Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G09995

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0002184: cytoplasmic translational termination0.00E+00
2GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
3GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
4GO:0016553: base conversion or substitution editing0.00E+00
5GO:0042407: cristae formation0.00E+00
6GO:0015805: S-adenosyl-L-methionine transport0.00E+00
7GO:0007638: mechanosensory behavior0.00E+00
8GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
9GO:0006399: tRNA metabolic process0.00E+00
10GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
11GO:0070125: mitochondrial translational elongation0.00E+00
12GO:0006412: translation2.84E-20
13GO:0032544: plastid translation1.36E-16
14GO:0042254: ribosome biogenesis1.81E-12
15GO:0009658: chloroplast organization6.15E-10
16GO:0009735: response to cytokinin1.82E-07
17GO:0010207: photosystem II assembly2.63E-06
18GO:0015979: photosynthesis7.28E-06
19GO:0051085: chaperone mediated protein folding requiring cofactor3.96E-05
20GO:0006457: protein folding4.79E-05
21GO:0010190: cytochrome b6f complex assembly1.60E-04
22GO:0042549: photosystem II stabilization1.60E-04
23GO:0061077: chaperone-mediated protein folding1.83E-04
24GO:0042026: protein refolding2.18E-04
25GO:0016117: carotenoid biosynthetic process2.95E-04
26GO:0000413: protein peptidyl-prolyl isomerization3.28E-04
27GO:0071588: hydrogen peroxide mediated signaling pathway3.34E-04
28GO:0043489: RNA stabilization3.34E-04
29GO:1904966: positive regulation of vitamin E biosynthetic process3.34E-04
30GO:1904964: positive regulation of phytol biosynthetic process3.34E-04
31GO:0042371: vitamin K biosynthetic process3.34E-04
32GO:0045454: cell redox homeostasis3.69E-04
33GO:0009657: plastid organization4.36E-04
34GO:1900865: chloroplast RNA modification6.19E-04
35GO:0042742: defense response to bacterium7.13E-04
36GO:0010270: photosystem II oxygen evolving complex assembly7.29E-04
37GO:0010424: DNA methylation on cytosine within a CG sequence7.29E-04
38GO:0043039: tRNA aminoacylation7.29E-04
39GO:1902326: positive regulation of chlorophyll biosynthetic process7.29E-04
40GO:0010069: zygote asymmetric cytokinesis in embryo sac7.29E-04
41GO:0006423: cysteinyl-tRNA aminoacylation7.29E-04
42GO:0010027: thylakoid membrane organization7.65E-04
43GO:0006816: calcium ion transport8.32E-04
44GO:0043085: positive regulation of catalytic activity8.32E-04
45GO:0006415: translational termination8.32E-04
46GO:0018119: peptidyl-cysteine S-nitrosylation8.32E-04
47GO:0018298: protein-chromophore linkage1.06E-03
48GO:0010581: regulation of starch biosynthetic process1.18E-03
49GO:0071492: cellular response to UV-A1.18E-03
50GO:0006696: ergosterol biosynthetic process1.18E-03
51GO:0010020: chloroplast fission1.21E-03
52GO:0009790: embryo development1.44E-03
53GO:0009409: response to cold1.47E-03
54GO:0007231: osmosensory signaling pathway1.70E-03
55GO:0006241: CTP biosynthetic process1.70E-03
56GO:0019048: modulation by virus of host morphology or physiology1.70E-03
57GO:0006424: glutamyl-tRNA aminoacylation1.70E-03
58GO:0006165: nucleoside diphosphate phosphorylation1.70E-03
59GO:0006228: UTP biosynthetic process1.70E-03
60GO:0031048: chromatin silencing by small RNA1.70E-03
61GO:0016556: mRNA modification1.70E-03
62GO:0043572: plastid fission1.70E-03
63GO:0006986: response to unfolded protein1.70E-03
64GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.70E-03
65GO:2001141: regulation of RNA biosynthetic process1.70E-03
66GO:0006418: tRNA aminoacylation for protein translation1.84E-03
67GO:0009793: embryo development ending in seed dormancy1.91E-03
68GO:0071486: cellular response to high light intensity2.28E-03
69GO:0009765: photosynthesis, light harvesting2.28E-03
70GO:0006183: GTP biosynthetic process2.28E-03
71GO:0033500: carbohydrate homeostasis2.28E-03
72GO:0006021: inositol biosynthetic process2.28E-03
73GO:0051567: histone H3-K9 methylation2.28E-03
74GO:0016123: xanthophyll biosynthetic process2.91E-03
75GO:0048359: mucilage metabolic process involved in seed coat development2.91E-03
76GO:0032543: mitochondrial translation2.91E-03
77GO:0016120: carotene biosynthetic process2.91E-03
78GO:0006564: L-serine biosynthetic process2.91E-03
79GO:0031365: N-terminal protein amino acid modification2.91E-03
80GO:0042335: cuticle development3.06E-03
81GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.60E-03
82GO:0000470: maturation of LSU-rRNA3.60E-03
83GO:0016554: cytidine to uridine editing3.60E-03
84GO:0006655: phosphatidylglycerol biosynthetic process3.60E-03
85GO:0006796: phosphate-containing compound metabolic process3.60E-03
86GO:0006828: manganese ion transport3.60E-03
87GO:0032973: amino acid export3.60E-03
88GO:0016458: gene silencing3.60E-03
89GO:0009955: adaxial/abaxial pattern specification4.33E-03
90GO:0042372: phylloquinone biosynthetic process4.33E-03
91GO:0006458: 'de novo' protein folding4.33E-03
92GO:1901259: chloroplast rRNA processing4.33E-03
93GO:0009854: oxidative photosynthetic carbon pathway4.33E-03
94GO:0010019: chloroplast-nucleus signaling pathway4.33E-03
95GO:0010555: response to mannitol4.33E-03
96GO:0043090: amino acid import5.11E-03
97GO:0006810: transport5.27E-03
98GO:0009642: response to light intensity5.94E-03
99GO:0000105: histidine biosynthetic process5.94E-03
100GO:0071482: cellular response to light stimulus6.81E-03
101GO:0019430: removal of superoxide radicals6.81E-03
102GO:0015995: chlorophyll biosynthetic process6.94E-03
103GO:0009817: defense response to fungus, incompatible interaction7.70E-03
104GO:0010206: photosystem II repair7.73E-03
105GO:0080144: amino acid homeostasis7.73E-03
106GO:0006783: heme biosynthetic process7.73E-03
107GO:0015780: nucleotide-sugar transport7.73E-03
108GO:0043067: regulation of programmed cell death8.68E-03
109GO:0006779: porphyrin-containing compound biosynthetic process8.68E-03
110GO:0006349: regulation of gene expression by genetic imprinting8.68E-03
111GO:0010380: regulation of chlorophyll biosynthetic process8.68E-03
112GO:0009631: cold acclimation8.91E-03
113GO:0055085: transmembrane transport9.57E-03
114GO:0006949: syncytium formation9.69E-03
115GO:0006782: protoporphyrinogen IX biosynthetic process9.69E-03
116GO:0030422: production of siRNA involved in RNA interference9.69E-03
117GO:0045036: protein targeting to chloroplast9.69E-03
118GO:0009853: photorespiration9.77E-03
119GO:0009637: response to blue light9.77E-03
120GO:0034599: cellular response to oxidative stress1.02E-02
121GO:0009773: photosynthetic electron transport in photosystem I1.07E-02
122GO:0009073: aromatic amino acid family biosynthetic process1.07E-02
123GO:0006352: DNA-templated transcription, initiation1.07E-02
124GO:0010216: maintenance of DNA methylation1.07E-02
125GO:0006839: mitochondrial transport1.12E-02
126GO:0006631: fatty acid metabolic process1.16E-02
127GO:0006790: sulfur compound metabolic process1.18E-02
128GO:0016024: CDP-diacylglycerol biosynthetic process1.18E-02
129GO:0045037: protein import into chloroplast stroma1.18E-02
130GO:0010114: response to red light1.26E-02
131GO:0090351: seedling development1.53E-02
132GO:0070588: calcium ion transmembrane transport1.53E-02
133GO:0046854: phosphatidylinositol phosphorylation1.53E-02
134GO:0019344: cysteine biosynthetic process1.77E-02
135GO:0000027: ribosomal large subunit assembly1.77E-02
136GO:0007010: cytoskeleton organization1.77E-02
137GO:0009768: photosynthesis, light harvesting in photosystem I1.90E-02
138GO:0007017: microtubule-based process1.90E-02
139GO:0006306: DNA methylation2.03E-02
140GO:0016226: iron-sulfur cluster assembly2.17E-02
141GO:0006730: one-carbon metabolic process2.17E-02
142GO:0007005: mitochondrion organization2.17E-02
143GO:0080092: regulation of pollen tube growth2.17E-02
144GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.31E-02
145GO:0009294: DNA mediated transformation2.31E-02
146GO:0009411: response to UV2.31E-02
147GO:0019722: calcium-mediated signaling2.45E-02
148GO:0006396: RNA processing2.51E-02
149GO:0006662: glycerol ether metabolic process2.89E-02
150GO:0010197: polar nucleus fusion2.89E-02
151GO:0006342: chromatin silencing2.89E-02
152GO:0007018: microtubule-based movement3.05E-02
153GO:0008654: phospholipid biosynthetic process3.20E-02
154GO:0080156: mitochondrial mRNA modification3.36E-02
155GO:0000302: response to reactive oxygen species3.36E-02
156GO:0042744: hydrogen peroxide catabolic process3.47E-02
157GO:0016032: viral process3.52E-02
158GO:0006633: fatty acid biosynthetic process3.82E-02
159GO:0009828: plant-type cell wall loosening3.85E-02
160GO:0006413: translational initiation3.91E-02
161GO:0071805: potassium ion transmembrane transport4.02E-02
162GO:0007267: cell-cell signaling4.02E-02
163GO:0051607: defense response to virus4.19E-02
164GO:0046686: response to cadmium ion4.45E-02
165GO:0009816: defense response to bacterium, incompatible interaction4.54E-02
166GO:0009627: systemic acquired resistance4.72E-02
167GO:0042128: nitrate assimilation4.72E-02
RankGO TermAdjusted P value
1GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
2GO:0052834: inositol monophosphate phosphatase activity0.00E+00
3GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
4GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
5GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
6GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
7GO:0008887: glycerate kinase activity0.00E+00
8GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
9GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
10GO:0045435: lycopene epsilon cyclase activity0.00E+00
11GO:0004822: isoleucine-tRNA ligase activity0.00E+00
12GO:0004401: histidinol-phosphatase activity0.00E+00
13GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
14GO:0046905: phytoene synthase activity0.00E+00
15GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
16GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
17GO:0019843: rRNA binding2.19E-24
18GO:0003735: structural constituent of ribosome7.01E-23
19GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.84E-10
20GO:0051920: peroxiredoxin activity3.40E-08
21GO:0016209: antioxidant activity1.21E-07
22GO:0005528: FK506 binding5.58E-06
23GO:0016149: translation release factor activity, codon specific3.96E-05
24GO:0051082: unfolded protein binding1.23E-04
25GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity3.34E-04
26GO:0004831: tyrosine-tRNA ligase activity3.34E-04
27GO:0004655: porphobilinogen synthase activity3.34E-04
28GO:0003867: 4-aminobutyrate transaminase activity3.34E-04
29GO:0051996: squalene synthase activity3.34E-04
30GO:0010347: L-galactose-1-phosphate phosphatase activity3.34E-04
31GO:0003747: translation release factor activity5.24E-04
32GO:0003723: RNA binding6.81E-04
33GO:0008047: enzyme activator activity7.22E-04
34GO:0004617: phosphoglycerate dehydrogenase activity7.29E-04
35GO:0052832: inositol monophosphate 3-phosphatase activity7.29E-04
36GO:0004817: cysteine-tRNA ligase activity7.29E-04
37GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity7.29E-04
38GO:0008934: inositol monophosphate 1-phosphatase activity7.29E-04
39GO:0052833: inositol monophosphate 4-phosphatase activity7.29E-04
40GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity7.29E-04
41GO:0004310: farnesyl-diphosphate farnesyltransferase activity7.29E-04
42GO:0004326: tetrahydrofolylpolyglutamate synthase activity7.29E-04
43GO:0004601: peroxidase activity8.00E-04
44GO:0016168: chlorophyll binding8.20E-04
45GO:0044183: protein binding involved in protein folding8.32E-04
46GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.18E-03
47GO:0003913: DNA photolyase activity1.18E-03
48GO:0005504: fatty acid binding1.18E-03
49GO:0002161: aminoacyl-tRNA editing activity1.18E-03
50GO:0004148: dihydrolipoyl dehydrogenase activity1.18E-03
51GO:0030267: glyoxylate reductase (NADP) activity1.18E-03
52GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.18E-03
53GO:0008266: poly(U) RNA binding1.21E-03
54GO:0035197: siRNA binding1.70E-03
55GO:0004550: nucleoside diphosphate kinase activity1.70E-03
56GO:0043023: ribosomal large subunit binding1.70E-03
57GO:0008097: 5S rRNA binding1.70E-03
58GO:0003729: mRNA binding1.84E-03
59GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed2.28E-03
60GO:0016987: sigma factor activity2.28E-03
61GO:0045430: chalcone isomerase activity2.28E-03
62GO:0043495: protein anchor2.28E-03
63GO:0001053: plastid sigma factor activity2.28E-03
64GO:0022891: substrate-specific transmembrane transporter activity2.41E-03
65GO:0004812: aminoacyl-tRNA ligase activity2.84E-03
66GO:0016773: phosphotransferase activity, alcohol group as acceptor2.91E-03
67GO:0004040: amidase activity2.91E-03
68GO:0004791: thioredoxin-disulfide reductase activity3.55E-03
69GO:0004605: phosphatidate cytidylyltransferase activity3.60E-03
70GO:0004130: cytochrome-c peroxidase activity3.60E-03
71GO:0016208: AMP binding3.60E-03
72GO:0016462: pyrophosphatase activity3.60E-03
73GO:0016688: L-ascorbate peroxidase activity3.60E-03
74GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.33E-03
75GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.33E-03
76GO:0102391: decanoate--CoA ligase activity4.33E-03
77GO:0003886: DNA (cytosine-5-)-methyltransferase activity4.33E-03
78GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.33E-03
79GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.64E-03
80GO:0016831: carboxy-lyase activity5.11E-03
81GO:0008235: metalloexopeptidase activity5.11E-03
82GO:0004427: inorganic diphosphatase activity5.11E-03
83GO:0009881: photoreceptor activity5.11E-03
84GO:0019899: enzyme binding5.11E-03
85GO:0004467: long-chain fatty acid-CoA ligase activity5.11E-03
86GO:0008237: metallopeptidase activity5.25E-03
87GO:0004033: aldo-keto reductase (NADP) activity5.94E-03
88GO:0008236: serine-type peptidase activity7.32E-03
89GO:0004222: metalloendopeptidase activity8.49E-03
90GO:0005384: manganese ion transmembrane transporter activity8.68E-03
91GO:0047617: acyl-CoA hydrolase activity8.68E-03
92GO:0003746: translation elongation factor activity9.77E-03
93GO:0005089: Rho guanyl-nucleotide exchange factor activity1.07E-02
94GO:0004177: aminopeptidase activity1.07E-02
95GO:0004521: endoribonuclease activity1.18E-02
96GO:0000049: tRNA binding1.18E-02
97GO:0008081: phosphoric diester hydrolase activity1.29E-02
98GO:0015095: magnesium ion transmembrane transporter activity1.29E-02
99GO:0031072: heat shock protein binding1.29E-02
100GO:0005262: calcium channel activity1.29E-02
101GO:0051537: 2 iron, 2 sulfur cluster binding1.37E-02
102GO:0000287: magnesium ion binding1.55E-02
103GO:0031409: pigment binding1.65E-02
104GO:0051536: iron-sulfur cluster binding1.77E-02
105GO:0051087: chaperone binding1.90E-02
106GO:0015079: potassium ion transmembrane transporter activity1.90E-02
107GO:0004176: ATP-dependent peptidase activity2.03E-02
108GO:0008514: organic anion transmembrane transporter activity2.45E-02
109GO:0047134: protein-disulfide reductase activity2.60E-02
110GO:0008080: N-acetyltransferase activity2.89E-02
111GO:0003924: GTPase activity3.39E-02
112GO:0009055: electron carrier activity3.70E-02
113GO:0004519: endonuclease activity3.76E-02
114GO:0005200: structural constituent of cytoskeleton4.02E-02
115GO:0016597: amino acid binding4.19E-02
116GO:0008017: microtubule binding4.39E-02
117GO:0003743: translation initiation factor activity4.89E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
3GO:0044391: ribosomal subunit0.00E+00
4GO:0009507: chloroplast9.11E-86
5GO:0009570: chloroplast stroma1.66E-65
6GO:0009941: chloroplast envelope6.64E-53
7GO:0009579: thylakoid2.33E-33
8GO:0009535: chloroplast thylakoid membrane1.09E-30
9GO:0005840: ribosome1.79E-25
10GO:0009543: chloroplast thylakoid lumen2.21E-19
11GO:0031977: thylakoid lumen3.68E-14
12GO:0009536: plastid8.57E-10
13GO:0009534: chloroplast thylakoid7.90E-08
14GO:0031969: chloroplast membrane4.50E-06
15GO:0009654: photosystem II oxygen evolving complex6.97E-06
16GO:0000311: plastid large ribosomal subunit5.68E-05
17GO:0015934: large ribosomal subunit1.63E-04
18GO:0009547: plastid ribosome3.34E-04
19GO:0009523: photosystem II4.37E-04
20GO:0019898: extrinsic component of membrane4.37E-04
21GO:0046658: anchored component of plasma membrane6.06E-04
22GO:0010319: stromule6.60E-04
23GO:0009706: chloroplast inner membrane8.13E-04
24GO:0005874: microtubule1.09E-03
25GO:0030095: chloroplast photosystem II1.21E-03
26GO:0005875: microtubule associated complex1.50E-03
27GO:0022626: cytosolic ribosome1.62E-03
28GO:0005719: nuclear euchromatin1.70E-03
29GO:0042651: thylakoid membrane1.84E-03
30GO:0015935: small ribosomal subunit2.02E-03
31GO:0009532: plastid stroma2.02E-03
32GO:0016020: membrane2.23E-03
33GO:0009533: chloroplast stromal thylakoid5.11E-03
34GO:0005778: peroxisomal membrane5.25E-03
35GO:0022625: cytosolic large ribosomal subunit5.43E-03
36GO:0010287: plastoglobule5.63E-03
37GO:0030529: intracellular ribonucleoprotein complex5.89E-03
38GO:0048046: apoplast6.07E-03
39GO:0009539: photosystem II reaction center6.81E-03
40GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.73E-03
41GO:0045298: tubulin complex7.73E-03
42GO:0005763: mitochondrial small ribosomal subunit7.73E-03
43GO:0005759: mitochondrial matrix8.07E-03
44GO:0015030: Cajal body8.68E-03
45GO:0016324: apical plasma membrane9.69E-03
46GO:0009505: plant-type cell wall1.11E-02
47GO:0031012: extracellular matrix1.29E-02
48GO:0000312: plastid small ribosomal subunit1.41E-02
49GO:0030076: light-harvesting complex1.53E-02
50GO:0005871: kinesin complex2.60E-02
51GO:0009522: photosystem I3.05E-02
52GO:0005743: mitochondrial inner membrane3.10E-02
53GO:0005623: cell3.13E-02
54GO:0009295: nucleoid4.02E-02
55GO:0031225: anchored component of membrane4.13E-02
Gene type



Gene DE type