co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G04020

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
2	GO:2000541: positive regulation of protein geranylgeranylation	0.00E+00
3	GO:0000188: inactivation of MAPK activity	0.00E+00
4	GO:0016236: macroautophagy	0.00E+00
5	GO:0010606: positive regulation of cytoplasmic mRNA processing body assembly	0.00E+00
6	GO:0009991: response to extracellular stimulus	0.00E+00
7	GO:0007160: cell-matrix adhesion	0.00E+00
8	GO:0006903: vesicle targeting	0.00E+00
9	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
10	GO:0009846: pollen germination	2.48E-06
11	GO:0060321: acceptance of pollen	2.26E-05
12	GO:0009966: regulation of signal transduction	4.74E-05
13	GO:0055047: generative cell mitosis	4.74E-05
14	GO:0030242: pexophagy	4.74E-05
15	GO:0050684: regulation of mRNA processing	1.17E-04
16	GO:0007584: response to nutrient	1.17E-04
17	GO:0030010: establishment of cell polarity	1.17E-04
18	GO:0032784: regulation of DNA-templated transcription, elongation	2.00E-04
19	GO:0010154: fruit development	2.40E-04
20	GO:0006623: protein targeting to vacuole	2.79E-04
21	GO:0006612: protein targeting to membrane	2.94E-04
22	GO:0006893: Golgi to plasma membrane transport	2.94E-04
23	GO:0010107: potassium ion import	3.94E-04
24	GO:0045324: late endosome to vacuole transport	3.94E-04
25	GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA	3.94E-04
26	GO:0033320: UDP-D-xylose biosynthetic process	3.94E-04
27	GO:0098719: sodium ion import across plasma membrane	5.00E-04
28	GO:0018344: protein geranylgeranylation	5.00E-04
29	GO:0010225: response to UV-C	5.00E-04
30	GO:0042732: D-xylose metabolic process	6.13E-04
31	GO:0048527: lateral root development	6.43E-04
32	GO:0033962: cytoplasmic mRNA processing body assembly	7.31E-04
33	GO:0017148: negative regulation of translation	7.31E-04
34	GO:0006401: RNA catabolic process	8.54E-04
35	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	8.54E-04
36	GO:0000209: protein polyubiquitination	9.27E-04
37	GO:0006605: protein targeting	9.81E-04
38	GO:0052543: callose deposition in cell wall	9.81E-04
39	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.07E-03
40	GO:0007389: pattern specification process	1.11E-03
41	GO:0030968: endoplasmic reticulum unfolded protein response	1.11E-03
42	GO:0009699: phenylpropanoid biosynthetic process	1.11E-03
43	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	1.11E-03
44	GO:0009880: embryonic pattern specification	1.11E-03
45	GO:0048193: Golgi vesicle transport	1.11E-03
46	GO:0010224: response to UV-B	1.22E-03
47	GO:0090305: nucleic acid phosphodiester bond hydrolysis	1.25E-03
48	GO:0048589: developmental growth	1.25E-03
49	GO:0042761: very long-chain fatty acid biosynthetic process	1.40E-03
50	GO:2000280: regulation of root development	1.40E-03
51	GO:0008202: steroid metabolic process	1.40E-03
52	GO:0051453: regulation of intracellular pH	1.40E-03
53	GO:0010018: far-red light signaling pathway	1.40E-03
54	GO:0048354: mucilage biosynthetic process involved in seed coat development	1.40E-03
55	GO:0015031: protein transport	1.48E-03
56	GO:0048829: root cap development	1.55E-03
57	GO:0006298: mismatch repair	1.55E-03
58	GO:0072593: reactive oxygen species metabolic process	1.70E-03
59	GO:0071365: cellular response to auxin stimulus	1.86E-03
60	GO:0006312: mitotic recombination	1.86E-03
61	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	2.03E-03
62	GO:0055046: microgametogenesis	2.03E-03
63	GO:0009887: animal organ morphogenesis	2.20E-03
64	GO:0048467: gynoecium development	2.20E-03
65	GO:0009845: seed germination	2.24E-03
66	GO:0009555: pollen development	2.29E-03
67	GO:0009225: nucleotide-sugar metabolic process	2.38E-03
68	GO:0042753: positive regulation of circadian rhythm	2.56E-03
69	GO:0034976: response to endoplasmic reticulum stress	2.56E-03
70	GO:0061077: chaperone-mediated protein folding	3.12E-03
71	GO:0080092: regulation of pollen tube growth	3.32E-03
72	GO:0009561: megagametogenesis	3.73E-03
73	GO:0010118: stomatal movement	4.15E-03
74	GO:0008360: regulation of cell shape	4.37E-03
75	GO:0006814: sodium ion transport	4.59E-03
76	GO:0009860: pollen tube growth	4.71E-03
77	GO:0009556: microsporogenesis	4.81E-03
78	GO:0006891: intra-Golgi vesicle-mediated transport	5.04E-03
79	GO:0080156: mitochondrial mRNA modification	5.04E-03
80	GO:0009630: gravitropism	5.28E-03
81	GO:0007264: small GTPase mediated signal transduction	5.28E-03
82	GO:0009639: response to red or far red light	5.75E-03
83	GO:0006904: vesicle docking involved in exocytosis	6.00E-03
84	GO:0071805: potassium ion transmembrane transport	6.00E-03
85	GO:0016579: protein deubiquitination	6.25E-03
86	GO:0051607: defense response to virus	6.25E-03
87	GO:0006468: protein phosphorylation	6.59E-03
88	GO:0006886: intracellular protein transport	6.69E-03
89	GO:0009816: defense response to bacterium, incompatible interaction	6.75E-03
90	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	6.75E-03
91	GO:0009817: defense response to fungus, incompatible interaction	7.81E-03
92	GO:0048364: root development	8.34E-03
93	GO:0006499: N-terminal protein myristoylation	8.37E-03
94	GO:0009867: jasmonic acid mediated signaling pathway	9.22E-03
95	GO:0006887: exocytosis	1.04E-02
96	GO:0006631: fatty acid metabolic process	1.04E-02
97	GO:0009734: auxin-activated signaling pathway	1.13E-02
98	GO:0009736: cytokinin-activated signaling pathway	1.36E-02
99	GO:0009809: lignin biosynthetic process	1.36E-02
100	GO:0009585: red, far-red light phototransduction	1.36E-02
101	GO:0009738: abscisic acid-activated signaling pathway	1.38E-02
102	GO:0051603: proteolysis involved in cellular protein catabolic process	1.39E-02
103	GO:0007165: signal transduction	1.42E-02
104	GO:0035556: intracellular signal transduction	1.50E-02
105	GO:0006096: glycolytic process	1.53E-02
106	GO:0048316: seed development	1.57E-02
107	GO:0018105: peptidyl-serine phosphorylation	1.78E-02
108	GO:0051726: regulation of cell cycle	1.82E-02
109	GO:0009742: brassinosteroid mediated signaling pathway	1.82E-02
110	GO:0009790: embryo development	2.29E-02
111	GO:0006633: fatty acid biosynthetic process	2.41E-02
112	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.79E-02
113	GO:0009414: response to water deprivation	2.82E-02
114	GO:0006470: protein dephosphorylation	2.83E-02
115	GO:0009826: unidimensional cell growth	3.42E-02
116	GO:0009723: response to ethylene	3.90E-02
117	GO:0046777: protein autophosphorylation	4.30E-02
118	GO:0045454: cell redox homeostasis	4.65E-02
119	GO:0006869: lipid transport	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0005092: GDP-dissociation inhibitor activity	0.00E+00
2	GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity	0.00E+00
3	GO:0046424: ferulate 5-hydroxylase activity	0.00E+00
4	GO:0008802: betaine-aldehyde dehydrogenase activity	4.74E-05
5	GO:0005093: Rab GDP-dissociation inhibitor activity	2.00E-04
6	GO:0005047: signal recognition particle binding	2.00E-04
7	GO:0035198: miRNA binding	2.94E-04
8	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	2.94E-04
9	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	5.00E-04
10	GO:0017137: Rab GTPase binding	5.00E-04
11	GO:0004029: aldehyde dehydrogenase (NAD) activity	6.13E-04
12	GO:0030983: mismatched DNA binding	6.13E-04
13	GO:0048040: UDP-glucuronate decarboxylase activity	6.13E-04
14	GO:0003697: single-stranded DNA binding	7.02E-04
15	GO:0070403: NAD+ binding	7.31E-04
16	GO:0102391: decanoate--CoA ligase activity	7.31E-04
17	GO:0004467: long-chain fatty acid-CoA ligase activity	8.54E-04
18	GO:0005524: ATP binding	9.14E-04
19	GO:0030674: protein binding, bridging	9.81E-04
20	GO:0008142: oxysterol binding	1.11E-03
21	GO:0003843: 1,3-beta-D-glucan synthase activity	1.11E-03
22	GO:0004630: phospholipase D activity	1.11E-03
23	GO:0005267: potassium channel activity	1.11E-03
24	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	1.11E-03
25	GO:0003924: GTPase activity	1.12E-03
26	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	1.40E-03
27	GO:0004713: protein tyrosine kinase activity	1.55E-03
28	GO:0015386: potassium:proton antiporter activity	1.70E-03
29	GO:0019888: protein phosphatase regulator activity	2.03E-03
30	GO:0031624: ubiquitin conjugating enzyme binding	2.20E-03
31	GO:0004725: protein tyrosine phosphatase activity	2.56E-03
32	GO:0005528: FK506 binding	2.74E-03
33	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	3.12E-03
34	GO:0003756: protein disulfide isomerase activity	3.73E-03
35	GO:0008536: Ran GTPase binding	4.37E-03
36	GO:0016853: isomerase activity	4.59E-03
37	GO:0004843: thiol-dependent ubiquitin-specific protease activity	5.04E-03
38	GO:0004518: nuclease activity	5.28E-03
39	GO:0015385: sodium:proton antiporter activity	5.52E-03
40	GO:0061630: ubiquitin protein ligase activity	5.70E-03
41	GO:0009931: calcium-dependent protein serine/threonine kinase activity	7.01E-03
42	GO:0004683: calmodulin-dependent protein kinase activity	7.28E-03
43	GO:0005096: GTPase activator activity	8.09E-03
44	GO:0003729: mRNA binding	9.27E-03
45	GO:0004712: protein serine/threonine/tyrosine kinase activity	9.80E-03
46	GO:0004674: protein serine/threonine kinase activity	1.15E-02
47	GO:0043621: protein self-association	1.16E-02
48	GO:0035091: phosphatidylinositol binding	1.16E-02
49	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.23E-02
50	GO:0016887: ATPase activity	1.24E-02
51	GO:0000166: nucleotide binding	1.42E-02
52	GO:0016874: ligase activity	1.67E-02
53	GO:0016746: transferase activity, transferring acyl groups	1.78E-02
54	GO:0005525: GTP binding	2.34E-02
55	GO:0005515: protein binding	2.94E-02
56	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.05E-02
57	GO:0004842: ubiquitin-protein transferase activity	3.98E-02
58	GO:0004497: monooxygenase activity	4.09E-02
59	GO:0004672: protein kinase activity	4.23E-02
60	GO:0042803: protein homodimerization activity	4.81E-02
61	GO:0004871: signal transducer activity	4.81E-02
62	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0005785: signal recognition particle receptor complex	0.00E+00
2	GO:0008305: integrin complex	0.00E+00
3	GO:0071561: nucleus-vacuole junction	0.00E+00
4	GO:0032389: MutLalpha complex	4.74E-05
5	GO:0034271: phosphatidylinositol 3-kinase complex, class III, type I	4.74E-05
6	GO:0005712: chiasma	4.74E-05
7	GO:0034272: phosphatidylinositol 3-kinase complex, class III, type II	4.74E-05
8	GO:0045254: pyruvate dehydrogenase complex	1.17E-04
9	GO:0005968: Rab-protein geranylgeranyltransferase complex	2.94E-04
10	GO:0000145: exocyst	3.19E-04
11	GO:0032580: Golgi cisterna membrane	3.63E-04
12	GO:0005783: endoplasmic reticulum	3.84E-04
13	GO:0000795: synaptonemal complex	5.00E-04
14	GO:0030173: integral component of Golgi membrane	7.31E-04
15	GO:0005794: Golgi apparatus	9.50E-04
16	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	1.11E-03
17	GO:0000148: 1,3-beta-D-glucan synthase complex	1.11E-03
18	GO:0030125: clathrin vesicle coat	1.55E-03
19	GO:0005886: plasma membrane	1.66E-03
20	GO:0005829: cytosol	2.31E-03
21	GO:0005634: nucleus	3.84E-03
22	GO:0030136: clathrin-coated vesicle	3.93E-03
23	GO:0000790: nuclear chromatin	3.93E-03
24	GO:0005770: late endosome	4.37E-03
25	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	4.80E-03
26	GO:0005768: endosome	4.90E-03
27	GO:0009506: plasmodesma	5.24E-03
28	GO:0000932: P-body	6.50E-03
29	GO:0005788: endoplasmic reticulum lumen	6.75E-03
30	GO:0005774: vacuolar membrane	6.78E-03
31	GO:0000151: ubiquitin ligase complex	7.81E-03
32	GO:0005643: nuclear pore	7.81E-03
33	GO:0005737: cytoplasm	9.27E-03
34	GO:0031902: late endosome membrane	1.04E-02
35	GO:0005856: cytoskeleton	1.20E-02
36	GO:0000502: proteasome complex	1.36E-02
37	GO:0005635: nuclear envelope	1.43E-02
38	GO:0010008: endosome membrane	1.57E-02
39	GO:0005834: heterotrimeric G-protein complex	1.60E-02
40	GO:0005654: nucleoplasm	2.01E-02
41	GO:0009524: phragmoplast	2.13E-02
42	GO:0005802: trans-Golgi network	2.28E-02
43	GO:0005759: mitochondrial matrix	2.41E-02
44	GO:0005618: cell wall	3.19E-02
45	GO:0016021: integral component of membrane	4.69E-02