co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G08050

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0042371: vitamin K biosynthetic process	0.00E+00
3	GO:1905499: trichome papilla formation	0.00E+00
4	GO:0006399: tRNA metabolic process	0.00E+00
5	GO:0002184: cytoplasmic translational termination	0.00E+00
6	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
7	GO:0061635: regulation of protein complex stability	0.00E+00
8	GO:0016553: base conversion or substitution editing	0.00E+00
9	GO:0032544: plastid translation	1.29E-11
10	GO:0006412: translation	1.30E-10
11	GO:0015979: photosynthesis	3.72E-10
12	GO:0042254: ribosome biogenesis	1.57E-08
13	GO:0009773: photosynthetic electron transport in photosystem I	1.72E-08
14	GO:0009735: response to cytokinin	2.32E-06
15	GO:0010207: photosystem II assembly	3.04E-06
16	GO:0015995: chlorophyll biosynthetic process	1.18E-04
17	GO:0010236: plastoquinone biosynthetic process	1.19E-04
18	GO:0009658: chloroplast organization	1.80E-04
19	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.57E-04
20	GO:0009772: photosynthetic electron transport in photosystem II	3.02E-04
21	GO:0010196: nonphotochemical quenching	3.02E-04
22	GO:1904964: positive regulation of phytol biosynthetic process	3.50E-04
23	GO:0071588: hydrogen peroxide mediated signaling pathway	3.50E-04
24	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	3.50E-04
25	GO:0043489: RNA stabilization	3.50E-04
26	GO:0071277: cellular response to calcium ion	3.50E-04
27	GO:1904966: positive regulation of vitamin E biosynthetic process	3.50E-04
28	GO:0042335: cuticle development	3.58E-04
29	GO:0048564: photosystem I assembly	3.80E-04
30	GO:0006353: DNA-templated transcription, termination	3.80E-04
31	GO:0010205: photoinhibition	6.60E-04
32	GO:0009828: plant-type cell wall loosening	6.65E-04
33	GO:0001736: establishment of planar polarity	7.62E-04
34	GO:0010024: phytochromobilin biosynthetic process	7.62E-04
35	GO:1902326: positive regulation of chlorophyll biosynthetic process	7.62E-04
36	GO:0034755: iron ion transmembrane transport	7.62E-04
37	GO:0006949: syncytium formation	7.69E-04
38	GO:0010027: thylakoid membrane organization	8.31E-04
39	GO:0016024: CDP-diacylglycerol biosynthetic process	1.01E-03
40	GO:0018298: protein-chromophore linkage	1.16E-03
41	GO:0015714: phosphoenolpyruvate transport	1.23E-03
42	GO:0006788: heme oxidation	1.23E-03
43	GO:0006954: inflammatory response	1.23E-03
44	GO:0090391: granum assembly	1.23E-03
45	GO:0006636: unsaturated fatty acid biosynthetic process	1.60E-03
46	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.78E-03
47	GO:2001141: regulation of RNA biosynthetic process	1.78E-03
48	GO:0071484: cellular response to light intensity	1.78E-03
49	GO:0009152: purine ribonucleotide biosynthetic process	1.78E-03
50	GO:0046653: tetrahydrofolate metabolic process	1.78E-03
51	GO:0010239: chloroplast mRNA processing	1.78E-03
52	GO:0009650: UV protection	1.78E-03
53	GO:1901332: negative regulation of lateral root development	1.78E-03
54	GO:0006869: lipid transport	2.11E-03
55	GO:0010114: response to red light	2.15E-03
56	GO:0031408: oxylipin biosynthetic process	2.16E-03
57	GO:0045727: positive regulation of translation	2.38E-03
58	GO:0015994: chlorophyll metabolic process	2.38E-03
59	GO:0015713: phosphoglycerate transport	2.38E-03
60	GO:0016042: lipid catabolic process	2.47E-03
61	GO:0009664: plant-type cell wall organization	2.87E-03
62	GO:0031365: N-terminal protein amino acid modification	3.05E-03
63	GO:0006665: sphingolipid metabolic process	3.05E-03
64	GO:0080110: sporopollenin biosynthetic process	3.05E-03
65	GO:0006564: L-serine biosynthetic process	3.05E-03
66	GO:0000413: protein peptidyl-prolyl isomerization	3.27E-03
67	GO:0009643: photosynthetic acclimation	3.76E-03
68	GO:0042549: photosystem II stabilization	3.76E-03
69	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.76E-03
70	GO:0000470: maturation of LSU-rRNA	3.76E-03
71	GO:0006655: phosphatidylglycerol biosynthetic process	3.76E-03
72	GO:0010189: vitamin E biosynthetic process	4.54E-03
73	GO:0010019: chloroplast-nucleus signaling pathway	4.54E-03
74	GO:0042372: phylloquinone biosynthetic process	4.54E-03
75	GO:1901259: chloroplast rRNA processing	4.54E-03
76	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.54E-03
77	GO:0009395: phospholipid catabolic process	5.36E-03
78	GO:0006400: tRNA modification	5.36E-03
79	GO:0045292: mRNA cis splicing, via spliceosome	6.22E-03
80	GO:0030091: protein repair	6.22E-03
81	GO:0042255: ribosome assembly	6.22E-03
82	GO:0006605: protein targeting	6.22E-03
83	GO:0009704: de-etiolation	6.22E-03
84	GO:0009627: systemic acquired resistance	7.04E-03
85	GO:0071482: cellular response to light stimulus	7.14E-03
86	GO:0000373: Group II intron splicing	8.10E-03
87	GO:0010206: photosystem II repair	8.10E-03
88	GO:0034765: regulation of ion transmembrane transport	8.10E-03
89	GO:0090333: regulation of stomatal closure	8.10E-03
90	GO:0010311: lateral root formation	8.66E-03
91	GO:0042761: very long-chain fatty acid biosynthetic process	9.10E-03
92	GO:0009631: cold acclimation	9.53E-03
93	GO:0048829: root cap development	1.01E-02
94	GO:0009451: RNA modification	1.02E-02
95	GO:0009637: response to blue light	1.05E-02
96	GO:0034599: cellular response to oxidative stress	1.09E-02
97	GO:0018119: peptidyl-cysteine S-nitrosylation	1.12E-02
98	GO:0048765: root hair cell differentiation	1.12E-02
99	GO:0043085: positive regulation of catalytic activity	1.12E-02
100	GO:0006879: cellular iron ion homeostasis	1.12E-02
101	GO:0006352: DNA-templated transcription, initiation	1.12E-02
102	GO:0006006: glucose metabolic process	1.35E-02
103	GO:0009767: photosynthetic electron transport chain	1.35E-02
104	GO:0010628: positive regulation of gene expression	1.35E-02
105	GO:0010143: cutin biosynthetic process	1.48E-02
106	GO:0019253: reductive pentose-phosphate cycle	1.48E-02
107	GO:0009826: unidimensional cell growth	1.65E-02
108	GO:0006833: water transport	1.73E-02
109	GO:0010025: wax biosynthetic process	1.73E-02
110	GO:0000027: ribosomal large subunit assembly	1.86E-02
111	GO:0019953: sexual reproduction	2.00E-02
112	GO:0007017: microtubule-based process	2.00E-02
113	GO:0009695: jasmonic acid biosynthetic process	2.00E-02
114	GO:0009768: photosynthesis, light harvesting in photosystem I	2.00E-02
115	GO:0003333: amino acid transmembrane transport	2.13E-02
116	GO:0030245: cellulose catabolic process	2.28E-02
117	GO:0055114: oxidation-reduction process	2.28E-02
118	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.37E-02
119	GO:0009411: response to UV	2.42E-02
120	GO:0009306: protein secretion	2.57E-02
121	GO:0010584: pollen exine formation	2.57E-02
122	GO:0019722: calcium-mediated signaling	2.57E-02
123	GO:0010091: trichome branching	2.57E-02
124	GO:0009624: response to nematode	2.60E-02
125	GO:0045454: cell redox homeostasis	2.84E-02
126	GO:0008033: tRNA processing	2.88E-02
127	GO:0034220: ion transmembrane transport	2.88E-02
128	GO:0042391: regulation of membrane potential	2.88E-02
129	GO:0080022: primary root development	2.88E-02
130	GO:0009958: positive gravitropism	3.04E-02
131	GO:0006662: glycerol ether metabolic process	3.04E-02
132	GO:0015986: ATP synthesis coupled proton transport	3.20E-02
133	GO:0006457: protein folding	3.48E-02
134	GO:0032259: methylation	3.49E-02
135	GO:0002229: defense response to oomycetes	3.53E-02
136	GO:0000302: response to reactive oxygen species	3.53E-02
137	GO:0032502: developmental process	3.70E-02
138	GO:0042744: hydrogen peroxide catabolic process	3.71E-02
139	GO:0009790: embryo development	3.80E-02
140	GO:0009409: response to cold	3.96E-02
141	GO:0007267: cell-cell signaling	4.22E-02
142	GO:0071805: potassium ion transmembrane transport	4.22E-02
143	GO:0045490: pectin catabolic process	4.48E-02
144	GO:0006810: transport	4.51E-02

Rank	GO Term	Adjusted P value
1	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
2	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
3	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
4	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
5	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
6	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
7	GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity	0.00E+00
8	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
9	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
10	GO:0019843: rRNA binding	9.00E-21
11	GO:0003735: structural constituent of ribosome	9.23E-12
12	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.71E-07
13	GO:0005528: FK506 binding	6.44E-06
14	GO:0016788: hydrolase activity, acting on ester bonds	2.71E-05
15	GO:0016851: magnesium chelatase activity	4.29E-05
16	GO:0008266: poly(U) RNA binding	9.31E-05
17	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.72E-04
18	GO:0051920: peroxiredoxin activity	2.33E-04
19	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	3.50E-04
20	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	3.50E-04
21	GO:0030794: (S)-coclaurine-N-methyltransferase activity	3.50E-04
22	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	3.50E-04
23	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	3.50E-04
24	GO:0045485: omega-6 fatty acid desaturase activity	3.50E-04
25	GO:0004321: fatty-acyl-CoA synthase activity	3.50E-04
26	GO:0005080: protein kinase C binding	3.50E-04
27	GO:0016209: antioxidant activity	3.80E-04
28	GO:0047746: chlorophyllase activity	7.62E-04
29	GO:0004617: phosphoglycerate dehydrogenase activity	7.62E-04
30	GO:0016630: protochlorophyllide reductase activity	7.62E-04
31	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	7.62E-04
32	GO:0016168: chlorophyll binding	8.91E-04
33	GO:0030267: glyoxylate reductase (NADP) activity	1.23E-03
34	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.23E-03
35	GO:0008864: formyltetrahydrofolate deformylase activity	1.23E-03
36	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.23E-03
37	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	1.23E-03
38	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	1.23E-03
39	GO:0052689: carboxylic ester hydrolase activity	1.56E-03
40	GO:0016491: oxidoreductase activity	1.61E-03
41	GO:0043023: ribosomal large subunit binding	1.78E-03
42	GO:0008097: 5S rRNA binding	1.78E-03
43	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.78E-03
44	GO:0015120: phosphoglycerate transmembrane transporter activity	2.38E-03
45	GO:0004659: prenyltransferase activity	2.38E-03
46	GO:0001053: plastid sigma factor activity	2.38E-03
47	GO:0051537: 2 iron, 2 sulfur cluster binding	2.38E-03
48	GO:0010011: auxin binding	2.38E-03
49	GO:0016987: sigma factor activity	2.38E-03
50	GO:0010328: auxin influx transmembrane transporter activity	2.38E-03
51	GO:0043495: protein anchor	2.38E-03
52	GO:0004392: heme oxygenase (decyclizing) activity	2.38E-03
53	GO:0022891: substrate-specific transmembrane transporter activity	2.57E-03
54	GO:0030570: pectate lyase activity	2.57E-03
55	GO:0009055: electron carrier activity	2.94E-03
56	GO:0009922: fatty acid elongase activity	3.05E-03
57	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.05E-03
58	GO:0003959: NADPH dehydrogenase activity	3.05E-03
59	GO:0004040: amidase activity	3.05E-03
60	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.76E-03
61	GO:0004130: cytochrome-c peroxidase activity	3.76E-03
62	GO:0016688: L-ascorbate peroxidase activity	3.76E-03
63	GO:0050662: coenzyme binding	3.79E-03
64	GO:0004601: peroxidase activity	4.01E-03
65	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	4.54E-03
66	GO:0005242: inward rectifier potassium channel activity	4.54E-03
67	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	4.54E-03
68	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	4.54E-03
69	GO:0008289: lipid binding	4.64E-03
70	GO:0008235: metalloexopeptidase activity	5.36E-03
71	GO:0019899: enzyme binding	5.36E-03
72	GO:0004033: aldo-keto reductase (NADP) activity	6.22E-03
73	GO:0052747: sinapyl alcohol dehydrogenase activity	6.22E-03
74	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	7.14E-03
75	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	8.10E-03
76	GO:0016207: 4-coumarate-CoA ligase activity	8.10E-03
77	GO:0047617: acyl-CoA hydrolase activity	9.10E-03
78	GO:0005381: iron ion transmembrane transporter activity	9.10E-03
79	GO:0008047: enzyme activator activity	1.01E-02
80	GO:0004177: aminopeptidase activity	1.12E-02
81	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.24E-02
82	GO:0031072: heat shock protein binding	1.35E-02
83	GO:0004565: beta-galactosidase activity	1.35E-02
84	GO:0051287: NAD binding	1.64E-02
85	GO:0008168: methyltransferase activity	1.65E-02
86	GO:0031409: pigment binding	1.73E-02
87	GO:0003690: double-stranded DNA binding	1.89E-02
88	GO:0051087: chaperone binding	2.00E-02
89	GO:0003723: RNA binding	2.19E-02
90	GO:0008810: cellulase activity	2.42E-02
91	GO:0003727: single-stranded RNA binding	2.57E-02
92	GO:0016746: transferase activity, transferring acyl groups	2.68E-02
93	GO:0047134: protein-disulfide reductase activity	2.72E-02
94	GO:0005249: voltage-gated potassium channel activity	2.88E-02
95	GO:0030551: cyclic nucleotide binding	2.88E-02
96	GO:0008080: N-acetyltransferase activity	3.04E-02
97	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.04E-02
98	GO:0004791: thioredoxin-disulfide reductase activity	3.20E-02
99	GO:0016829: lyase activity	3.52E-02
100	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.87E-02
101	GO:0000156: phosphorelay response regulator activity	3.87E-02
102	GO:0005507: copper ion binding	3.99E-02
103	GO:0016791: phosphatase activity	4.04E-02
104	GO:0046872: metal ion binding	4.05E-02
105	GO:0005200: structural constituent of cytoskeleton	4.22E-02
106	GO:0016597: amino acid binding	4.40E-02
107	GO:0015250: water channel activity	4.58E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009507: chloroplast	2.55E-61
3	GO:0009570: chloroplast stroma	1.95E-34
4	GO:0009941: chloroplast envelope	1.52E-31
5	GO:0009535: chloroplast thylakoid membrane	2.00E-31
6	GO:0009579: thylakoid	9.79E-26
7	GO:0009534: chloroplast thylakoid	2.54E-20
8	GO:0009543: chloroplast thylakoid lumen	1.45E-17
9	GO:0005840: ribosome	2.93E-14
10	GO:0031977: thylakoid lumen	2.20E-12
11	GO:0030095: chloroplast photosystem II	3.04E-06
12	GO:0048046: apoplast	9.70E-06
13	GO:0010007: magnesium chelatase complex	1.94E-05
14	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.29E-05
15	GO:0016020: membrane	1.08E-04
16	GO:0009706: chloroplast inner membrane	1.42E-04
17	GO:0009654: photosystem II oxygen evolving complex	1.75E-04
18	GO:0009923: fatty acid elongase complex	3.50E-04
19	GO:0009547: plastid ribosome	3.50E-04
20	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	3.50E-04
21	GO:0009515: granal stacked thylakoid	3.50E-04
22	GO:0009523: photosystem II	4.76E-04
23	GO:0019898: extrinsic component of membrane	4.76E-04
24	GO:0046658: anchored component of plasma membrane	6.82E-04
25	GO:0010287: plastoglobule	1.16E-03
26	GO:0000312: plastid small ribosomal subunit	1.29E-03
27	GO:0031969: chloroplast membrane	1.31E-03
28	GO:0015630: microtubule cytoskeleton	1.78E-03
29	GO:0042651: thylakoid membrane	1.96E-03
30	GO:0005618: cell wall	3.64E-03
31	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	3.76E-03
32	GO:0009536: plastid	4.13E-03
33	GO:0031225: anchored component of membrane	4.88E-03
34	GO:0009986: cell surface	5.36E-03
35	GO:0009533: chloroplast stromal thylakoid	5.36E-03
36	GO:0010319: stromule	5.61E-03
37	GO:0000311: plastid large ribosomal subunit	1.24E-02
38	GO:0030076: light-harvesting complex	1.60E-02
39	GO:0015935: small ribosomal subunit	2.13E-02
40	GO:0009522: photosystem I	3.20E-02
41	GO:0009505: plant-type cell wall	3.49E-02
42	GO:0009295: nucleoid	4.22E-02
43	GO:0030529: intracellular ribonucleoprotein complex	4.58E-02