co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G03940

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:0070125: mitochondrial translational elongation	0.00E+00
3	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
4	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
5	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
6	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
7	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
8	GO:0016553: base conversion or substitution editing	0.00E+00
9	GO:0015995: chlorophyll biosynthetic process	9.20E-07
10	GO:0009658: chloroplast organization	1.74E-06
11	GO:0006353: DNA-templated transcription, termination	2.78E-06
12	GO:0032543: mitochondrial translation	4.65E-05
13	GO:0006418: tRNA aminoacylation for protein translation	5.18E-05
14	GO:0006457: protein folding	1.39E-04
15	GO:0048564: photosystem I assembly	1.62E-04
16	GO:0042255: ribosome assembly	1.62E-04
17	GO:0006426: glycyl-tRNA aminoacylation	1.98E-04
18	GO:0042759: long-chain fatty acid biosynthetic process	1.98E-04
19	GO:0042371: vitamin K biosynthetic process	1.98E-04
20	GO:0051641: cellular localization	1.98E-04
21	GO:0006430: lysyl-tRNA aminoacylation	1.98E-04
22	GO:0043489: RNA stabilization	1.98E-04
23	GO:0032544: plastid translation	2.01E-04
24	GO:0071482: cellular response to light stimulus	2.01E-04
25	GO:0009793: embryo development ending in seed dormancy	2.41E-04
26	GO:0000373: Group II intron splicing	2.45E-04
27	GO:0006412: translation	2.47E-04
28	GO:0010027: thylakoid membrane organization	2.88E-04
29	GO:0006779: porphyrin-containing compound biosynthetic process	2.92E-04
30	GO:0006782: protoporphyrinogen IX biosynthetic process	3.43E-04
31	GO:0015979: photosynthesis	3.77E-04
32	GO:0006352: DNA-templated transcription, initiation	3.97E-04
33	GO:0018026: peptidyl-lysine monomethylation	4.43E-04
34	GO:0006568: tryptophan metabolic process	4.43E-04
35	GO:0010270: photosystem II oxygen evolving complex assembly	4.43E-04
36	GO:0006695: cholesterol biosynthetic process	4.43E-04
37	GO:0034755: iron ion transmembrane transport	4.43E-04
38	GO:0046168: glycerol-3-phosphate catabolic process	7.22E-04
39	GO:0007010: cytoskeleton organization	8.01E-04
40	GO:0006986: response to unfolded protein	1.03E-03
41	GO:2001141: regulation of RNA biosynthetic process	1.03E-03
42	GO:0009413: response to flooding	1.03E-03
43	GO:0051085: chaperone mediated protein folding requiring cofactor	1.03E-03
44	GO:0010239: chloroplast mRNA processing	1.03E-03
45	GO:0006241: CTP biosynthetic process	1.03E-03
46	GO:0019048: modulation by virus of host morphology or physiology	1.03E-03
47	GO:0006072: glycerol-3-phosphate metabolic process	1.03E-03
48	GO:0006165: nucleoside diphosphate phosphorylation	1.03E-03
49	GO:0006228: UTP biosynthetic process	1.03E-03
50	GO:0031048: chromatin silencing by small RNA	1.03E-03
51	GO:0010088: phloem development	1.03E-03
52	GO:0006424: glutamyl-tRNA aminoacylation	1.03E-03
53	GO:0016556: mRNA modification	1.03E-03
54	GO:0071483: cellular response to blue light	1.37E-03
55	GO:0006183: GTP biosynthetic process	1.37E-03
56	GO:0000914: phragmoplast assembly	1.37E-03
57	GO:0051567: histone H3-K9 methylation	1.37E-03
58	GO:0007020: microtubule nucleation	1.37E-03
59	GO:0031122: cytoplasmic microtubule organization	1.37E-03
60	GO:0000413: protein peptidyl-prolyl isomerization	1.45E-03
61	GO:0006564: L-serine biosynthetic process	1.74E-03
62	GO:0010236: plastoquinone biosynthetic process	1.74E-03
63	GO:0007094: mitotic spindle assembly checkpoint	1.74E-03
64	GO:0046785: microtubule polymerization	1.74E-03
65	GO:0032502: developmental process	2.04E-03
66	GO:0016458: gene silencing	2.14E-03
67	GO:0006014: D-ribose metabolic process	2.14E-03
68	GO:0042549: photosystem II stabilization	2.14E-03
69	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.14E-03
70	GO:0000470: maturation of LSU-rRNA	2.14E-03
71	GO:0006828: manganese ion transport	2.14E-03
72	GO:0032973: amino acid export	2.14E-03
73	GO:0042793: transcription from plastid promoter	2.14E-03
74	GO:0048280: vesicle fusion with Golgi apparatus	2.57E-03
75	GO:0042372: phylloquinone biosynthetic process	2.57E-03
76	GO:1901259: chloroplast rRNA processing	2.57E-03
77	GO:0010103: stomatal complex morphogenesis	3.03E-03
78	GO:0045995: regulation of embryonic development	3.03E-03
79	GO:0009772: photosynthetic electron transport in photosystem II	3.03E-03
80	GO:0043090: amino acid import	3.03E-03
81	GO:0045292: mRNA cis splicing, via spliceosome	3.51E-03
82	GO:0009451: RNA modification	3.53E-03
83	GO:0048481: plant ovule development	3.59E-03
84	GO:0009657: plastid organization	4.02E-03
85	GO:0006783: heme biosynthetic process	4.54E-03
86	GO:0045337: farnesyl diphosphate biosynthetic process	4.54E-03
87	GO:0080144: amino acid homeostasis	4.54E-03
88	GO:0033384: geranyl diphosphate biosynthetic process	4.54E-03
89	GO:0006508: proteolysis	4.86E-03
90	GO:1900865: chloroplast RNA modification	5.10E-03
91	GO:0030001: metal ion transport	5.17E-03
92	GO:0030422: production of siRNA involved in RNA interference	5.67E-03
93	GO:0006896: Golgi to vacuole transport	5.67E-03
94	GO:0042254: ribosome biogenesis	6.12E-03
95	GO:0006879: cellular iron ion homeostasis	6.27E-03
96	GO:0006816: calcium ion transport	6.27E-03
97	GO:0006415: translational termination	6.27E-03
98	GO:0009073: aromatic amino acid family biosynthetic process	6.27E-03
99	GO:0006813: potassium ion transport	7.88E-03
100	GO:0048768: root hair cell tip growth	8.19E-03
101	GO:0010207: photosystem II assembly	8.19E-03
102	GO:0090351: seedling development	8.87E-03
103	GO:0010025: wax biosynthetic process	9.57E-03
104	GO:0045454: cell redox homeostasis	9.88E-03
105	GO:0008299: isoprenoid biosynthetic process	1.10E-02
106	GO:0007017: microtubule-based process	1.10E-02
107	GO:0009624: response to nematode	1.12E-02
108	GO:0006306: DNA methylation	1.18E-02
109	GO:0051321: meiotic cell cycle	1.18E-02
110	GO:0016114: terpenoid biosynthetic process	1.18E-02
111	GO:0009411: response to UV	1.34E-02
112	GO:0042147: retrograde transport, endosome to Golgi	1.50E-02
113	GO:0008033: tRNA processing	1.59E-02
114	GO:0010051: xylem and phloem pattern formation	1.59E-02
115	GO:0042335: cuticle development	1.59E-02
116	GO:0009790: embryo development	1.65E-02
117	GO:0006342: chromatin silencing	1.67E-02
118	GO:0007018: microtubule-based movement	1.76E-02
119	GO:0007059: chromosome segregation	1.76E-02
120	GO:0019252: starch biosynthetic process	1.85E-02
121	GO:0006623: protein targeting to vacuole	1.85E-02
122	GO:0006891: intra-Golgi vesicle-mediated transport	1.94E-02
123	GO:0080156: mitochondrial mRNA modification	1.94E-02
124	GO:0071805: potassium ion transmembrane transport	2.33E-02
125	GO:0008380: RNA splicing	2.33E-02
126	GO:0009735: response to cytokinin	2.38E-02
127	GO:0051607: defense response to virus	2.42E-02
128	GO:0000910: cytokinesis	2.42E-02
129	GO:0009816: defense response to bacterium, incompatible interaction	2.63E-02
130	GO:0006888: ER to Golgi vesicle-mediated transport	2.84E-02
131	GO:0009832: plant-type cell wall biogenesis	3.16E-02
132	GO:0006811: ion transport	3.27E-02
133	GO:0007568: aging	3.38E-02
134	GO:0009631: cold acclimation	3.38E-02
135	GO:0048366: leaf development	3.55E-02
136	GO:0016051: carbohydrate biosynthetic process	3.61E-02
137	GO:0009637: response to blue light	3.61E-02
138	GO:0045087: innate immune response	3.61E-02
139	GO:0042542: response to hydrogen peroxide	4.20E-02
140	GO:0010114: response to red light	4.32E-02

Rank	GO Term	Adjusted P value
1	GO:0004823: leucine-tRNA ligase activity	0.00E+00
2	GO:0047661: amino-acid racemase activity	0.00E+00
3	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
4	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
5	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
6	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
7	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
8	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
9	GO:0019843: rRNA binding	5.05E-12
10	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.71E-07
11	GO:0003735: structural constituent of ribosome	5.43E-06
12	GO:0002161: aminoacyl-tRNA editing activity	6.80E-06
13	GO:0008237: metallopeptidase activity	1.39E-05
14	GO:0001053: plastid sigma factor activity	2.88E-05
15	GO:0016987: sigma factor activity	2.88E-05
16	GO:0051087: chaperone binding	5.18E-05
17	GO:0004176: ATP-dependent peptidase activity	6.01E-05
18	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	9.52E-05
19	GO:0051920: peroxiredoxin activity	9.52E-05
20	GO:0004812: aminoacyl-tRNA ligase activity	1.02E-04
21	GO:0016209: antioxidant activity	1.62E-04
22	GO:0004820: glycine-tRNA ligase activity	1.98E-04
23	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	1.98E-04
24	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.98E-04
25	GO:0004824: lysine-tRNA ligase activity	1.98E-04
26	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.98E-04
27	GO:0004655: porphobilinogen synthase activity	1.98E-04
28	GO:0003867: 4-aminobutyrate transaminase activity	1.98E-04
29	GO:0004617: phosphoglycerate dehydrogenase activity	4.43E-04
30	GO:0000774: adenyl-nucleotide exchange factor activity	4.43E-04
31	GO:0016630: protochlorophyllide reductase activity	4.43E-04
32	GO:0008266: poly(U) RNA binding	5.82E-04
33	GO:0030267: glyoxylate reductase (NADP) activity	7.22E-04
34	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	7.22E-04
35	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	7.22E-04
36	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	7.22E-04
37	GO:0005528: FK506 binding	8.01E-04
38	GO:0043621: protein self-association	8.42E-04
39	GO:0004550: nucleoside diphosphate kinase activity	1.03E-03
40	GO:0008097: 5S rRNA binding	1.03E-03
41	GO:0035197: siRNA binding	1.03E-03
42	GO:0016851: magnesium chelatase activity	1.03E-03
43	GO:0016149: translation release factor activity, codon specific	1.03E-03
44	GO:0003727: single-stranded RNA binding	1.24E-03
45	GO:0004659: prenyltransferase activity	1.37E-03
46	GO:0016279: protein-lysine N-methyltransferase activity	1.37E-03
47	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.37E-03
48	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.74E-03
49	GO:0003959: NADPH dehydrogenase activity	1.74E-03
50	GO:0030414: peptidase inhibitor activity	1.74E-03
51	GO:0003723: RNA binding	2.27E-03
52	GO:0004747: ribokinase activity	2.57E-03
53	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.57E-03
54	GO:0016831: carboxy-lyase activity	3.03E-03
55	GO:0004519: endonuclease activity	3.21E-03
56	GO:0008236: serine-type peptidase activity	3.41E-03
57	GO:0004033: aldo-keto reductase (NADP) activity	3.51E-03
58	GO:0008865: fructokinase activity	3.51E-03
59	GO:0008017: microtubule binding	3.64E-03
60	GO:0004222: metalloendopeptidase activity	3.95E-03
61	GO:0003747: translation release factor activity	4.54E-03
62	GO:0004337: geranyltranstransferase activity	4.54E-03
63	GO:0003746: translation elongation factor activity	4.54E-03
64	GO:0005509: calcium ion binding	4.89E-03
65	GO:0047617: acyl-CoA hydrolase activity	5.10E-03
66	GO:0005381: iron ion transmembrane transporter activity	5.10E-03
67	GO:0005384: manganese ion transmembrane transporter activity	5.10E-03
68	GO:0004601: peroxidase activity	5.98E-03
69	GO:0004161: dimethylallyltranstransferase activity	6.27E-03
70	GO:0004521: endoribonuclease activity	6.89E-03
71	GO:0000049: tRNA binding	6.89E-03
72	GO:0051287: NAD binding	7.08E-03
73	GO:0015095: magnesium ion transmembrane transporter activity	7.52E-03
74	GO:0008081: phosphoric diester hydrolase activity	7.52E-03
75	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	7.88E-03
76	GO:0003690: double-stranded DNA binding	8.16E-03
77	GO:0042803: protein homodimerization activity	1.05E-02
78	GO:0015079: potassium ion transmembrane transporter activity	1.10E-02
79	GO:0008324: cation transmembrane transporter activity	1.10E-02
80	GO:0051082: unfolded protein binding	1.12E-02
81	GO:0005507: copper ion binding	1.15E-02
82	GO:0008080: N-acetyltransferase activity	1.67E-02
83	GO:0016887: ATPase activity	2.24E-02
84	GO:0005200: structural constituent of cytoskeleton	2.33E-02
85	GO:0016597: amino acid binding	2.42E-02
86	GO:0016788: hydrolase activity, acting on ester bonds	3.08E-02
87	GO:0003729: mRNA binding	3.51E-02
88	GO:0005524: ATP binding	3.60E-02
89	GO:0000149: SNARE binding	3.84E-02
90	GO:0005484: SNAP receptor activity	4.32E-02
91	GO:0005198: structural molecule activity	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.82E-45
2	GO:0009570: chloroplast stroma	1.18E-36
3	GO:0009941: chloroplast envelope	1.23E-22
4	GO:0009579: thylakoid	5.48E-16
5	GO:0009543: chloroplast thylakoid lumen	3.34E-15
6	GO:0031977: thylakoid lumen	3.17E-14
7	GO:0009535: chloroplast thylakoid membrane	2.27E-10
8	GO:0009534: chloroplast thylakoid	1.46E-08
9	GO:0005840: ribosome	2.32E-06
10	GO:0000311: plastid large ribosomal subunit	1.69E-05
11	GO:0031969: chloroplast membrane	3.97E-05
12	GO:0009654: photosystem II oxygen evolving complex	5.18E-05
13	GO:0019898: extrinsic component of membrane	1.57E-04
14	GO:0009547: plastid ribosome	1.98E-04
15	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.98E-04
16	GO:0009295: nucleoid	2.46E-04
17	GO:0000427: plastid-encoded plastid RNA polymerase complex	4.43E-04
18	GO:0005759: mitochondrial matrix	5.07E-04
19	GO:0009508: plastid chromosome	5.18E-04
20	GO:0010007: magnesium chelatase complex	7.22E-04
21	GO:0005719: nuclear euchromatin	1.03E-03
22	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.03E-03
23	GO:0005828: kinetochore microtubule	1.37E-03
24	GO:0000930: gamma-tubulin complex	1.37E-03
25	GO:0000776: kinetochore	1.74E-03
26	GO:0000793: condensed chromosome	2.14E-03
27	GO:0000777: condensed chromosome kinetochore	2.57E-03
28	GO:0010005: cortical microtubule, transverse to long axis	2.57E-03
29	GO:0005762: mitochondrial large ribosomal subunit	2.57E-03
30	GO:0030529: intracellular ribonucleoprotein complex	2.76E-03
31	GO:0000794: condensed nuclear chromosome	3.03E-03
32	GO:0009533: chloroplast stromal thylakoid	3.03E-03
33	GO:0012507: ER to Golgi transport vesicle membrane	3.51E-03
34	GO:0045298: tubulin complex	4.54E-03
35	GO:0046658: anchored component of plasma membrane	4.90E-03
36	GO:0015030: Cajal body	5.10E-03
37	GO:0005876: spindle microtubule	5.10E-03
38	GO:0005874: microtubule	7.52E-03
39	GO:0005938: cell cortex	7.52E-03
40	GO:0009536: plastid	8.04E-03
41	GO:0000312: plastid small ribosomal subunit	8.19E-03
42	GO:0030095: chloroplast photosystem II	8.19E-03
43	GO:0005875: microtubule associated complex	9.57E-03
44	GO:0042651: thylakoid membrane	1.10E-02
45	GO:0043231: intracellular membrane-bounded organelle	1.46E-02
46	GO:0009524: phragmoplast	1.49E-02
47	GO:0005871: kinesin complex	1.50E-02
48	GO:0005739: mitochondrion	1.98E-02
49	GO:0010319: stromule	2.33E-02
50	GO:0016020: membrane	2.85E-02
51	GO:0005819: spindle	3.84E-02
52	GO:0022625: cytosolic large ribosomal subunit	3.93E-02
53	GO:0031201: SNARE complex	4.08E-02
54	GO:0031902: late endosome membrane	4.08E-02