Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G05740

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
3GO:0070125: mitochondrial translational elongation0.00E+00
4GO:0006429: leucyl-tRNA aminoacylation0.00E+00
5GO:0002184: cytoplasmic translational termination0.00E+00
6GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
7GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
8GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
9GO:0061635: regulation of protein complex stability0.00E+00
10GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
11GO:0042407: cristae formation0.00E+00
12GO:0007638: mechanosensory behavior0.00E+00
13GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
14GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
15GO:0009658: chloroplast organization8.79E-09
16GO:0006412: translation1.31E-08
17GO:0015979: photosynthesis4.72E-08
18GO:0042254: ribosome biogenesis1.91E-06
19GO:0010027: thylakoid membrane organization3.97E-06
20GO:0030388: fructose 1,6-bisphosphate metabolic process4.84E-06
21GO:0015995: chlorophyll biosynthetic process6.09E-06
22GO:0006418: tRNA aminoacylation for protein translation6.49E-06
23GO:0071482: cellular response to light stimulus1.41E-05
24GO:0032544: plastid translation1.41E-05
25GO:0006000: fructose metabolic process1.71E-05
26GO:0009773: photosynthetic electron transport in photosystem I4.32E-05
27GO:0009793: embryo development ending in seed dormancy5.35E-05
28GO:0010207: photosystem II assembly8.01E-05
29GO:0032543: mitochondrial translation1.07E-04
30GO:0042549: photosystem II stabilization1.54E-04
31GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.54E-04
32GO:0010190: cytochrome b6f complex assembly1.54E-04
33GO:0061077: chaperone-mediated protein folding1.75E-04
34GO:0010067: procambium histogenesis2.10E-04
35GO:0016117: carotenoid biosynthetic process2.82E-04
36GO:0000413: protein peptidyl-prolyl isomerization3.14E-04
37GO:0042371: vitamin K biosynthetic process3.27E-04
38GO:0006430: lysyl-tRNA aminoacylation3.27E-04
39GO:0071588: hydrogen peroxide mediated signaling pathway3.27E-04
40GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.27E-04
41GO:1904966: positive regulation of vitamin E biosynthetic process3.27E-04
42GO:1904964: positive regulation of phytol biosynthetic process3.27E-04
43GO:0009735: response to cytokinin3.63E-04
44GO:0006002: fructose 6-phosphate metabolic process4.21E-04
45GO:0006779: porphyrin-containing compound biosynthetic process5.99E-04
46GO:1900865: chloroplast RNA modification5.99E-04
47GO:0006782: protoporphyrinogen IX biosynthetic process6.98E-04
48GO:0006568: tryptophan metabolic process7.13E-04
49GO:0010270: photosystem II oxygen evolving complex assembly7.13E-04
50GO:0043039: tRNA aminoacylation7.13E-04
51GO:1902326: positive regulation of chlorophyll biosynthetic process7.13E-04
52GO:0034755: iron ion transmembrane transport7.13E-04
53GO:0006423: cysteinyl-tRNA aminoacylation7.13E-04
54GO:0006457: protein folding7.96E-04
55GO:0006816: calcium ion transport8.05E-04
56GO:0043085: positive regulation of catalytic activity8.05E-04
57GO:0006352: DNA-templated transcription, initiation8.05E-04
58GO:0006415: translational termination8.05E-04
59GO:0006094: gluconeogenesis1.04E-03
60GO:0005986: sucrose biosynthetic process1.04E-03
61GO:0090506: axillary shoot meristem initiation1.16E-03
62GO:0006954: inflammatory response1.16E-03
63GO:0006518: peptide metabolic process1.16E-03
64GO:0010581: regulation of starch biosynthetic process1.16E-03
65GO:0006696: ergosterol biosynthetic process1.16E-03
66GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.16E-03
67GO:0010223: secondary shoot formation1.17E-03
68GO:0010020: chloroplast fission1.17E-03
69GO:0090351: seedling development1.31E-03
70GO:0009790: embryo development1.37E-03
71GO:0045454: cell redox homeostasis1.50E-03
72GO:0016556: mRNA modification1.66E-03
73GO:2001141: regulation of RNA biosynthetic process1.66E-03
74GO:0007231: osmosensory signaling pathway1.66E-03
75GO:0019048: modulation by virus of host morphology or physiology1.66E-03
76GO:0006424: glutamyl-tRNA aminoacylation1.66E-03
77GO:0031048: chromatin silencing by small RNA1.66E-03
78GO:0010088: phloem development1.66E-03
79GO:0043572: plastid fission1.66E-03
80GO:0010021: amylopectin biosynthetic process2.23E-03
81GO:0009765: photosynthesis, light harvesting2.23E-03
82GO:0015994: chlorophyll metabolic process2.23E-03
83GO:0033500: carbohydrate homeostasis2.23E-03
84GO:0006021: inositol biosynthetic process2.23E-03
85GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway2.23E-03
86GO:0071483: cellular response to blue light2.23E-03
87GO:0051567: histone H3-K9 methylation2.23E-03
88GO:0001944: vasculature development2.33E-03
89GO:0010089: xylem development2.53E-03
90GO:0006813: potassium ion transport2.77E-03
91GO:0031365: N-terminal protein amino acid modification2.84E-03
92GO:0016123: xanthophyll biosynthetic process2.84E-03
93GO:0048359: mucilage metabolic process involved in seed coat development2.84E-03
94GO:0006564: L-serine biosynthetic process2.84E-03
95GO:0016120: carotene biosynthetic process2.84E-03
96GO:0010236: plastoquinone biosynthetic process2.84E-03
97GO:0045038: protein import into chloroplast thylakoid membrane2.84E-03
98GO:0000470: maturation of LSU-rRNA3.51E-03
99GO:0016554: cytidine to uridine editing3.51E-03
100GO:0006828: manganese ion transport3.51E-03
101GO:0032973: amino acid export3.51E-03
102GO:0016458: gene silencing3.51E-03
103GO:0006014: D-ribose metabolic process3.51E-03
104GO:0019252: starch biosynthetic process3.68E-03
105GO:0009854: oxidative photosynthetic carbon pathway4.23E-03
106GO:0010019: chloroplast-nucleus signaling pathway4.23E-03
107GO:0010555: response to mannitol4.23E-03
108GO:0042372: phylloquinone biosynthetic process4.23E-03
109GO:0009082: branched-chain amino acid biosynthetic process4.23E-03
110GO:0006458: 'de novo' protein folding4.23E-03
111GO:0042026: protein refolding4.23E-03
112GO:0009099: valine biosynthetic process4.23E-03
113GO:0009772: photosynthetic electron transport in photosystem II4.99E-03
114GO:0043090: amino acid import4.99E-03
115GO:0006614: SRP-dependent cotranslational protein targeting to membrane4.99E-03
116GO:0006400: tRNA modification4.99E-03
117GO:0000105: histidine biosynthetic process5.80E-03
118GO:0009819: drought recovery5.80E-03
119GO:0009642: response to light intensity5.80E-03
120GO:0017004: cytochrome complex assembly6.65E-03
121GO:0019430: removal of superoxide radicals6.65E-03
122GO:0009097: isoleucine biosynthetic process6.65E-03
123GO:0009657: plastid organization6.65E-03
124GO:0042744: hydrogen peroxide catabolic process6.81E-03
125GO:0048481: plant ovule development7.44E-03
126GO:0018298: protein-chromophore linkage7.44E-03
127GO:0015780: nucleotide-sugar transport7.54E-03
128GO:0010206: photosystem II repair7.54E-03
129GO:0080144: amino acid homeostasis7.54E-03
130GO:0006783: heme biosynthetic process7.54E-03
131GO:0043067: regulation of programmed cell death8.48E-03
132GO:0009098: leucine biosynthetic process8.48E-03
133GO:0010380: regulation of chlorophyll biosynthetic process8.48E-03
134GO:0009637: response to blue light9.44E-03
135GO:0009853: photorespiration9.44E-03
136GO:0030422: production of siRNA involved in RNA interference9.45E-03
137GO:0034599: cellular response to oxidative stress9.88E-03
138GO:0009073: aromatic amino acid family biosynthetic process1.05E-02
139GO:0006879: cellular iron ion homeostasis1.05E-02
140GO:0009750: response to fructose1.05E-02
141GO:0018119: peptidyl-cysteine S-nitrosylation1.05E-02
142GO:0006790: sulfur compound metabolic process1.15E-02
143GO:0005983: starch catabolic process1.15E-02
144GO:0045037: protein import into chloroplast stroma1.15E-02
145GO:0010114: response to red light1.22E-02
146GO:0009718: anthocyanin-containing compound biosynthetic process1.26E-02
147GO:0019253: reductive pentose-phosphate cycle1.37E-02
148GO:0046854: phosphatidylinositol phosphorylation1.49E-02
149GO:0005985: sucrose metabolic process1.49E-02
150GO:0070588: calcium ion transmembrane transport1.49E-02
151GO:0019344: cysteine biosynthetic process1.73E-02
152GO:0080147: root hair cell development1.73E-02
153GO:0000027: ribosomal large subunit assembly1.73E-02
154GO:0007010: cytoskeleton organization1.73E-02
155GO:0009768: photosynthesis, light harvesting in photosystem I1.86E-02
156GO:0006306: DNA methylation1.99E-02
157GO:0016114: terpenoid biosynthetic process1.99E-02
158GO:0042742: defense response to bacterium2.01E-02
159GO:0080092: regulation of pollen tube growth2.12E-02
160GO:0016226: iron-sulfur cluster assembly2.12E-02
161GO:0006730: one-carbon metabolic process2.12E-02
162GO:0009306: protein secretion2.39E-02
163GO:0010087: phloem or xylem histogenesis2.68E-02
164GO:0010197: polar nucleus fusion2.82E-02
165GO:0006342: chromatin silencing2.82E-02
166GO:0006662: glycerol ether metabolic process2.82E-02
167GO:0007018: microtubule-based movement2.97E-02
168GO:0006814: sodium ion transport2.97E-02
169GO:0080156: mitochondrial mRNA modification3.28E-02
170GO:0000302: response to reactive oxygen species3.28E-02
171GO:0002229: defense response to oomycetes3.28E-02
172GO:0016125: sterol metabolic process3.76E-02
173GO:0006413: translational initiation3.78E-02
174GO:0006810: transport3.83E-02
175GO:0071805: potassium ion transmembrane transport3.92E-02
176GO:0051607: defense response to virus4.09E-02
177GO:0009451: RNA modification4.15E-02
178GO:0016126: sterol biosynthetic process4.26E-02
179GO:0009816: defense response to bacterium, incompatible interaction4.43E-02
180GO:0042128: nitrate assimilation4.61E-02
181GO:0016311: dephosphorylation4.96E-02
RankGO TermAdjusted P value
1GO:0046905: phytoene synthase activity0.00E+00
2GO:0046408: chlorophyll synthetase activity0.00E+00
3GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
4GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
5GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
6GO:0052834: inositol monophosphate phosphatase activity0.00E+00
7GO:0005048: signal sequence binding0.00E+00
8GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
9GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
10GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
11GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
12GO:0004496: mevalonate kinase activity0.00E+00
13GO:0008887: glycerate kinase activity0.00E+00
14GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
15GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
16GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
17GO:0045435: lycopene epsilon cyclase activity0.00E+00
18GO:0004823: leucine-tRNA ligase activity0.00E+00
19GO:0004822: isoleucine-tRNA ligase activity0.00E+00
20GO:0004401: histidinol-phosphatase activity0.00E+00
21GO:0019843: rRNA binding8.76E-15
22GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.57E-10
23GO:0003735: structural constituent of ribosome2.54E-09
24GO:0051920: peroxiredoxin activity4.04E-06
25GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity4.84E-06
26GO:0005528: FK506 binding5.19E-06
27GO:0016209: antioxidant activity9.78E-06
28GO:0004033: aldo-keto reductase (NADP) activity9.78E-06
29GO:0004812: aminoacyl-tRNA ligase activity1.68E-05
30GO:0002161: aminoacyl-tRNA editing activity1.71E-05
31GO:0016149: translation release factor activity, codon specific3.81E-05
32GO:0004659: prenyltransferase activity6.79E-05
33GO:0001053: plastid sigma factor activity6.79E-05
34GO:0016987: sigma factor activity6.79E-05
35GO:0010347: L-galactose-1-phosphate phosphatase activity3.27E-04
36GO:0004425: indole-3-glycerol-phosphate synthase activity3.27E-04
37GO:0004824: lysine-tRNA ligase activity3.27E-04
38GO:0004831: tyrosine-tRNA ligase activity3.27E-04
39GO:0004655: porphobilinogen synthase activity3.27E-04
40GO:0003867: 4-aminobutyrate transaminase activity3.27E-04
41GO:0051996: squalene synthase activity3.27E-04
42GO:0003747: translation release factor activity5.07E-04
43GO:0008047: enzyme activator activity6.98E-04
44GO:0047746: chlorophyllase activity7.13E-04
45GO:0004326: tetrahydrofolylpolyglutamate synthase activity7.13E-04
46GO:0004617: phosphoglycerate dehydrogenase activity7.13E-04
47GO:0052832: inositol monophosphate 3-phosphatase activity7.13E-04
48GO:0033201: alpha-1,4-glucan synthase activity7.13E-04
49GO:0004817: cysteine-tRNA ligase activity7.13E-04
50GO:0016630: protochlorophyllide reductase activity7.13E-04
51GO:0008934: inositol monophosphate 1-phosphatase activity7.13E-04
52GO:0052833: inositol monophosphate 4-phosphatase activity7.13E-04
53GO:0004310: farnesyl-diphosphate farnesyltransferase activity7.13E-04
54GO:0004601: peroxidase activity7.53E-04
55GO:0031072: heat shock protein binding1.04E-03
56GO:0004373: glycogen (starch) synthase activity1.16E-03
57GO:0004148: dihydrolipoyl dehydrogenase activity1.16E-03
58GO:0030267: glyoxylate reductase (NADP) activity1.16E-03
59GO:0043023: ribosomal large subunit binding1.66E-03
60GO:0052654: L-leucine transaminase activity1.66E-03
61GO:0008097: 5S rRNA binding1.66E-03
62GO:0008508: bile acid:sodium symporter activity1.66E-03
63GO:0052655: L-valine transaminase activity1.66E-03
64GO:0052656: L-isoleucine transaminase activity1.66E-03
65GO:0035197: siRNA binding1.66E-03
66GO:0015079: potassium ion transmembrane transporter activity1.78E-03
67GO:0008324: cation transmembrane transporter activity1.78E-03
68GO:0004176: ATP-dependent peptidase activity1.95E-03
69GO:0005319: lipid transporter activity2.23E-03
70GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed2.23E-03
71GO:1990137: plant seed peroxidase activity2.23E-03
72GO:0009011: starch synthase activity2.23E-03
73GO:0004084: branched-chain-amino-acid transaminase activity2.23E-03
74GO:0043495: protein anchor2.23E-03
75GO:0004519: endonuclease activity2.52E-03
76GO:0003959: NADPH dehydrogenase activity2.84E-03
77GO:0016773: phosphotransferase activity, alcohol group as acceptor2.84E-03
78GO:0004040: amidase activity2.84E-03
79GO:0004791: thioredoxin-disulfide reductase activity3.43E-03
80GO:0004130: cytochrome-c peroxidase activity3.51E-03
81GO:0016688: L-ascorbate peroxidase activity3.51E-03
82GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.23E-03
83GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.23E-03
84GO:0004747: ribokinase activity4.23E-03
85GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.23E-03
86GO:0051082: unfolded protein binding4.34E-03
87GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.49E-03
88GO:0016831: carboxy-lyase activity4.99E-03
89GO:0008235: metalloexopeptidase activity4.99E-03
90GO:0019899: enzyme binding4.99E-03
91GO:0008237: metallopeptidase activity5.07E-03
92GO:0008312: 7S RNA binding5.80E-03
93GO:0008865: fructokinase activity5.80E-03
94GO:0016168: chlorophyll binding6.03E-03
95GO:0008236: serine-type peptidase activity7.07E-03
96GO:0003723: RNA binding7.60E-03
97GO:0004222: metalloendopeptidase activity8.21E-03
98GO:0005384: manganese ion transmembrane transporter activity8.48E-03
99GO:0005381: iron ion transmembrane transporter activity8.48E-03
100GO:0046872: metal ion binding8.79E-03
101GO:0004177: aminopeptidase activity1.05E-02
102GO:0044183: protein binding involved in protein folding1.05E-02
103GO:0005089: Rho guanyl-nucleotide exchange factor activity1.05E-02
104GO:0015386: potassium:proton antiporter activity1.05E-02
105GO:0004521: endoribonuclease activity1.15E-02
106GO:0000049: tRNA binding1.15E-02
107GO:0015095: magnesium ion transmembrane transporter activity1.26E-02
108GO:0005262: calcium channel activity1.26E-02
109GO:0008081: phosphoric diester hydrolase activity1.26E-02
110GO:0051537: 2 iron, 2 sulfur cluster binding1.32E-02
111GO:0008266: poly(U) RNA binding1.37E-02
112GO:0031409: pigment binding1.61E-02
113GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.65E-02
114GO:0051536: iron-sulfur cluster binding1.73E-02
115GO:0005509: calcium ion binding1.76E-02
116GO:0033612: receptor serine/threonine kinase binding1.99E-02
117GO:0022891: substrate-specific transmembrane transporter activity2.25E-02
118GO:0008514: organic anion transmembrane transporter activity2.39E-02
119GO:0047134: protein-disulfide reductase activity2.53E-02
120GO:0005102: receptor binding2.53E-02
121GO:0008080: N-acetyltransferase activity2.82E-02
122GO:0003924: GTPase activity3.25E-02
123GO:0009055: electron carrier activity3.54E-02
124GO:0016759: cellulose synthase activity3.76E-02
125GO:0003729: mRNA binding3.91E-02
126GO:0016597: amino acid binding4.09E-02
127GO:0008017: microtubule binding4.24E-02
128GO:0003743: translation initiation factor activity4.72E-02
129GO:0004721: phosphoprotein phosphatase activity4.78E-02
RankGO TermAdjusted P value
1GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
2GO:0009507: chloroplast1.61E-87
3GO:0009570: chloroplast stroma4.63E-48
4GO:0009941: chloroplast envelope6.11E-40
5GO:0009535: chloroplast thylakoid membrane5.79E-26
6GO:0009543: chloroplast thylakoid lumen6.83E-18
7GO:0009579: thylakoid9.13E-16
8GO:0031977: thylakoid lumen3.05E-14
9GO:0005840: ribosome2.17E-10
10GO:0009534: chloroplast thylakoid6.32E-09
11GO:0031969: chloroplast membrane3.42E-07
12GO:0009654: photosystem II oxygen evolving complex6.49E-06
13GO:0009536: plastid1.73E-05
14GO:0000311: plastid large ribosomal subunit5.40E-05
15GO:0009706: chloroplast inner membrane1.15E-04
16GO:0009547: plastid ribosome3.27E-04
17GO:0043190: ATP-binding cassette (ABC) transporter complex3.27E-04
18GO:0019898: extrinsic component of membrane4.19E-04
19GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.07E-04
20GO:0080085: signal recognition particle, chloroplast targeting7.13E-04
21GO:0030095: chloroplast photosystem II1.17E-03
22GO:0005719: nuclear euchromatin1.66E-03
23GO:0042651: thylakoid membrane1.78E-03
24GO:0009523: photosystem II3.68E-03
25GO:0005874: microtubule4.53E-03
26GO:0009533: chloroplast stromal thylakoid4.99E-03
27GO:0010319: stromule5.07E-03
28GO:0010287: plastoglobule5.39E-03
29GO:0009501: amyloplast5.80E-03
30GO:0009539: photosystem II reaction center6.65E-03
31GO:0005786: signal recognition particle, endoplasmic reticulum targeting6.65E-03
32GO:0005811: lipid particle6.65E-03
33GO:0015030: Cajal body8.48E-03
34GO:0016324: apical plasma membrane9.45E-03
35GO:0030076: light-harvesting complex1.49E-02
36GO:0005875: microtubule associated complex1.61E-02
37GO:0015935: small ribosomal subunit1.99E-02
38GO:0009532: plastid stroma1.99E-02
39GO:0022625: cytosolic large ribosomal subunit2.13E-02
40GO:0005871: kinesin complex2.53E-02
41GO:0009522: photosystem I2.97E-02
42GO:0016020: membrane3.45E-02
43GO:0005759: mitochondrial matrix3.69E-02
44GO:0030529: intracellular ribonucleoprotein complex4.26E-02
Gene type



Gene DE type