Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G07020

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:0002184: cytoplasmic translational termination0.00E+00
3GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
4GO:0090470: shoot organ boundary specification0.00E+00
5GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
6GO:0015805: S-adenosyl-L-methionine transport0.00E+00
7GO:0042821: pyridoxal biosynthetic process0.00E+00
8GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
9GO:0042820: vitamin B6 catabolic process0.00E+00
10GO:0015979: photosynthesis3.79E-16
11GO:0009773: photosynthetic electron transport in photosystem I1.55E-14
12GO:0010027: thylakoid membrane organization2.34E-10
13GO:0009658: chloroplast organization2.64E-08
14GO:0010196: nonphotochemical quenching1.04E-07
15GO:0009735: response to cytokinin4.83E-07
16GO:0030388: fructose 1,6-bisphosphate metabolic process6.50E-06
17GO:0071482: cellular response to light stimulus2.05E-05
18GO:0032544: plastid translation2.05E-05
19GO:0006000: fructose metabolic process2.27E-05
20GO:0090391: granum assembly2.27E-05
21GO:0006094: gluconeogenesis9.32E-05
22GO:0010207: photosystem II assembly1.12E-04
23GO:0031365: N-terminal protein amino acid modification1.37E-04
24GO:0042254: ribosome biogenesis2.50E-04
25GO:0006810: transport3.24E-04
26GO:0006412: translation3.25E-04
27GO:0006400: tRNA modification3.44E-04
28GO:0033481: galacturonate biosynthetic process3.81E-04
29GO:0043686: co-translational protein modification3.81E-04
30GO:0034337: RNA folding3.81E-04
31GO:0071588: hydrogen peroxide mediated signaling pathway3.81E-04
32GO:0009443: pyridoxal 5'-phosphate salvage3.81E-04
33GO:1904966: positive regulation of vitamin E biosynthetic process3.81E-04
34GO:0000481: maturation of 5S rRNA3.81E-04
35GO:1904964: positive regulation of phytol biosynthetic process3.81E-04
36GO:0048564: photosystem I assembly4.31E-04
37GO:0006002: fructose 6-phosphate metabolic process5.27E-04
38GO:0009657: plastid organization5.27E-04
39GO:0006729: tetrahydrobiopterin biosynthetic process8.27E-04
40GO:0010024: phytochromobilin biosynthetic process8.27E-04
41GO:0010270: photosystem II oxygen evolving complex assembly8.27E-04
42GO:0010115: regulation of abscisic acid biosynthetic process8.27E-04
43GO:1902326: positive regulation of chlorophyll biosynthetic process8.27E-04
44GO:0034755: iron ion transmembrane transport8.27E-04
45GO:0043085: positive regulation of catalytic activity9.99E-04
46GO:0006415: translational termination9.99E-04
47GO:0006352: DNA-templated transcription, initiation9.99E-04
48GO:0009750: response to fructose9.99E-04
49GO:0005983: starch catabolic process1.14E-03
50GO:0015995: chlorophyll biosynthetic process1.19E-03
51GO:0005986: sucrose biosynthetic process1.29E-03
52GO:0006954: inflammatory response1.34E-03
53GO:0006518: peptide metabolic process1.34E-03
54GO:0010581: regulation of starch biosynthetic process1.34E-03
55GO:0006788: heme oxidation1.34E-03
56GO:0071492: cellular response to UV-A1.34E-03
57GO:0018298: protein-chromophore linkage1.35E-03
58GO:0019253: reductive pentose-phosphate cycle1.46E-03
59GO:0042744: hydrogen peroxide catabolic process1.86E-03
60GO:2001141: regulation of RNA biosynthetic process1.93E-03
61GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.93E-03
62GO:0010371: regulation of gibberellin biosynthetic process1.93E-03
63GO:0006020: inositol metabolic process1.93E-03
64GO:0009152: purine ribonucleotide biosynthetic process1.93E-03
65GO:0046653: tetrahydrofolate metabolic process1.93E-03
66GO:0009052: pentose-phosphate shunt, non-oxidative branch1.93E-03
67GO:0016556: mRNA modification1.93E-03
68GO:0009768: photosynthesis, light harvesting in photosystem I2.22E-03
69GO:0045454: cell redox homeostasis2.25E-03
70GO:0010037: response to carbon dioxide2.60E-03
71GO:0015976: carbon utilization2.60E-03
72GO:0071486: cellular response to high light intensity2.60E-03
73GO:0045727: positive regulation of translation2.60E-03
74GO:0015994: chlorophyll metabolic process2.60E-03
75GO:2000122: negative regulation of stomatal complex development2.60E-03
76GO:0006546: glycine catabolic process2.60E-03
77GO:0006021: inositol biosynthetic process2.60E-03
78GO:0071483: cellular response to blue light2.60E-03
79GO:0010021: amylopectin biosynthetic process2.60E-03
80GO:0032259: methylation3.02E-03
81GO:0009306: protein secretion3.17E-03
82GO:0006461: protein complex assembly3.32E-03
83GO:0009107: lipoate biosynthetic process3.32E-03
84GO:0080110: sporopollenin biosynthetic process3.32E-03
85GO:0006564: L-serine biosynthetic process3.32E-03
86GO:0010236: plastoquinone biosynthetic process3.32E-03
87GO:0042742: defense response to bacterium3.50E-03
88GO:0006561: proline biosynthetic process4.11E-03
89GO:0010304: PSII associated light-harvesting complex II catabolic process4.11E-03
90GO:0042549: photosystem II stabilization4.11E-03
91GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.11E-03
92GO:0000470: maturation of LSU-rRNA4.11E-03
93GO:0016554: cytidine to uridine editing4.11E-03
94GO:0010190: cytochrome b6f complex assembly4.11E-03
95GO:0006828: manganese ion transport4.11E-03
96GO:0046855: inositol phosphate dephosphorylation4.11E-03
97GO:0009854: oxidative photosynthetic carbon pathway4.95E-03
98GO:0010019: chloroplast-nucleus signaling pathway4.95E-03
99GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)4.95E-03
100GO:0010189: vitamin E biosynthetic process4.95E-03
101GO:0009395: phospholipid catabolic process5.85E-03
102GO:0009772: photosynthetic electron transport in photosystem II5.85E-03
103GO:0009645: response to low light intensity stimulus5.85E-03
104GO:0050829: defense response to Gram-negative bacterium5.85E-03
105GO:0009409: response to cold6.75E-03
106GO:0030091: protein repair6.80E-03
107GO:0006605: protein targeting6.80E-03
108GO:0009704: de-etiolation6.80E-03
109GO:0032508: DNA duplex unwinding6.80E-03
110GO:0017004: cytochrome complex assembly7.80E-03
111GO:0019430: removal of superoxide radicals7.80E-03
112GO:0090305: nucleic acid phosphodiester bond hydrolysis8.86E-03
113GO:0006098: pentose-phosphate shunt8.86E-03
114GO:0010206: photosystem II repair8.86E-03
115GO:0034765: regulation of ion transmembrane transport8.86E-03
116GO:0000373: Group II intron splicing8.86E-03
117GO:0009817: defense response to fungus, incompatible interaction9.36E-03
118GO:0010205: photoinhibition9.96E-03
119GO:0006779: porphyrin-containing compound biosynthetic process9.96E-03
120GO:1900865: chloroplast RNA modification9.96E-03
121GO:0010380: regulation of chlorophyll biosynthetic process9.96E-03
122GO:0009688: abscisic acid biosynthetic process1.11E-02
123GO:0006782: protoporphyrinogen IX biosynthetic process1.11E-02
124GO:0009637: response to blue light1.19E-02
125GO:0009853: photorespiration1.19E-02
126GO:0006816: calcium ion transport1.23E-02
127GO:0009073: aromatic amino acid family biosynthetic process1.23E-02
128GO:0008285: negative regulation of cell proliferation1.23E-02
129GO:0006879: cellular iron ion homeostasis1.23E-02
130GO:0018119: peptidyl-cysteine S-nitrosylation1.23E-02
131GO:0034599: cellular response to oxidative stress1.24E-02
132GO:0006790: sulfur compound metabolic process1.36E-02
133GO:0008152: metabolic process1.42E-02
134GO:0009767: photosynthetic electron transport chain1.48E-02
135GO:0010628: positive regulation of gene expression1.48E-02
136GO:0010114: response to red light1.54E-02
137GO:0010020: chloroplast fission1.62E-02
138GO:0009644: response to high light intensity1.66E-02
139GO:0046854: phosphatidylinositol phosphorylation1.75E-02
140GO:0009225: nucleotide-sugar metabolic process1.75E-02
141GO:0005985: sucrose metabolic process1.75E-02
142GO:0090351: seedling development1.75E-02
143GO:0019762: glucosinolate catabolic process1.89E-02
144GO:0000027: ribosomal large subunit assembly2.04E-02
145GO:0006364: rRNA processing2.08E-02
146GO:0010073: meristem maintenance2.19E-02
147GO:0009695: jasmonic acid biosynthetic process2.19E-02
148GO:0061077: chaperone-mediated protein folding2.34E-02
149GO:0009269: response to desiccation2.34E-02
150GO:0031408: oxylipin biosynthetic process2.34E-02
151GO:0006096: glycolytic process2.46E-02
152GO:0016226: iron-sulfur cluster assembly2.50E-02
153GO:0010227: floral organ abscission2.65E-02
154GO:0010584: pollen exine formation2.82E-02
155GO:0009561: megagametogenesis2.82E-02
156GO:0042391: regulation of membrane potential3.15E-02
157GO:0010182: sugar mediated signaling pathway3.33E-02
158GO:0006662: glycerol ether metabolic process3.33E-02
159GO:0006814: sodium ion transport3.50E-02
160GO:0055114: oxidation-reduction process3.50E-02
161GO:0048544: recognition of pollen3.50E-02
162GO:0015986: ATP synthesis coupled proton transport3.50E-02
163GO:0019252: starch biosynthetic process3.68E-02
164GO:0006508: proteolysis3.73E-02
165GO:0000302: response to reactive oxygen species3.86E-02
166GO:0019761: glucosinolate biosynthetic process4.05E-02
167GO:0030163: protein catabolic process4.24E-02
168GO:0019760: glucosinolate metabolic process4.43E-02
169GO:0071805: potassium ion transmembrane transport4.62E-02
RankGO TermAdjusted P value
1GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
2GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
3GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
4GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
5GO:0008887: glycerate kinase activity0.00E+00
6GO:0010301: xanthoxin dehydrogenase activity0.00E+00
7GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
8GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
9GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
10GO:0019843: rRNA binding6.15E-10
11GO:0005528: FK506 binding2.10E-07
12GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.95E-06
13GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.50E-06
14GO:0016149: translation release factor activity, codon specific4.98E-05
15GO:0001053: plastid sigma factor activity8.79E-05
16GO:0016987: sigma factor activity8.79E-05
17GO:0031072: heat shock protein binding9.32E-05
18GO:0046872: metal ion binding1.13E-04
19GO:0016168: chlorophyll binding1.22E-04
20GO:0051920: peroxiredoxin activity2.66E-04
21GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.81E-04
22GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity3.81E-04
23GO:0030794: (S)-coclaurine-N-methyltransferase activity3.81E-04
24GO:0009496: plastoquinol--plastocyanin reductase activity3.81E-04
25GO:0050308: sugar-phosphatase activity3.81E-04
26GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.81E-04
27GO:0004321: fatty-acyl-CoA synthase activity3.81E-04
28GO:0019203: carbohydrate phosphatase activity3.81E-04
29GO:0042586: peptide deformylase activity3.81E-04
30GO:0005080: protein kinase C binding3.81E-04
31GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.81E-04
32GO:0016209: antioxidant activity4.31E-04
33GO:0004033: aldo-keto reductase (NADP) activity4.31E-04
34GO:0003747: translation release factor activity6.32E-04
35GO:0047746: chlorophyllase activity8.27E-04
36GO:0004618: phosphoglycerate kinase activity8.27E-04
37GO:0004617: phosphoglycerate dehydrogenase activity8.27E-04
38GO:0052832: inositol monophosphate 3-phosphatase activity8.27E-04
39GO:0033201: alpha-1,4-glucan synthase activity8.27E-04
40GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity8.27E-04
41GO:0018708: thiol S-methyltransferase activity8.27E-04
42GO:0016630: protochlorophyllide reductase activity8.27E-04
43GO:0008934: inositol monophosphate 1-phosphatase activity8.27E-04
44GO:0052833: inositol monophosphate 4-phosphatase activity8.27E-04
45GO:0008967: phosphoglycolate phosphatase activity8.27E-04
46GO:0008047: enzyme activator activity8.68E-04
47GO:0008168: methyltransferase activity1.05E-03
48GO:0004601: peroxidase activity1.12E-03
49GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.34E-03
50GO:0070402: NADPH binding1.34E-03
51GO:0008864: formyltetrahydrofolate deformylase activity1.34E-03
52GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.34E-03
53GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.34E-03
54GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.34E-03
55GO:0004373: glycogen (starch) synthase activity1.34E-03
56GO:0016992: lipoate synthase activity1.34E-03
57GO:0004751: ribose-5-phosphate isomerase activity1.34E-03
58GO:0008266: poly(U) RNA binding1.46E-03
59GO:0004222: metalloendopeptidase activity1.53E-03
60GO:0031409: pigment binding1.82E-03
61GO:0043023: ribosomal large subunit binding1.93E-03
62GO:0008097: 5S rRNA binding1.93E-03
63GO:0008508: bile acid:sodium symporter activity1.93E-03
64GO:0016851: magnesium chelatase activity1.93E-03
65GO:0003735: structural constituent of ribosome2.16E-03
66GO:0004659: prenyltransferase activity2.60E-03
67GO:0005319: lipid transporter activity2.60E-03
68GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.60E-03
69GO:0004045: aminoacyl-tRNA hydrolase activity2.60E-03
70GO:0009011: starch synthase activity2.60E-03
71GO:0050378: UDP-glucuronate 4-epimerase activity2.60E-03
72GO:0043495: protein anchor2.60E-03
73GO:0004392: heme oxygenase (decyclizing) activity2.60E-03
74GO:0051537: 2 iron, 2 sulfur cluster binding2.80E-03
75GO:0022891: substrate-specific transmembrane transporter activity2.92E-03
76GO:0003723: RNA binding3.06E-03
77GO:0003959: NADPH dehydrogenase activity3.32E-03
78GO:0016773: phosphotransferase activity, alcohol group as acceptor3.32E-03
79GO:2001070: starch binding4.11E-03
80GO:0004332: fructose-bisphosphate aldolase activity4.11E-03
81GO:0004130: cytochrome-c peroxidase activity4.11E-03
82GO:0016688: L-ascorbate peroxidase activity4.11E-03
83GO:0004791: thioredoxin-disulfide reductase activity4.31E-03
84GO:0050662: coenzyme binding4.31E-03
85GO:0005242: inward rectifier potassium channel activity4.95E-03
86GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.95E-03
87GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.95E-03
88GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.95E-03
89GO:0016788: hydrolase activity, acting on ester bonds5.01E-03
90GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor5.64E-03
91GO:0051082: unfolded protein binding5.80E-03
92GO:0008235: metalloexopeptidase activity5.85E-03
93GO:0019899: enzyme binding5.85E-03
94GO:0008237: metallopeptidase activity6.37E-03
95GO:0016597: amino acid binding6.76E-03
96GO:0052747: sinapyl alcohol dehydrogenase activity6.80E-03
97GO:0043022: ribosome binding6.80E-03
98GO:0016207: 4-coumarate-CoA ligase activity8.86E-03
99GO:0008138: protein tyrosine/serine/threonine phosphatase activity8.86E-03
100GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity9.36E-03
101GO:0047617: acyl-CoA hydrolase activity9.96E-03
102GO:0005381: iron ion transmembrane transporter activity9.96E-03
103GO:0005384: manganese ion transmembrane transporter activity9.96E-03
104GO:0030234: enzyme regulator activity1.11E-02
105GO:0004177: aminopeptidase activity1.23E-02
106GO:0015386: potassium:proton antiporter activity1.23E-02
107GO:0003824: catalytic activity1.25E-02
108GO:0045551: cinnamyl-alcohol dehydrogenase activity1.36E-02
109GO:0004519: endonuclease activity1.39E-02
110GO:0004089: carbonate dehydratase activity1.48E-02
111GO:0015095: magnesium ion transmembrane transporter activity1.48E-02
112GO:0004565: beta-galactosidase activity1.48E-02
113GO:0004022: alcohol dehydrogenase (NAD) activity1.48E-02
114GO:0042802: identical protein binding1.58E-02
115GO:0016491: oxidoreductase activity1.77E-02
116GO:0051536: iron-sulfur cluster binding2.04E-02
117GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.08E-02
118GO:0015079: potassium ion transmembrane transporter activity2.19E-02
119GO:0004176: ATP-dependent peptidase activity2.34E-02
120GO:0005509: calcium ion binding2.59E-02
121GO:0047134: protein-disulfide reductase activity2.98E-02
122GO:0005249: voltage-gated potassium channel activity3.15E-02
123GO:0030551: cyclic nucleotide binding3.15E-02
124GO:0008080: N-acetyltransferase activity3.33E-02
125GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.33E-02
126GO:0048038: quinone binding3.86E-02
127GO:0004518: nuclease activity4.05E-02
128GO:0000156: phosphorelay response regulator activity4.24E-02
129GO:0030246: carbohydrate binding4.42E-02
130GO:0016759: cellulose synthase activity4.43E-02
131GO:0009055: electron carrier activity4.69E-02
RankGO TermAdjusted P value
1GO:0009575: chromoplast stroma0.00E+00
2GO:0009515: granal stacked thylakoid0.00E+00
3GO:0009507: chloroplast9.24E-84
4GO:0009535: chloroplast thylakoid membrane1.75E-43
5GO:0009570: chloroplast stroma5.42E-32
6GO:0009941: chloroplast envelope4.09E-28
7GO:0009534: chloroplast thylakoid5.52E-21
8GO:0009579: thylakoid9.36E-20
9GO:0009543: chloroplast thylakoid lumen3.75E-17
10GO:0031977: thylakoid lumen4.35E-09
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.42E-09
12GO:0010319: stromule5.23E-06
13GO:0009654: photosystem II oxygen evolving complex1.05E-05
14GO:0042651: thylakoid membrane1.05E-05
15GO:0010287: plastoglobule3.28E-05
16GO:0009523: photosystem II4.82E-05
17GO:0019898: extrinsic component of membrane4.82E-05
18GO:0031969: chloroplast membrane6.93E-05
19GO:0005840: ribosome1.09E-04
20GO:0030095: chloroplast photosystem II1.12E-04
21GO:0009533: chloroplast stromal thylakoid3.44E-04
22GO:0009547: plastid ribosome3.81E-04
23GO:0009782: photosystem I antenna complex3.81E-04
24GO:0043190: ATP-binding cassette (ABC) transporter complex3.81E-04
25GO:0010007: magnesium chelatase complex1.34E-03
26GO:0030076: light-harvesting complex1.63E-03
27GO:0016020: membrane3.16E-03
28GO:0009512: cytochrome b6f complex3.32E-03
29GO:0048046: apoplast4.09E-03
30GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)4.11E-03
31GO:0009840: chloroplastic endopeptidase Clp complex4.95E-03
32GO:0009706: chloroplast inner membrane5.80E-03
33GO:0009501: amyloplast6.80E-03
34GO:0030529: intracellular ribonucleoprotein complex7.16E-03
35GO:0000311: plastid large ribosomal subunit1.36E-02
36GO:0032040: small-subunit processome1.36E-02
37GO:0009536: plastid1.55E-02
38GO:0000312: plastid small ribosomal subunit1.62E-02
39GO:0015935: small ribosomal subunit2.34E-02
40GO:0009532: plastid stroma2.34E-02
41GO:0009522: photosystem I3.50E-02
42GO:0032580: Golgi cisterna membrane4.43E-02
43GO:0043231: intracellular membrane-bounded organelle4.85E-02
Gene type



Gene DE type