co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G03630

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010398: xylogalacturonan metabolic process	0.00E+00
2	GO:0033542: fatty acid beta-oxidation, unsaturated, even number	0.00E+00
3	GO:0006182: cGMP biosynthetic process	0.00E+00
4	GO:0009448: gamma-aminobutyric acid metabolic process	0.00E+00
5	GO:0042891: antibiotic transport	0.00E+00
6	GO:1901535: regulation of DNA demethylation	0.00E+00
7	GO:0006105: succinate metabolic process	0.00E+00
8	GO:0019484: beta-alanine catabolic process	0.00E+00
9	GO:0000162: tryptophan biosynthetic process	1.96E-10
10	GO:0009617: response to bacterium	6.87E-08
11	GO:0046686: response to cadmium ion	4.84E-07
12	GO:0009682: induced systemic resistance	1.72E-05
13	GO:0052544: defense response by callose deposition in cell wall	1.72E-05
14	GO:0016998: cell wall macromolecule catabolic process	7.61E-05
15	GO:0009759: indole glucosinolate biosynthetic process	8.18E-05
16	GO:0071456: cellular response to hypoxia	8.75E-05
17	GO:0009851: auxin biosynthetic process	1.95E-04
18	GO:0006540: glutamate decarboxylation to succinate	2.20E-04
19	GO:0080120: CAAX-box protein maturation	2.20E-04
20	GO:0035266: meristem growth	2.20E-04
21	GO:0009450: gamma-aminobutyric acid catabolic process	2.20E-04
22	GO:0071586: CAAX-box protein processing	2.20E-04
23	GO:0007292: female gamete generation	2.20E-04
24	GO:0009623: response to parasitic fungus	2.20E-04
25	GO:0010941: regulation of cell death	2.20E-04
26	GO:0010726: positive regulation of hydrogen peroxide metabolic process	2.20E-04
27	GO:0009700: indole phytoalexin biosynthetic process	2.20E-04
28	GO:0009865: pollen tube adhesion	2.20E-04
29	GO:0009808: lignin metabolic process	2.36E-04
30	GO:0006032: chitin catabolic process	4.00E-04
31	GO:0000272: polysaccharide catabolic process	4.63E-04
32	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	4.90E-04
33	GO:0019441: tryptophan catabolic process to kynurenine	4.90E-04
34	GO:0015914: phospholipid transport	4.90E-04
35	GO:0010033: response to organic substance	4.90E-04
36	GO:0002215: defense response to nematode	4.90E-04
37	GO:0051788: response to misfolded protein	4.90E-04
38	GO:0006541: glutamine metabolic process	6.76E-04
39	GO:0042343: indole glucosinolate metabolic process	7.56E-04
40	GO:0051176: positive regulation of sulfur metabolic process	7.98E-04
41	GO:0042256: mature ribosome assembly	7.98E-04
42	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	7.98E-04
43	GO:0060968: regulation of gene silencing	7.98E-04
44	GO:0051091: positive regulation of sequence-specific DNA binding transcription factor activity	7.98E-04
45	GO:1902626: assembly of large subunit precursor of preribosome	7.98E-04
46	GO:0000289: nuclear-transcribed mRNA poly(A) tail shortening	7.98E-04
47	GO:0009636: response to toxic substance	1.07E-03
48	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.14E-03
49	GO:0019438: aromatic compound biosynthetic process	1.14E-03
50	GO:0006020: inositol metabolic process	1.14E-03
51	GO:0002239: response to oomycetes	1.14E-03
52	GO:0016226: iron-sulfur cluster assembly	1.22E-03
53	GO:0071215: cellular response to abscisic acid stimulus	1.33E-03
54	GO:0006813: potassium ion transport	1.34E-03
55	GO:0048830: adventitious root development	1.51E-03
56	GO:1902584: positive regulation of response to water deprivation	1.51E-03
57	GO:0006536: glutamate metabolic process	1.51E-03
58	GO:0000460: maturation of 5.8S rRNA	1.51E-03
59	GO:0010107: potassium ion import	1.51E-03
60	GO:0042273: ribosomal large subunit biogenesis	1.51E-03
61	GO:0010600: regulation of auxin biosynthetic process	1.51E-03
62	GO:0006564: L-serine biosynthetic process	1.93E-03
63	GO:0007029: endoplasmic reticulum organization	1.93E-03
64	GO:0030308: negative regulation of cell growth	1.93E-03
65	GO:0006090: pyruvate metabolic process	1.93E-03
66	GO:0010200: response to chitin	2.08E-03
67	GO:0042742: defense response to bacterium	2.12E-03
68	GO:0002229: defense response to oomycetes	2.23E-03
69	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	2.38E-03
70	GO:0010942: positive regulation of cell death	2.38E-03
71	GO:0048827: phyllome development	2.38E-03
72	GO:0048232: male gamete generation	2.38E-03
73	GO:0000470: maturation of LSU-rRNA	2.38E-03
74	GO:0043248: proteasome assembly	2.38E-03
75	GO:0009267: cellular response to starvation	2.38E-03
76	GO:0006796: phosphate-containing compound metabolic process	2.38E-03
77	GO:0000054: ribosomal subunit export from nucleus	2.86E-03
78	GO:0009648: photoperiodism	2.86E-03
79	GO:0001666: response to hypoxia	3.21E-03
80	GO:1902074: response to salt	3.36E-03
81	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	3.36E-03
82	GO:0080027: response to herbivore	3.36E-03
83	GO:0009395: phospholipid catabolic process	3.36E-03
84	GO:0010078: maintenance of root meristem identity	3.90E-03
85	GO:0006102: isocitrate metabolic process	3.90E-03
86	GO:0016559: peroxisome fission	3.90E-03
87	GO:0009061: anaerobic respiration	3.90E-03
88	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	3.90E-03
89	GO:0009819: drought recovery	3.90E-03
90	GO:0055114: oxidation-reduction process	3.98E-03
91	GO:0009817: defense response to fungus, incompatible interaction	4.19E-03
92	GO:0010311: lateral root formation	4.40E-03
93	GO:0044030: regulation of DNA methylation	4.47E-03
94	GO:0009699: phenylpropanoid biosynthetic process	4.47E-03
95	GO:0006002: fructose 6-phosphate metabolic process	4.47E-03
96	GO:0010120: camalexin biosynthetic process	4.47E-03
97	GO:0009407: toxin catabolic process	4.61E-03
98	GO:0010112: regulation of systemic acquired resistance	5.06E-03
99	GO:0007338: single fertilization	5.06E-03
100	GO:0009051: pentose-phosphate shunt, oxidative branch	5.06E-03
101	GO:0034765: regulation of ion transmembrane transport	5.06E-03
102	GO:0090333: regulation of stomatal closure	5.06E-03
103	GO:0006099: tricarboxylic acid cycle	5.54E-03
104	GO:0008202: steroid metabolic process	5.68E-03
105	GO:0016573: histone acetylation	5.68E-03
106	GO:0009688: abscisic acid biosynthetic process	6.32E-03
107	GO:0043069: negative regulation of programmed cell death	6.32E-03
108	GO:0048829: root cap development	6.32E-03
109	GO:0009641: shade avoidance	6.32E-03
110	GO:0007064: mitotic sister chromatid cohesion	6.32E-03
111	GO:0030148: sphingolipid biosynthetic process	6.98E-03
112	GO:0009684: indoleacetic acid biosynthetic process	6.98E-03
113	GO:0010015: root morphogenesis	6.98E-03
114	GO:0009698: phenylpropanoid metabolic process	6.98E-03
115	GO:0010105: negative regulation of ethylene-activated signaling pathway	7.68E-03
116	GO:0071365: cellular response to auxin stimulus	7.68E-03
117	GO:0000266: mitochondrial fission	7.68E-03
118	GO:0002213: defense response to insect	7.68E-03
119	GO:0006108: malate metabolic process	8.39E-03
120	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	8.39E-03
121	GO:0009723: response to ethylene	8.77E-03
122	GO:0009933: meristem structural organization	9.13E-03
123	GO:0007034: vacuolar transport	9.13E-03
124	GO:0090351: seedling development	9.90E-03
125	GO:0007031: peroxisome organization	9.90E-03
126	GO:0005985: sucrose metabolic process	9.90E-03
127	GO:0006096: glycolytic process	1.09E-02
128	GO:0048367: shoot system development	1.13E-02
129	GO:2000377: regulation of reactive oxygen species metabolic process	1.15E-02
130	GO:0080147: root hair cell development	1.15E-02
131	GO:0009626: plant-type hypersensitive response	1.16E-02
132	GO:0009695: jasmonic acid biosynthetic process	1.23E-02
133	GO:0051260: protein homooligomerization	1.32E-02
134	GO:0098542: defense response to other organism	1.32E-02
135	GO:0031408: oxylipin biosynthetic process	1.32E-02
136	GO:0030433: ubiquitin-dependent ERAD pathway	1.40E-02
137	GO:0009814: defense response, incompatible interaction	1.40E-02
138	GO:0071369: cellular response to ethylene stimulus	1.49E-02
139	GO:0032259: methylation	1.49E-02
140	GO:0009625: response to insect	1.49E-02
141	GO:0006012: galactose metabolic process	1.49E-02
142	GO:0010584: pollen exine formation	1.58E-02
143	GO:0042391: regulation of membrane potential	1.77E-02
144	GO:0050832: defense response to fungus	1.77E-02
145	GO:0006885: regulation of pH	1.87E-02
146	GO:0045489: pectin biosynthetic process	1.87E-02
147	GO:0010154: fruit development	1.87E-02
148	GO:0010183: pollen tube guidance	2.07E-02
149	GO:0009873: ethylene-activated signaling pathway	2.17E-02
150	GO:0000302: response to reactive oxygen species	2.17E-02
151	GO:0009651: response to salt stress	2.23E-02
152	GO:0010150: leaf senescence	2.28E-02
153	GO:0009630: gravitropism	2.28E-02
154	GO:0010583: response to cyclopentenone	2.28E-02
155	GO:0009451: RNA modification	2.33E-02
156	GO:0009567: double fertilization forming a zygote and endosperm	2.49E-02
157	GO:0019760: glucosinolate metabolic process	2.49E-02
158	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.55E-02
159	GO:0071805: potassium ion transmembrane transport	2.60E-02
160	GO:0007166: cell surface receptor signaling pathway	2.61E-02
161	GO:0051607: defense response to virus	2.71E-02
162	GO:0010468: regulation of gene expression	2.72E-02
163	GO:0009615: response to virus	2.82E-02
164	GO:0009627: systemic acquired resistance	3.05E-02
165	GO:0006950: response to stress	3.17E-02
166	GO:0008219: cell death	3.41E-02
167	GO:0048767: root hair elongation	3.53E-02
168	GO:0009813: flavonoid biosynthetic process	3.53E-02
169	GO:0006499: N-terminal protein myristoylation	3.66E-02
170	GO:0007568: aging	3.78E-02
171	GO:0045087: innate immune response	4.03E-02
172	GO:0080167: response to karrikin	4.36E-02
173	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.51E-02
174	GO:0006468: protein phosphorylation	4.61E-02
175	GO:0044550: secondary metabolite biosynthetic process	4.73E-02
176	GO:0010114: response to red light	4.83E-02
177	GO:0000209: protein polyubiquitination	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0010298: dihydrocamalexic acid decarboxylase activity	0.00E+00
2	GO:0034387: 4-aminobutyrate:pyruvate transaminase activity	0.00E+00
3	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
4	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
5	GO:0052642: lysophosphatidic acid phosphatase activity	0.00E+00
6	GO:0047634: agmatine N4-coumaroyltransferase activity	0.00E+00
7	GO:0004049: anthranilate synthase activity	8.31E-06
8	GO:0004834: tryptophan synthase activity	3.46E-05
9	GO:0008061: chitin binding	3.99E-05
10	GO:0005496: steroid binding	5.56E-05
11	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	2.20E-04
12	GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity	2.20E-04
13	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.20E-04
14	GO:0033984: indole-3-glycerol-phosphate lyase activity	2.20E-04
15	GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity	2.20E-04
16	GO:0003867: 4-aminobutyrate transaminase activity	2.20E-04
17	GO:0004568: chitinase activity	4.00E-04
18	GO:0008171: O-methyltransferase activity	4.00E-04
19	GO:0047209: coniferyl-alcohol glucosyltransferase activity	4.90E-04
20	GO:0032934: sterol binding	4.90E-04
21	GO:0045140: inositol phosphoceramide synthase activity	4.90E-04
22	GO:0004061: arylformamidase activity	4.90E-04
23	GO:0005506: iron ion binding	5.70E-04
24	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	6.26E-04
25	GO:0004383: guanylate cyclase activity	7.98E-04
26	GO:0016805: dipeptidase activity	7.98E-04
27	GO:0016595: glutamate binding	7.98E-04
28	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	7.98E-04
29	GO:0008430: selenium binding	7.98E-04
30	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	7.98E-04
31	GO:0004364: glutathione transferase activity	8.79E-04
32	GO:0004540: ribonuclease activity	1.12E-03
33	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.14E-03
34	GO:0043023: ribosomal large subunit binding	1.14E-03
35	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	1.51E-03
36	GO:0004737: pyruvate decarboxylase activity	1.51E-03
37	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.51E-03
38	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	1.51E-03
39	GO:0004470: malic enzyme activity	1.51E-03
40	GO:0004031: aldehyde oxidase activity	1.51E-03
41	GO:0050302: indole-3-acetaldehyde oxidase activity	1.51E-03
42	GO:0020037: heme binding	1.60E-03
43	GO:0045431: flavonol synthase activity	1.93E-03
44	GO:0008948: oxaloacetate decarboxylase activity	1.93E-03
45	GO:0035252: UDP-xylosyltransferase activity	2.38E-03
46	GO:0036402: proteasome-activating ATPase activity	2.38E-03
47	GO:0030976: thiamine pyrophosphate binding	2.38E-03
48	GO:0004029: aldehyde dehydrogenase (NAD) activity	2.38E-03
49	GO:0004656: procollagen-proline 4-dioxygenase activity	2.86E-03
50	GO:0005242: inward rectifier potassium channel activity	2.86E-03
51	GO:0051020: GTPase binding	2.86E-03
52	GO:0043295: glutathione binding	3.36E-03
53	GO:0004620: phospholipase activity	3.36E-03
54	GO:0016831: carboxy-lyase activity	3.36E-03
55	GO:0008235: metalloexopeptidase activity	3.36E-03
56	GO:0003872: 6-phosphofructokinase activity	3.36E-03
57	GO:0008143: poly(A) binding	3.36E-03
58	GO:0043022: ribosome binding	3.90E-03
59	GO:0004034: aldose 1-epimerase activity	3.90E-03
60	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.98E-03
61	GO:0019825: oxygen binding	4.00E-03
62	GO:0008142: oxysterol binding	4.47E-03
63	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.84E-03
64	GO:0016207: 4-coumarate-CoA ligase activity	5.06E-03
65	GO:0071949: FAD binding	5.06E-03
66	GO:0003746: translation elongation factor activity	5.30E-03
67	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	5.67E-03
68	GO:0030955: potassium ion binding	5.68E-03
69	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	5.68E-03
70	GO:0004743: pyruvate kinase activity	5.68E-03
71	GO:0008047: enzyme activator activity	6.32E-03
72	GO:0004713: protein tyrosine kinase activity	6.32E-03
73	GO:0004177: aminopeptidase activity	6.98E-03
74	GO:0047372: acylglycerol lipase activity	6.98E-03
75	GO:0000175: 3'-5'-exoribonuclease activity	8.39E-03
76	GO:0004022: alcohol dehydrogenase (NAD) activity	8.39E-03
77	GO:0004535: poly(A)-specific ribonuclease activity	9.13E-03
78	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	9.13E-03
79	GO:0031624: ubiquitin conjugating enzyme binding	9.13E-03
80	GO:0004175: endopeptidase activity	9.13E-03
81	GO:0017025: TBP-class protein binding	9.90E-03
82	GO:0061630: ubiquitin protein ligase activity	1.02E-02
83	GO:0051536: iron-sulfur cluster binding	1.15E-02
84	GO:0031418: L-ascorbic acid binding	1.15E-02
85	GO:0015079: potassium ion transmembrane transporter activity	1.23E-02
86	GO:0008408: 3'-5' exonuclease activity	1.32E-02
87	GO:0030246: carbohydrate binding	1.34E-02
88	GO:0016746: transferase activity, transferring acyl groups	1.35E-02
89	GO:0005451: monovalent cation:proton antiporter activity	1.77E-02
90	GO:0030551: cyclic nucleotide binding	1.77E-02
91	GO:0001085: RNA polymerase II transcription factor binding	1.87E-02
92	GO:0010181: FMN binding	1.97E-02
93	GO:0016853: isomerase activity	1.97E-02
94	GO:0015299: solute:proton antiporter activity	1.97E-02
95	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.12E-02
96	GO:0015385: sodium:proton antiporter activity	2.38E-02
97	GO:0016887: ATPase activity	2.73E-02
98	GO:0051213: dioxygenase activity	2.82E-02
99	GO:0042802: identical protein binding	2.90E-02
100	GO:0030247: polysaccharide binding	3.17E-02
101	GO:0008236: serine-type peptidase activity	3.29E-02
102	GO:0008168: methyltransferase activity	3.39E-02
103	GO:0000287: magnesium ion binding	3.46E-02
104	GO:0015238: drug transmembrane transporter activity	3.53E-02
105	GO:0004222: metalloendopeptidase activity	3.66E-02
106	GO:0016491: oxidoreductase activity	3.69E-02
107	GO:0003682: chromatin binding	3.73E-02
108	GO:0008270: zinc ion binding	3.74E-02
109	GO:0030145: manganese ion binding	3.78E-02
110	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.78E-02
111	GO:0050897: cobalt ion binding	3.78E-02
112	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.03E-02
113	GO:0050660: flavin adenine dinucleotide binding	4.07E-02
114	GO:0003993: acid phosphatase activity	4.16E-02
115	GO:0008233: peptidase activity	4.29E-02
116	GO:0004497: monooxygenase activity	4.36E-02
117	GO:0051539: 4 iron, 4 sulfur cluster binding	4.43E-02
118	GO:0003723: RNA binding	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0005829: cytosol	6.88E-06
2	GO:0005783: endoplasmic reticulum	3.25E-05
3	GO:0030687: preribosome, large subunit precursor	1.49E-04
4	GO:0016021: integral component of membrane	1.76E-04
5	GO:0030014: CCR4-NOT complex	2.20E-04
6	GO:0045252: oxoglutarate dehydrogenase complex	2.20E-04
7	GO:0005774: vacuolar membrane	3.65E-04
8	GO:0016020: membrane	4.44E-04
9	GO:0005950: anthranilate synthase complex	4.90E-04
10	GO:0005886: plasma membrane	7.29E-04
11	GO:0005853: eukaryotic translation elongation factor 1 complex	7.98E-04
12	GO:0005775: vacuolar lumen	1.14E-03
13	GO:0005945: 6-phosphofructokinase complex	1.93E-03
14	GO:0031597: cytosolic proteasome complex	2.86E-03
15	GO:0005773: vacuole	3.28E-03
16	GO:0031595: nuclear proteasome complex	3.36E-03
17	GO:0005779: integral component of peroxisomal membrane	4.47E-03
18	GO:0010494: cytoplasmic stress granule	5.06E-03
19	GO:0016604: nuclear body	5.68E-03
20	GO:0008540: proteasome regulatory particle, base subcomplex	5.68E-03
21	GO:0030176: integral component of endoplasmic reticulum membrane	9.90E-03
22	GO:0005794: Golgi apparatus	1.49E-02
23	GO:0005778: peroxisomal membrane	2.60E-02
24	GO:0030529: intracellular ribonucleoprotein complex	2.82E-02
25	GO:0005667: transcription factor complex	3.05E-02
26	GO:0005618: cell wall	3.05E-02
27	GO:0000151: ubiquitin ligase complex	3.41E-02
28	GO:0005777: peroxisome	3.83E-02
29	GO:0031902: late endosome membrane	4.56E-02
30	GO:0005789: endoplasmic reticulum membrane	4.57E-02