double-stranded DNA binding3.17E-02
108GO:0004601: peroxidase activity3.30E-02
109GO:0022891: substrate-specific transmembrane transporter activity3.50E-02
110GO:0003756: protein disulfide isomerase activity3.72E-02
111GO:0003727: single-stranded RNA binding3.72E-02
112GO:0004650: polygalacturonase activity3.98E-02
113GO:0030551: cyclic nucleotide binding4.16E-02
114GO:0005249: voltage-gated potassium channel activity4.16E-02
115GO:0008080: N-acetyltransferase activity4.39E-02
116GO:0046933: proton-transporting ATP synthase activity, rotational mechanism4.39E-02
117GO:0050662: coenzyme binding4.62E-02
118GO:0005509: calcium ion binding4.91E-02
RankGO TermAdjusted P value
1GO:0009515: granal stacked thylakoid0.00E+00
2GO:0044391: ribosomal subunit0.00E+00
3GO:0009507: chloroplast1.19E-28
4GO:0009579: thylakoid4.33E-24
5GO:0009535: chloroplast thylakoid membrane6.06E-24
6GO:0009570: chloroplast stroma3.02E-23
7GO:0009534: chloroplast thylakoid9.28E-23
8GO:0009543: chloroplast thylakoid lumen1.95E-20
9GO:0009941: chloroplast envelope6.46E-20
10GO:0031977: thylakoid lumen6.34E-16
11GO:0005840: ribosome1.77E-08
12GO:0010007: magnesium chelatase complex1.17E-07
13GO:0030095: chloroplast photosystem II9.08E-06
14GO:0048046: apoplast1.13E-05
15GO:0009654: photosystem II oxygen evolving complex2.30E-05
16GO:0005576: extracellular region4.05E-05
17GO:0009505: plant-type cell wall5.60E-05
18GO:0019898: extrinsic component of membrane9.86E-05
19GO:0016020: membrane1.11E-04
20GO:0005618: cell wall1.93E-04
21GO:0031969: chloroplast membrane1.94E-04
22GO:0043674: columella4.92E-04
23GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex4.92E-04
24GO:0009547: plastid ribosome4.92E-04
25GO:0009533: chloroplast stromal thylakoid5.03E-04
26GO:0005886: plasma membrane5.05E-04
27GO:0009523: photosystem II9.06E-04
28GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)9.13E-04
29GO:0008180: COP9 signalosome9.13E-04
30GO:0030093: chloroplast photosystem I1.06E-03
31GO:0009509: chromoplast1.73E-03
32GO:0015630: microtubule cytoskeleton2.51E-03
33GO:0032432: actin filament bundle2.51E-03
34GO:0042651: thylakoid membrane3.26E-03
35GO:0031225: anchored component of membrane4.63E-03
36GO:0009536: plastid4.69E-03
37GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)5.37E-03
38GO:0046658: anchored component of plasma membrane6.93E-03
39GO:0042807: central vacuole7.66E-03
40GO:0009986: cell surface7.66E-03
41GO:0010319: stromule9.40E-03
42GO:0009295: nucleoid9.40E-03
43GO:0019005: SCF ubiquitin ligase complex1.38E-02
44GO:0090404: pollen tube tip1.62E-02
45GO:0005884: actin filament1.62E-02
46GO:0000311: plastid large ribosomal subunit1.79E-02
47GO:0005578: proteinaceous extracellular matrix1.96E-02
48GO:0009508: plastid chromosome1.96E-02
49GO:0000312: plastid small ribosomal subunit2.13E-02
50GO:0000502: proteasome complex3.06E-02
51GO:0015629: actin cytoskeleton3.50E-02
52GO:0009706: chloroplast inner membrane4.35E-02
Gene type



Gene DE type