co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G04230

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045176: apical protein localization	0.00E+00
2	GO:2000505: regulation of energy homeostasis	0.00E+00
3	GO:0033494: ferulate metabolic process	0.00E+00
4	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
5	GO:0009773: photosynthetic electron transport in photosystem I	1.88E-08
6	GO:0015979: photosynthesis	3.37E-06
7	GO:0009416: response to light stimulus	3.43E-05
8	GO:0000481: maturation of 5S rRNA	9.50E-05
9	GO:0006106: fumarate metabolic process	9.50E-05
10	GO:0034337: RNA folding	9.50E-05
11	GO:0071588: hydrogen peroxide mediated signaling pathway	9.50E-05
12	GO:0010205: photoinhibition	1.00E-04
13	GO:0006006: glucose metabolic process	1.88E-04
14	GO:0034755: iron ion transmembrane transport	2.24E-04
15	GO:0010115: regulation of abscisic acid biosynthetic process	2.24E-04
16	GO:0001736: establishment of planar polarity	2.24E-04
17	GO:0010024: phytochromobilin biosynthetic process	2.24E-04
18	GO:0006636: unsaturated fatty acid biosynthetic process	2.70E-04
19	GO:0006954: inflammatory response	3.73E-04
20	GO:0006518: peptide metabolic process	3.73E-04
21	GO:0006788: heme oxidation	3.73E-04
22	GO:0009152: purine ribonucleotide biosynthetic process	5.37E-04
23	GO:0046653: tetrahydrofolate metabolic process	5.37E-04
24	GO:0080170: hydrogen peroxide transmembrane transport	5.37E-04
25	GO:0030104: water homeostasis	7.14E-04
26	GO:0010109: regulation of photosynthesis	7.14E-04
27	GO:0015994: chlorophyll metabolic process	7.14E-04
28	GO:0006461: protein complex assembly	9.02E-04
29	GO:0009913: epidermal cell differentiation	1.10E-03
30	GO:0006596: polyamine biosynthetic process	1.10E-03
31	GO:0006561: proline biosynthetic process	1.10E-03
32	GO:0048759: xylem vessel member cell differentiation	1.10E-03
33	GO:0006751: glutathione catabolic process	1.10E-03
34	GO:0048827: phyllome development	1.10E-03
35	GO:0010019: chloroplast-nucleus signaling pathway	1.31E-03
36	GO:0018298: protein-chromophore linkage	1.33E-03
37	GO:1900057: positive regulation of leaf senescence	1.54E-03
38	GO:1900056: negative regulation of leaf senescence	1.54E-03
39	GO:0010196: nonphotochemical quenching	1.54E-03
40	GO:0009631: cold acclimation	1.54E-03
41	GO:0046620: regulation of organ growth	1.78E-03
42	GO:0032508: DNA duplex unwinding	1.78E-03
43	GO:0008610: lipid biosynthetic process	1.78E-03
44	GO:0006810: transport	1.84E-03
45	GO:0017004: cytochrome complex assembly	2.03E-03
46	GO:0071482: cellular response to light stimulus	2.03E-03
47	GO:0009657: plastid organization	2.03E-03
48	GO:0009926: auxin polar transport	2.16E-03
49	GO:0009051: pentose-phosphate shunt, oxidative branch	2.29E-03
50	GO:0006098: pentose-phosphate shunt	2.29E-03
51	GO:0009638: phototropism	2.56E-03
52	GO:0009688: abscisic acid biosynthetic process	2.85E-03
53	GO:0048829: root cap development	2.85E-03
54	GO:0006879: cellular iron ion homeostasis	3.14E-03
55	GO:0009750: response to fructose	3.14E-03
56	GO:0048765: root hair cell differentiation	3.14E-03
57	GO:0000038: very long-chain fatty acid metabolic process	3.14E-03
58	GO:0006096: glycolytic process	3.41E-03
59	GO:0010628: positive regulation of gene expression	3.76E-03
60	GO:0006108: malate metabolic process	3.76E-03
61	GO:0010229: inflorescence development	3.76E-03
62	GO:0006094: gluconeogenesis	3.76E-03
63	GO:0009785: blue light signaling pathway	3.76E-03
64	GO:0008152: metabolic process	4.03E-03
65	GO:0019253: reductive pentose-phosphate cycle	4.08E-03
66	GO:0010540: basipetal auxin transport	4.08E-03
67	GO:0010143: cutin biosynthetic process	4.08E-03
68	GO:0009768: photosynthesis, light harvesting in photosystem I	5.46E-03
69	GO:0006825: copper ion transport	5.46E-03
70	GO:0007017: microtubule-based process	5.46E-03
71	GO:0031408: oxylipin biosynthetic process	5.83E-03
72	GO:0003333: amino acid transmembrane transport	5.83E-03
73	GO:0031348: negative regulation of defense response	6.20E-03
74	GO:0006633: fatty acid biosynthetic process	6.42E-03
75	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	7.38E-03
76	GO:0034220: ion transmembrane transport	7.79E-03
77	GO:0010087: phloem or xylem histogenesis	7.79E-03
78	GO:0042335: cuticle development	7.79E-03
79	GO:0009958: positive gravitropism	8.21E-03
80	GO:0010182: sugar mediated signaling pathway	8.21E-03
81	GO:0048825: cotyledon development	9.06E-03
82	GO:0000302: response to reactive oxygen species	9.51E-03
83	GO:0071554: cell wall organization or biogenesis	9.51E-03
84	GO:0001666: response to hypoxia	1.23E-02
85	GO:0010027: thylakoid membrane organization	1.23E-02
86	GO:0009911: positive regulation of flower development	1.23E-02
87	GO:0042128: nitrate assimilation	1.33E-02
88	GO:0010311: lateral root formation	1.54E-02
89	GO:0010218: response to far red light	1.59E-02
90	GO:0006865: amino acid transport	1.70E-02
91	GO:0045087: innate immune response	1.76E-02
92	GO:0009637: response to blue light	1.76E-02
93	GO:0009853: photorespiration	1.76E-02
94	GO:0034599: cellular response to oxidative stress	1.81E-02
95	GO:0006099: tricarboxylic acid cycle	1.81E-02
96	GO:0030001: metal ion transport	1.93E-02
97	GO:0009733: response to auxin	2.09E-02
98	GO:0010114: response to red light	2.10E-02
99	GO:0051707: response to other organism	2.10E-02
100	GO:0009644: response to high light intensity	2.23E-02
101	GO:0016567: protein ubiquitination	2.25E-02
102	GO:0042538: hyperosmotic salinity response	2.47E-02
103	GO:0009409: response to cold	2.64E-02
104	GO:0009734: auxin-activated signaling pathway	2.83E-02
105	GO:0009624: response to nematode	3.34E-02
106	GO:0009058: biosynthetic process	4.07E-02
107	GO:0042744: hydrogen peroxide catabolic process	4.30E-02
108	GO:0007165: signal transduction	4.49E-02
109	GO:0009737: response to abscisic acid	4.62E-02
110	GO:0007623: circadian rhythm	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
2	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
3	GO:0010487: thermospermine synthase activity	0.00E+00
4	GO:0005528: FK506 binding	1.09E-07
5	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.49E-05
6	GO:0004871: signal transducer activity	5.85E-05
7	GO:0045485: omega-6 fatty acid desaturase activity	9.50E-05
8	GO:0016768: spermine synthase activity	9.50E-05
9	GO:0004333: fumarate hydratase activity	9.50E-05
10	GO:0050139: nicotinate-N-glucosyltransferase activity	9.50E-05
11	GO:0015194: L-serine transmembrane transporter activity	9.50E-05
12	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	2.24E-04
13	GO:0047746: chlorophyllase activity	2.24E-04
14	GO:0003839: gamma-glutamylcyclotransferase activity	2.24E-04
15	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	3.73E-04
16	GO:0008864: formyltetrahydrofolate deformylase activity	3.73E-04
17	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	3.73E-04
18	GO:0050734: hydroxycinnamoyltransferase activity	3.73E-04
19	GO:0001872: (1->3)-beta-D-glucan binding	5.37E-04
20	GO:0004392: heme oxygenase (decyclizing) activity	7.14E-04
21	GO:0010011: auxin binding	7.14E-04
22	GO:0004345: glucose-6-phosphate dehydrogenase activity	7.14E-04
23	GO:0010328: auxin influx transmembrane transporter activity	7.14E-04
24	GO:0016168: chlorophyll binding	1.09E-03
25	GO:0016688: L-ascorbate peroxidase activity	1.10E-03
26	GO:0004332: fructose-bisphosphate aldolase activity	1.10E-03
27	GO:0004130: cytochrome-c peroxidase activity	1.10E-03
28	GO:0051753: mannan synthase activity	1.31E-03
29	GO:0004017: adenylate kinase activity	1.31E-03
30	GO:0050661: NADP binding	1.91E-03
31	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.03E-03
32	GO:0005381: iron ion transmembrane transporter activity	2.56E-03
33	GO:0015386: potassium:proton antiporter activity	3.14E-03
34	GO:0016787: hydrolase activity	3.58E-03
35	GO:0008081: phosphoric diester hydrolase activity	3.76E-03
36	GO:0004022: alcohol dehydrogenase (NAD) activity	3.76E-03
37	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	4.75E-03
38	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	4.75E-03
39	GO:0031409: pigment binding	4.75E-03
40	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	4.75E-03
41	GO:0015079: potassium ion transmembrane transporter activity	5.46E-03
42	GO:0016491: oxidoreductase activity	6.39E-03
43	GO:0022891: substrate-specific transmembrane transporter activity	6.58E-03
44	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	6.58E-03
45	GO:0016791: phosphatase activity	1.09E-02
46	GO:0016788: hydrolase activity, acting on ester bonds	1.11E-02
47	GO:0005200: structural constituent of cytoskeleton	1.14E-02
48	GO:0016413: O-acetyltransferase activity	1.18E-02
49	GO:0015250: water channel activity	1.23E-02
50	GO:0030247: polysaccharide binding	1.38E-02
51	GO:0004721: phosphoprotein phosphatase activity	1.38E-02
52	GO:0004222: metalloendopeptidase activity	1.59E-02
53	GO:0015293: symporter activity	2.29E-02
54	GO:0051287: NAD binding	2.41E-02
55	GO:0015171: amino acid transmembrane transporter activity	2.80E-02
56	GO:0080043: quercetin 3-O-glucosyltransferase activity	3.14E-02
57	GO:0080044: quercetin 7-O-glucosyltransferase activity	3.14E-02
58	GO:0022857: transmembrane transporter activity	3.20E-02
59	GO:0016746: transferase activity, transferring acyl groups	3.42E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.04E-17
2	GO:0009543: chloroplast thylakoid lumen	1.53E-12
3	GO:0009535: chloroplast thylakoid membrane	2.52E-11
4	GO:0009534: chloroplast thylakoid	1.30E-09
5	GO:0031977: thylakoid lumen	5.12E-09
6	GO:0009579: thylakoid	2.34E-08
7	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	9.72E-07
8	GO:0009570: chloroplast stroma	1.55E-06
9	GO:0009941: chloroplast envelope	2.30E-06
10	GO:0045239: tricarboxylic acid cycle enzyme complex	9.50E-05
11	GO:0043674: columella	9.50E-05
12	GO:0009654: photosystem II oxygen evolving complex	3.32E-04
13	GO:0015630: microtubule cytoskeleton	5.37E-04
14	GO:0009523: photosystem II	6.82E-04
15	GO:0019898: extrinsic component of membrane	6.82E-04
16	GO:0042807: central vacuole	1.54E-03
17	GO:0009986: cell surface	1.54E-03
18	GO:0009533: chloroplast stromal thylakoid	1.54E-03
19	GO:0031969: chloroplast membrane	2.18E-03
20	GO:0008180: COP9 signalosome	2.29E-03
21	GO:0032040: small-subunit processome	3.44E-03
22	GO:0030095: chloroplast photosystem II	4.08E-03
23	GO:0030076: light-harvesting complex	4.41E-03
24	GO:0042651: thylakoid membrane	5.46E-03
25	GO:0005770: late endosome	8.21E-03
26	GO:0009522: photosystem I	8.63E-03
27	GO:0019005: SCF ubiquitin ligase complex	1.49E-02
28	GO:0016020: membrane	2.34E-02
29	GO:0000502: proteasome complex	2.60E-02
30	GO:0009706: chloroplast inner membrane	3.34E-02
31	GO:0010287: plastoglobule	3.78E-02
32	GO:0009705: plant-type vacuole membrane	4.93E-02