GO Enrichment Analysis of Co-expressed Genes with
AT5G04810
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090470: shoot organ boundary specification | 0.00E+00 |
| 2 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 3 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 4 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 5 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 6 | GO:0015979: photosynthesis | 5.71E-08 |
| 7 | GO:0009773: photosynthetic electron transport in photosystem I | 1.38E-06 |
| 8 | GO:0042549: photosystem II stabilization | 1.43E-05 |
| 9 | GO:0010027: thylakoid membrane organization | 4.33E-05 |
| 10 | GO:0071482: cellular response to light stimulus | 4.70E-05 |
| 11 | GO:0000481: maturation of 5S rRNA | 7.58E-05 |
| 12 | GO:0033481: galacturonate biosynthetic process | 7.58E-05 |
| 13 | GO:0034337: RNA folding | 7.58E-05 |
| 14 | GO:0071588: hydrogen peroxide mediated signaling pathway | 7.58E-05 |
| 15 | GO:0006094: gluconeogenesis | 1.36E-04 |
| 16 | GO:0009658: chloroplast organization | 1.40E-04 |
| 17 | GO:0034755: iron ion transmembrane transport | 1.81E-04 |
| 18 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 1.81E-04 |
| 19 | GO:0010270: photosystem II oxygen evolving complex assembly | 1.81E-04 |
| 20 | GO:0009768: photosynthesis, light harvesting in photosystem I | 2.44E-04 |
| 21 | GO:0006000: fructose metabolic process | 3.05E-04 |
| 22 | GO:0090391: granum assembly | 3.05E-04 |
| 23 | GO:0006518: peptide metabolic process | 3.05E-04 |
| 24 | GO:2001141: regulation of RNA biosynthetic process | 4.41E-04 |
| 25 | GO:0010371: regulation of gibberellin biosynthetic process | 4.41E-04 |
| 26 | GO:0009152: purine ribonucleotide biosynthetic process | 4.41E-04 |
| 27 | GO:0046653: tetrahydrofolate metabolic process | 4.41E-04 |
| 28 | GO:0015994: chlorophyll metabolic process | 5.87E-04 |
| 29 | GO:0080110: sporopollenin biosynthetic process | 7.44E-04 |
| 30 | GO:0006564: L-serine biosynthetic process | 7.44E-04 |
| 31 | GO:0031365: N-terminal protein amino acid modification | 7.44E-04 |
| 32 | GO:0016554: cytidine to uridine editing | 9.07E-04 |
| 33 | GO:0006828: manganese ion transport | 9.07E-04 |
| 34 | GO:0000470: maturation of LSU-rRNA | 9.07E-04 |
| 35 | GO:0018298: protein-chromophore linkage | 1.00E-03 |
| 36 | GO:0010019: chloroplast-nucleus signaling pathway | 1.08E-03 |
| 37 | GO:0009637: response to blue light | 1.25E-03 |
| 38 | GO:0010196: nonphotochemical quenching | 1.26E-03 |
| 39 | GO:0050829: defense response to Gram-negative bacterium | 1.26E-03 |
| 40 | GO:0009645: response to low light intensity stimulus | 1.26E-03 |
| 41 | GO:0006400: tRNA modification | 1.26E-03 |
| 42 | GO:0032508: DNA duplex unwinding | 1.46E-03 |
| 43 | GO:0048564: photosystem I assembly | 1.46E-03 |
| 44 | GO:0010114: response to red light | 1.60E-03 |
| 45 | GO:0032544: plastid translation | 1.66E-03 |
| 46 | GO:0006002: fructose 6-phosphate metabolic process | 1.66E-03 |
| 47 | GO:0006098: pentose-phosphate shunt | 1.87E-03 |
| 48 | GO:0090305: nucleic acid phosphodiester bond hydrolysis | 1.87E-03 |
| 49 | GO:0000373: Group II intron splicing | 1.87E-03 |
| 50 | GO:0009051: pentose-phosphate shunt, oxidative branch | 1.87E-03 |
| 51 | GO:1900865: chloroplast RNA modification | 2.09E-03 |
| 52 | GO:0006816: calcium ion transport | 2.56E-03 |
| 53 | GO:0008285: negative regulation of cell proliferation | 2.56E-03 |
| 54 | GO:0006415: translational termination | 2.56E-03 |
| 55 | GO:0006879: cellular iron ion homeostasis | 2.56E-03 |
| 56 | GO:0006352: DNA-templated transcription, initiation | 2.56E-03 |
| 57 | GO:0009750: response to fructose | 2.56E-03 |
| 58 | GO:0005983: starch catabolic process | 2.80E-03 |
| 59 | GO:0010628: positive regulation of gene expression | 3.06E-03 |
| 60 | GO:0006006: glucose metabolic process | 3.06E-03 |
| 61 | GO:0005986: sucrose biosynthetic process | 3.06E-03 |
| 62 | GO:0010207: photosystem II assembly | 3.32E-03 |
| 63 | GO:0009225: nucleotide-sugar metabolic process | 3.59E-03 |
| 64 | GO:0016575: histone deacetylation | 4.43E-03 |
| 65 | GO:0010073: meristem maintenance | 4.43E-03 |
| 66 | GO:0010227: floral organ abscission | 5.34E-03 |
| 67 | GO:0010584: pollen exine formation | 5.66E-03 |
| 68 | GO:0000302: response to reactive oxygen species | 7.69E-03 |
| 69 | GO:0071805: potassium ion transmembrane transport | 9.17E-03 |
| 70 | GO:0001666: response to hypoxia | 9.95E-03 |
| 71 | GO:0042128: nitrate assimilation | 1.07E-02 |
| 72 | GO:0015995: chlorophyll biosynthetic process | 1.12E-02 |
| 73 | GO:0016311: dephosphorylation | 1.16E-02 |
| 74 | GO:0010218: response to far red light | 1.28E-02 |
| 75 | GO:0009631: cold acclimation | 1.33E-02 |
| 76 | GO:0009853: photorespiration | 1.42E-02 |
| 77 | GO:0034599: cellular response to oxidative stress | 1.46E-02 |
| 78 | GO:0009640: photomorphogenesis | 1.70E-02 |
| 79 | GO:0009644: response to high light intensity | 1.79E-02 |
| 80 | GO:0006364: rRNA processing | 2.10E-02 |
| 81 | GO:0006813: potassium ion transport | 2.10E-02 |
| 82 | GO:0006096: glycolytic process | 2.36E-02 |
| 83 | GO:0009737: response to abscisic acid | 3.17E-02 |
| 84 | GO:0009058: biosynthetic process | 3.28E-02 |
| 85 | GO:0042744: hydrogen peroxide catabolic process | 3.47E-02 |
| 86 | GO:0006413: translational initiation | 3.78E-02 |
| 87 | GO:0040008: regulation of growth | 3.85E-02 |
| 88 | GO:0009451: RNA modification | 4.04E-02 |
| 89 | GO:0010228: vegetative to reproductive phase transition of meristem | 4.11E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 2 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 3 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 4 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 5 | GO:0016630: protochlorophyllide reductase activity | 1.81E-04 |
| 6 | GO:0047746: chlorophyllase activity | 1.81E-04 |
| 7 | GO:0004617: phosphoglycerate dehydrogenase activity | 1.81E-04 |
| 8 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 1.81E-04 |
| 9 | GO:0031409: pigment binding | 1.97E-04 |
| 10 | GO:0015079: potassium ion transmembrane transporter activity | 2.44E-04 |
| 11 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 3.05E-04 |
| 12 | GO:0008864: formyltetrahydrofolate deformylase activity | 3.05E-04 |
| 13 | GO:0048487: beta-tubulin binding | 4.41E-04 |
| 14 | GO:0016149: translation release factor activity, codon specific | 4.41E-04 |
| 15 | GO:0016987: sigma factor activity | 5.87E-04 |
| 16 | GO:0050378: UDP-glucuronate 4-epimerase activity | 5.87E-04 |
| 17 | GO:0004659: prenyltransferase activity | 5.87E-04 |
| 18 | GO:0001053: plastid sigma factor activity | 5.87E-04 |
| 19 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 5.87E-04 |
| 20 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 7.44E-04 |
| 21 | GO:0003959: NADPH dehydrogenase activity | 7.44E-04 |
| 22 | GO:0016168: chlorophyll binding | 8.20E-04 |
| 23 | GO:0004130: cytochrome-c peroxidase activity | 9.07E-04 |
| 24 | GO:0016688: L-ascorbate peroxidase activity | 9.07E-04 |
| 25 | GO:0004332: fructose-bisphosphate aldolase activity | 9.07E-04 |
| 26 | GO:0008235: metalloexopeptidase activity | 1.26E-03 |
| 27 | GO:0046872: metal ion binding | 1.44E-03 |
| 28 | GO:0043022: ribosome binding | 1.46E-03 |
| 29 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 1.66E-03 |
| 30 | GO:0003747: translation release factor activity | 1.87E-03 |
| 31 | GO:0005381: iron ion transmembrane transporter activity | 2.09E-03 |
| 32 | GO:0005384: manganese ion transmembrane transporter activity | 2.09E-03 |
| 33 | GO:0015386: potassium:proton antiporter activity | 2.56E-03 |
| 34 | GO:0004177: aminopeptidase activity | 2.56E-03 |
| 35 | GO:0015095: magnesium ion transmembrane transporter activity | 3.06E-03 |
| 36 | GO:0031072: heat shock protein binding | 3.06E-03 |
| 37 | GO:0004407: histone deacetylase activity | 4.15E-03 |
| 38 | GO:0005528: FK506 binding | 4.15E-03 |
| 39 | GO:0050662: coenzyme binding | 6.99E-03 |
| 40 | GO:0004518: nuclease activity | 8.05E-03 |
| 41 | GO:0016788: hydrolase activity, acting on ester bonds | 8.21E-03 |
| 42 | GO:0016597: amino acid binding | 9.56E-03 |
| 43 | GO:0005509: calcium ion binding | 1.11E-02 |
| 44 | GO:0004721: phosphoprotein phosphatase activity | 1.12E-02 |
| 45 | GO:0004222: metalloendopeptidase activity | 1.28E-02 |
| 46 | GO:0003824: catalytic activity | 1.38E-02 |
| 47 | GO:0003746: translation elongation factor activity | 1.42E-02 |
| 48 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.55E-02 |
| 49 | GO:0050661: NADP binding | 1.55E-02 |
| 50 | GO:0004519: endonuclease activity | 1.61E-02 |
| 51 | GO:0016491: oxidoreductase activity | 1.74E-02 |
| 52 | GO:0043621: protein self-association | 1.79E-02 |
| 53 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.79E-02 |
| 54 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.89E-02 |
| 55 | GO:0051287: NAD binding | 1.94E-02 |
| 56 | GO:0003723: RNA binding | 1.97E-02 |
| 57 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.10E-02 |
| 58 | GO:0051082: unfolded protein binding | 2.69E-02 |
| 59 | GO:0019843: rRNA binding | 3.16E-02 |
| 60 | GO:0016787: hydrolase activity | 3.19E-02 |
| 61 | GO:0003743: translation initiation factor activity | 4.44E-02 |
| 62 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 4.71E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 3.12E-34 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 5.36E-19 |
| 3 | GO:0009941: chloroplast envelope | 3.69E-10 |
| 4 | GO:0009534: chloroplast thylakoid | 6.16E-09 |
| 5 | GO:0009579: thylakoid | 1.15E-07 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 1.46E-06 |
| 7 | GO:0031977: thylakoid lumen | 4.79E-06 |
| 8 | GO:0009654: photosystem II oxygen evolving complex | 6.09E-06 |
| 9 | GO:0019898: extrinsic component of membrane | 2.14E-05 |
| 10 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 5.84E-05 |
| 11 | GO:0009782: photosystem I antenna complex | 7.58E-05 |
| 12 | GO:0009515: granal stacked thylakoid | 7.58E-05 |
| 13 | GO:0009570: chloroplast stroma | 9.27E-05 |
| 14 | GO:0030076: light-harvesting complex | 1.75E-04 |
| 15 | GO:0031969: chloroplast membrane | 1.48E-03 |
| 16 | GO:0032040: small-subunit processome | 2.80E-03 |
| 17 | GO:0030095: chloroplast photosystem II | 3.32E-03 |
| 18 | GO:0010287: plastoglobule | 3.59E-03 |
| 19 | GO:0016021: integral component of membrane | 6.70E-03 |
| 20 | GO:0009522: photosystem I | 6.99E-03 |
| 21 | GO:0009523: photosystem II | 7.34E-03 |
| 22 | GO:0032580: Golgi cisterna membrane | 8.79E-03 |
| 23 | GO:0030529: intracellular ribonucleoprotein complex | 9.95E-03 |
| 24 | GO:0016020: membrane | 2.35E-02 |
| 25 | GO:0009706: chloroplast inner membrane | 2.69E-02 |