co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G10690

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:0034337: RNA folding	0.00E+00
3	GO:0002184: cytoplasmic translational termination	0.00E+00
4	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
5	GO:0090470: shoot organ boundary specification	0.00E+00
6	GO:0061635: regulation of protein complex stability	0.00E+00
7	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
8	GO:0006642: triglyceride mobilization	0.00E+00
9	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
10	GO:0017038: protein import	0.00E+00
11	GO:0016553: base conversion or substitution editing	0.00E+00
12	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
13	GO:0009658: chloroplast organization	1.04E-10
14	GO:0010027: thylakoid membrane organization	8.17E-09
15	GO:0015979: photosynthesis	2.12E-07
16	GO:0042549: photosystem II stabilization	4.70E-07
17	GO:0015995: chlorophyll biosynthetic process	5.90E-07
18	GO:0032544: plastid translation	3.04E-06
19	GO:0071482: cellular response to light stimulus	3.04E-06
20	GO:0010207: photosystem II assembly	1.97E-05
21	GO:0006412: translation	3.34E-05
22	GO:0045038: protein import into chloroplast thylakoid membrane	3.81E-05
23	GO:1901259: chloroplast rRNA processing	7.89E-05
24	GO:0009772: photosynthetic electron transport in photosystem II	1.05E-04
25	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.05E-04
26	GO:0010196: nonphotochemical quenching	1.05E-04
27	GO:0006605: protein targeting	1.35E-04
28	GO:0048564: photosystem I assembly	1.35E-04
29	GO:0006353: DNA-templated transcription, termination	1.35E-04
30	GO:0000481: maturation of 5S rRNA	1.75E-04
31	GO:0042371: vitamin K biosynthetic process	1.75E-04
32	GO:0046166: glyceraldehyde-3-phosphate biosynthetic process	1.75E-04
33	GO:0043489: RNA stabilization	1.75E-04
34	GO:0006352: DNA-templated transcription, initiation	3.36E-04
35	GO:0018026: peptidyl-lysine monomethylation	3.96E-04
36	GO:0001736: establishment of planar polarity	3.96E-04
37	GO:0006568: tryptophan metabolic process	3.96E-04
38	GO:0010270: photosystem II oxygen evolving complex assembly	3.96E-04
39	GO:0034755: iron ion transmembrane transport	3.96E-04
40	GO:0009451: RNA modification	4.69E-04
41	GO:0032504: multicellular organism reproduction	6.47E-04
42	GO:0010581: regulation of starch biosynthetic process	6.47E-04
43	GO:0090391: granum assembly	6.47E-04
44	GO:0019563: glycerol catabolic process	6.47E-04
45	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	6.47E-04
46	GO:0006518: peptide metabolic process	6.47E-04
47	GO:0042254: ribosome biogenesis	9.04E-04
48	GO:2001141: regulation of RNA biosynthetic process	9.23E-04
49	GO:0010371: regulation of gibberellin biosynthetic process	9.23E-04
50	GO:0009152: purine ribonucleotide biosynthetic process	9.23E-04
51	GO:0046653: tetrahydrofolate metabolic process	9.23E-04
52	GO:0010239: chloroplast mRNA processing	9.23E-04
53	GO:0019048: modulation by virus of host morphology or physiology	9.23E-04
54	GO:0009052: pentose-phosphate shunt, non-oxidative branch	9.23E-04
55	GO:0031048: chromatin silencing by small RNA	9.23E-04
56	GO:0016556: mRNA modification	9.23E-04
57	GO:0009735: response to cytokinin	1.04E-03
58	GO:0071483: cellular response to blue light	1.22E-03
59	GO:0010021: amylopectin biosynthetic process	1.22E-03
60	GO:0010109: regulation of photosynthesis	1.22E-03
61	GO:0015994: chlorophyll metabolic process	1.22E-03
62	GO:0051567: histone H3-K9 methylation	1.22E-03
63	GO:0006021: inositol biosynthetic process	1.22E-03
64	GO:0006564: L-serine biosynthetic process	1.56E-03
65	GO:0010236: plastoquinone biosynthetic process	1.56E-03
66	GO:0048497: maintenance of floral organ identity	1.56E-03
67	GO:0009793: embryo development ending in seed dormancy	1.81E-03
68	GO:0016458: gene silencing	1.91E-03
69	GO:0000470: maturation of LSU-rRNA	1.91E-03
70	GO:0006828: manganese ion transport	1.91E-03
71	GO:0009913: epidermal cell differentiation	1.91E-03
72	GO:0042793: transcription from plastid promoter	1.91E-03
73	GO:0009099: valine biosynthetic process	2.30E-03
74	GO:0042372: phylloquinone biosynthetic process	2.30E-03
75	GO:0009082: branched-chain amino acid biosynthetic process	2.30E-03
76	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.30E-03
77	GO:0006400: tRNA modification	2.70E-03
78	GO:0032508: DNA duplex unwinding	3.13E-03
79	GO:0000105: histidine biosynthetic process	3.13E-03
80	GO:0045292: mRNA cis splicing, via spliceosome	3.13E-03
81	GO:0042255: ribosome assembly	3.13E-03
82	GO:0006508: proteolysis	3.36E-03
83	GO:0009097: isoleucine biosynthetic process	3.58E-03
84	GO:0019430: removal of superoxide radicals	3.58E-03
85	GO:0000373: Group II intron splicing	4.05E-03
86	GO:0010206: photosystem II repair	4.05E-03
87	GO:0009098: leucine biosynthetic process	4.54E-03
88	GO:0010380: regulation of chlorophyll biosynthetic process	4.54E-03
89	GO:0030422: production of siRNA involved in RNA interference	5.05E-03
90	GO:0048829: root cap development	5.05E-03
91	GO:0006879: cellular iron ion homeostasis	5.58E-03
92	GO:0048765: root hair cell differentiation	5.58E-03
93	GO:0006816: calcium ion transport	5.58E-03
94	GO:0009773: photosynthetic electron transport in photosystem I	5.58E-03
95	GO:0008285: negative regulation of cell proliferation	5.58E-03
96	GO:0006415: translational termination	5.58E-03
97	GO:0009073: aromatic amino acid family biosynthetic process	5.58E-03
98	GO:0043085: positive regulation of catalytic activity	5.58E-03
99	GO:0006790: sulfur compound metabolic process	6.13E-03
100	GO:0006094: gluconeogenesis	6.70E-03
101	GO:0010628: positive regulation of gene expression	6.70E-03
102	GO:0010020: chloroplast fission	7.28E-03
103	GO:0019253: reductive pentose-phosphate cycle	7.28E-03
104	GO:0006457: protein folding	7.74E-03
105	GO:0090351: seedling development	7.89E-03
106	GO:0046854: phosphatidylinositol phosphorylation	7.89E-03
107	GO:0010073: meristem maintenance	9.80E-03
108	GO:0006418: tRNA aminoacylation for protein translation	9.80E-03
109	GO:0003333: amino acid transmembrane transport	1.05E-02
110	GO:0006306: DNA methylation	1.05E-02
111	GO:0035428: hexose transmembrane transport	1.12E-02
112	GO:0010227: floral organ abscission	1.19E-02
113	GO:0009790: embryo development	1.39E-02
114	GO:0080022: primary root development	1.41E-02
115	GO:0008033: tRNA processing	1.41E-02
116	GO:0000413: protein peptidyl-prolyl isomerization	1.41E-02
117	GO:0046323: glucose import	1.49E-02
118	GO:0006342: chromatin silencing	1.49E-02
119	GO:0009958: positive gravitropism	1.49E-02
120	GO:0007018: microtubule-based movement	1.56E-02
121	GO:0006814: sodium ion transport	1.56E-02
122	GO:0009646: response to absence of light	1.56E-02
123	GO:0019252: starch biosynthetic process	1.64E-02
124	GO:0048825: cotyledon development	1.64E-02
125	GO:0032502: developmental process	1.81E-02
126	GO:0030163: protein catabolic process	1.89E-02
127	GO:0010090: trichome morphogenesis	1.89E-02
128	GO:0071805: potassium ion transmembrane transport	2.06E-02
129	GO:0051607: defense response to virus	2.15E-02
130	GO:0009816: defense response to bacterium, incompatible interaction	2.33E-02
131	GO:0042128: nitrate assimilation	2.42E-02
132	GO:0009817: defense response to fungus, incompatible interaction	2.71E-02
133	GO:0048481: plant ovule development	2.71E-02
134	GO:0010311: lateral root formation	2.80E-02
135	GO:0009631: cold acclimation	3.00E-02
136	GO:0006865: amino acid transport	3.10E-02
137	GO:0009637: response to blue light	3.20E-02
138	GO:0009853: photorespiration	3.20E-02
139	GO:0045087: innate immune response	3.20E-02
140	GO:0006839: mitochondrial transport	3.52E-02
141	GO:0030001: metal ion transport	3.52E-02
142	GO:0045454: cell redox homeostasis	3.78E-02
143	GO:0010114: response to red light	3.84E-02
144	GO:0009926: auxin polar transport	3.84E-02
145	GO:0009640: photomorphogenesis	3.84E-02
146	GO:0006855: drug transmembrane transport	4.28E-02
147	GO:0032259: methylation	4.46E-02
148	GO:0006629: lipid metabolic process	4.65E-02
149	GO:0006364: rRNA processing	4.74E-02
150	GO:0006813: potassium ion transport	4.74E-02
151	GO:0051603: proteolysis involved in cellular protein catabolic process	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0046408: chlorophyll synthetase activity	0.00E+00
2	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
3	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
4	GO:0005048: signal sequence binding	0.00E+00
5	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
6	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
7	GO:0004401: histidinol-phosphatase activity	0.00E+00
8	GO:0019843: rRNA binding	1.20E-15
9	GO:0016851: magnesium chelatase activity	3.57E-08
10	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.60E-07
11	GO:0003723: RNA binding	1.05E-05
12	GO:0003735: structural constituent of ribosome	1.67E-05
13	GO:0001053: plastid sigma factor activity	2.35E-05
14	GO:0016987: sigma factor activity	2.35E-05
15	GO:0005528: FK506 binding	3.40E-05
16	GO:0010347: L-galactose-1-phosphate phosphatase activity	1.75E-04
17	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	1.75E-04
18	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.75E-04
19	GO:0004807: triose-phosphate isomerase activity	1.75E-04
20	GO:0008237: metallopeptidase activity	1.96E-04
21	GO:0004222: metalloendopeptidase activity	3.74E-04
22	GO:0047746: chlorophyllase activity	3.96E-04
23	GO:0004617: phosphoglycerate dehydrogenase activity	3.96E-04
24	GO:0052832: inositol monophosphate 3-phosphatase activity	3.96E-04
25	GO:0033201: alpha-1,4-glucan synthase activity	3.96E-04
26	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	3.96E-04
27	GO:0008934: inositol monophosphate 1-phosphatase activity	3.96E-04
28	GO:0052833: inositol monophosphate 4-phosphatase activity	3.96E-04
29	GO:0016630: protochlorophyllide reductase activity	3.96E-04
30	GO:0008266: poly(U) RNA binding	4.96E-04
31	GO:0004751: ribose-5-phosphate isomerase activity	6.47E-04
32	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	6.47E-04
33	GO:0008864: formyltetrahydrofolate deformylase activity	6.47E-04
34	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	6.47E-04
35	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	6.47E-04
36	GO:0015462: ATPase-coupled protein transmembrane transporter activity	6.47E-04
37	GO:0004373: glycogen (starch) synthase activity	6.47E-04
38	GO:0002161: aminoacyl-tRNA editing activity	6.47E-04
39	GO:0003729: mRNA binding	6.91E-04
40	GO:0004176: ATP-dependent peptidase activity	8.23E-04
41	GO:0052656: L-isoleucine transaminase activity	9.23E-04
42	GO:0043023: ribosomal large subunit binding	9.23E-04
43	GO:0052654: L-leucine transaminase activity	9.23E-04
44	GO:0008097: 5S rRNA binding	9.23E-04
45	GO:0008508: bile acid:sodium symporter activity	9.23E-04
46	GO:0052655: L-valine transaminase activity	9.23E-04
47	GO:0035197: siRNA binding	9.23E-04
48	GO:0016149: translation release factor activity, codon specific	9.23E-04
49	GO:0004659: prenyltransferase activity	1.22E-03
50	GO:0016279: protein-lysine N-methyltransferase activity	1.22E-03
51	GO:0010011: auxin binding	1.22E-03
52	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.22E-03
53	GO:0010328: auxin influx transmembrane transporter activity	1.22E-03
54	GO:0004084: branched-chain-amino-acid transaminase activity	1.22E-03
55	GO:0009011: starch synthase activity	1.22E-03
56	GO:0005215: transporter activity	1.35E-03
57	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.56E-03
58	GO:0003959: NADPH dehydrogenase activity	1.56E-03
59	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.30E-03
60	GO:0008236: serine-type peptidase activity	2.89E-03
61	GO:0043022: ribosome binding	3.13E-03
62	GO:0008312: 7S RNA binding	3.13E-03
63	GO:0004033: aldo-keto reductase (NADP) activity	3.13E-03
64	GO:0003747: translation release factor activity	4.05E-03
65	GO:0016887: ATPase activity	4.26E-03
66	GO:0047617: acyl-CoA hydrolase activity	4.54E-03
67	GO:0005381: iron ion transmembrane transporter activity	4.54E-03
68	GO:0005384: manganese ion transmembrane transporter activity	4.54E-03
69	GO:0008047: enzyme activator activity	5.05E-03
70	GO:0043621: protein self-association	5.35E-03
71	GO:0004521: endoribonuclease activity	6.13E-03
72	GO:0000049: tRNA binding	6.13E-03
73	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	6.66E-03
74	GO:0015095: magnesium ion transmembrane transporter activity	6.70E-03
75	GO:0031072: heat shock protein binding	6.70E-03
76	GO:0009982: pseudouridine synthase activity	6.70E-03
77	GO:0008081: phosphoric diester hydrolase activity	6.70E-03
78	GO:0004022: alcohol dehydrogenase (NAD) activity	6.70E-03
79	GO:0015079: potassium ion transmembrane transporter activity	9.80E-03
80	GO:0005525: GTP binding	1.11E-02
81	GO:0004519: endonuclease activity	1.16E-02
82	GO:0003727: single-stranded RNA binding	1.26E-02
83	GO:0004812: aminoacyl-tRNA ligase activity	1.33E-02
84	GO:0005509: calcium ion binding	1.35E-02
85	GO:0008080: N-acetyltransferase activity	1.49E-02
86	GO:0004791: thioredoxin-disulfide reductase activity	1.56E-02
87	GO:0005355: glucose transmembrane transporter activity	1.56E-02
88	GO:0016787: hydrolase activity	1.57E-02
89	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.89E-02
90	GO:0016597: amino acid binding	2.15E-02
91	GO:0008168: methyltransferase activity	2.46E-02
92	GO:0004721: phosphoprotein phosphatase activity	2.52E-02
93	GO:0016788: hydrolase activity, acting on ester bonds	2.60E-02
94	GO:0015238: drug transmembrane transporter activity	2.80E-02
95	GO:0051539: 4 iron, 4 sulfur cluster binding	3.52E-02
96	GO:0004185: serine-type carboxypeptidase activity	3.84E-02
97	GO:0051537: 2 iron, 2 sulfur cluster binding	4.06E-02
98	GO:0015293: symporter activity	4.17E-02
99	GO:0005198: structural molecule activity	4.17E-02
100	GO:0051287: NAD binding	4.39E-02
101	GO:0003924: GTPase activity	4.65E-02
102	GO:0003690: double-stranded DNA binding	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.71E-63
2	GO:0009570: chloroplast stroma	9.69E-40
3	GO:0009941: chloroplast envelope	1.64E-27
4	GO:0009535: chloroplast thylakoid membrane	1.61E-21
5	GO:0009579: thylakoid	7.52E-21
6	GO:0031977: thylakoid lumen	1.96E-16
7	GO:0009543: chloroplast thylakoid lumen	1.20E-15
8	GO:0009534: chloroplast thylakoid	3.28E-15
9	GO:0031969: chloroplast membrane	6.60E-09
10	GO:0010007: magnesium chelatase complex	7.33E-09
11	GO:0005840: ribosome	9.52E-09
12	GO:0009654: photosystem II oxygen evolving complex	9.19E-07
13	GO:0019898: extrinsic component of membrane	4.89E-06
14	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	1.69E-04
15	GO:0009515: granal stacked thylakoid	1.75E-04
16	GO:0009547: plastid ribosome	1.75E-04
17	GO:0032040: small-subunit processome	3.86E-04
18	GO:0080085: signal recognition particle, chloroplast targeting	3.96E-04
19	GO:0000427: plastid-encoded plastid RNA polymerase complex	3.96E-04
20	GO:0042651: thylakoid membrane	7.52E-04
21	GO:0005719: nuclear euchromatin	9.23E-04
22	GO:0030529: intracellular ribonucleoprotein complex	2.34E-03
23	GO:0009986: cell surface	2.70E-03
24	GO:0009533: chloroplast stromal thylakoid	2.70E-03
25	GO:0009501: amyloplast	3.13E-03
26	GO:0015030: Cajal body	4.54E-03
27	GO:0009536: plastid	5.99E-03
28	GO:0000311: plastid large ribosomal subunit	6.13E-03
29	GO:0009508: plastid chromosome	6.70E-03
30	GO:0000312: plastid small ribosomal subunit	7.28E-03
31	GO:0030095: chloroplast photosystem II	7.28E-03
32	GO:0016020: membrane	8.42E-03
33	GO:0043231: intracellular membrane-bounded organelle	1.18E-02
34	GO:0005871: kinesin complex	1.33E-02
35	GO:0009523: photosystem II	1.64E-02
36	GO:0009295: nucleoid	2.06E-02
37	GO:0015934: large ribosomal subunit	3.00E-02