co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G03230

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009877: nodulation	0.00E+00
2	GO:1904962: plastid to vacuole vesicle-mediated transport	0.00E+00
3	GO:0042906: xanthine transport	0.00E+00
4	GO:0071211: protein targeting to vacuole involved in autophagy	0.00E+00
5	GO:0030644: cellular chloride ion homeostasis	0.00E+00
6	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	9.88E-05
7	GO:1900060: negative regulation of ceramide biosynthetic process	9.88E-05
8	GO:0015720: allantoin transport	2.32E-04
9	GO:0006883: cellular sodium ion homeostasis	2.32E-04
10	GO:0048255: mRNA stabilization	2.32E-04
11	GO:0015857: uracil transport	2.32E-04
12	GO:1902884: positive regulation of response to oxidative stress	2.32E-04
13	GO:0090156: cellular sphingolipid homeostasis	2.32E-04
14	GO:0034976: response to endoplasmic reticulum stress	2.84E-04
15	GO:1902448: positive regulation of shade avoidance	3.86E-04
16	GO:0071705: nitrogen compound transport	3.86E-04
17	GO:1901562: response to paraquat	3.86E-04
18	GO:0045165: cell fate commitment	3.86E-04
19	GO:0009409: response to cold	4.10E-04
20	GO:1901332: negative regulation of lateral root development	5.54E-04
21	GO:0009765: photosynthesis, light harvesting	7.37E-04
22	GO:0010600: regulation of auxin biosynthetic process	7.37E-04
23	GO:1901002: positive regulation of response to salt stress	7.37E-04
24	GO:0015846: polyamine transport	7.37E-04
25	GO:0016123: xanthophyll biosynthetic process	9.32E-04
26	GO:0009957: epidermal cell fate specification	9.32E-04
27	GO:0010286: heat acclimation	9.73E-04
28	GO:0042732: D-xylose metabolic process	1.14E-03
29	GO:0000060: protein import into nucleus, translocation	1.14E-03
30	GO:0010077: maintenance of inflorescence meristem identity	1.36E-03
31	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.36E-03
32	GO:0009416: response to light stimulus	1.56E-03
33	GO:0009645: response to low light intensity stimulus	1.59E-03
34	GO:0010044: response to aluminum ion	1.59E-03
35	GO:0032880: regulation of protein localization	1.59E-03
36	GO:0010928: regulation of auxin mediated signaling pathway	1.84E-03
37	GO:0006972: hyperosmotic response	2.10E-03
38	GO:0009827: plant-type cell wall modification	2.10E-03
39	GO:0009723: response to ethylene	2.13E-03
40	GO:0009640: photomorphogenesis	2.27E-03
41	GO:0010114: response to red light	2.27E-03
42	GO:0006457: protein folding	2.31E-03
43	GO:0006098: pentose-phosphate shunt	2.37E-03
44	GO:0009644: response to high light intensity	2.45E-03
45	GO:0044550: secondary metabolite biosynthetic process	2.58E-03
46	GO:0048354: mucilage biosynthetic process involved in seed coat development	2.65E-03
47	GO:0000165: MAPK cascade	2.73E-03
48	GO:0010162: seed dormancy process	2.95E-03
49	GO:0009970: cellular response to sulfate starvation	2.95E-03
50	GO:0055062: phosphate ion homeostasis	2.95E-03
51	GO:0007064: mitotic sister chromatid cohesion	2.95E-03
52	GO:0006535: cysteine biosynthetic process from serine	2.95E-03
53	GO:0009688: abscisic acid biosynthetic process	2.95E-03
54	GO:0009641: shade avoidance	2.95E-03
55	GO:0051603: proteolysis involved in cellular protein catabolic process	3.14E-03
56	GO:0030148: sphingolipid biosynthetic process	3.25E-03
57	GO:0009408: response to heat	3.80E-03
58	GO:0050826: response to freezing	3.89E-03
59	GO:0009266: response to temperature stimulus	4.22E-03
60	GO:0009414: response to water deprivation	4.39E-03
61	GO:0090351: seedling development	4.57E-03
62	GO:0019344: cysteine biosynthetic process	5.28E-03
63	GO:0010026: trichome differentiation	5.65E-03
64	GO:0009768: photosynthesis, light harvesting in photosystem I	5.65E-03
65	GO:0048511: rhythmic process	6.03E-03
66	GO:0010431: seed maturation	6.03E-03
67	GO:0009269: response to desiccation	6.03E-03
68	GO:0003333: amino acid transmembrane transport	6.03E-03
69	GO:0010017: red or far-red light signaling pathway	6.42E-03
70	GO:0009693: ethylene biosynthetic process	6.82E-03
71	GO:0007623: circadian rhythm	7.43E-03
72	GO:0009739: response to gibberellin	8.31E-03
73	GO:0010182: sugar mediated signaling pathway	8.50E-03
74	GO:0010468: regulation of gene expression	8.86E-03
75	GO:0006814: sodium ion transport	8.94E-03
76	GO:0006355: regulation of transcription, DNA-templated	1.05E-02
77	GO:0006970: response to osmotic stress	1.24E-02
78	GO:0016126: sterol biosynthetic process	1.28E-02
79	GO:0009911: positive regulation of flower development	1.28E-02
80	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.33E-02
81	GO:0006351: transcription, DNA-templated	1.43E-02
82	GO:0048573: photoperiodism, flowering	1.43E-02
83	GO:0009817: defense response to fungus, incompatible interaction	1.54E-02
84	GO:0018298: protein-chromophore linkage	1.54E-02
85	GO:0000160: phosphorelay signal transduction system	1.60E-02
86	GO:0010218: response to far red light	1.65E-02
87	GO:0016051: carbohydrate biosynthetic process	1.82E-02
88	GO:0009637: response to blue light	1.82E-02
89	GO:0006979: response to oxidative stress	1.94E-02
90	GO:0006629: lipid metabolic process	2.11E-02
91	GO:0008643: carbohydrate transport	2.31E-02
92	GO:0042538: hyperosmotic salinity response	2.57E-02
93	GO:0009585: red, far-red light phototransduction	2.70E-02
94	GO:0009651: response to salt stress	2.81E-02
95	GO:0009909: regulation of flower development	2.90E-02
96	GO:0009620: response to fungus	3.25E-02
97	GO:0009624: response to nematode	3.47E-02
98	GO:0045893: positive regulation of transcription, DNA-templated	4.29E-02
99	GO:0055085: transmembrane transport	4.74E-02
100	GO:0009737: response to abscisic acid	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
2	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
3	GO:0042907: xanthine transmembrane transporter activity	0.00E+00
4	GO:0009045: xylose isomerase activity	0.00E+00
5	GO:0017091: AU-rich element binding	9.88E-05
6	GO:0047216: inositol 3-alpha-galactosyltransferase activity	2.32E-04
7	GO:0080045: quercetin 3'-O-glucosyltransferase activity	2.32E-04
8	GO:0005274: allantoin uptake transmembrane transporter activity	2.32E-04
9	GO:0009001: serine O-acetyltransferase activity	5.54E-04
10	GO:0000254: C-4 methylsterol oxidase activity	5.54E-04
11	GO:0015203: polyamine transmembrane transporter activity	5.54E-04
12	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	7.14E-04
13	GO:0015210: uracil transmembrane transporter activity	7.37E-04
14	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	9.32E-04
15	GO:0080046: quercetin 4'-O-glucosyltransferase activity	1.14E-03
16	GO:0004869: cysteine-type endopeptidase inhibitor activity	1.84E-03
17	GO:0004497: monooxygenase activity	2.32E-03
18	GO:0071949: FAD binding	2.37E-03
19	GO:0000989: transcription factor activity, transcription factor binding	2.37E-03
20	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	2.37E-03
21	GO:0015293: symporter activity	2.54E-03
22	GO:0015174: basic amino acid transmembrane transporter activity	2.65E-03
23	GO:0047372: acylglycerol lipase activity	3.25E-03
24	GO:0008270: zinc ion binding	3.76E-03
25	GO:0004565: beta-galactosidase activity	3.89E-03
26	GO:0008081: phosphoric diester hydrolase activity	3.89E-03
27	GO:0005315: inorganic phosphate transmembrane transporter activity	3.89E-03
28	GO:0031072: heat shock protein binding	3.89E-03
29	GO:0005506: iron ion binding	4.44E-03
30	GO:0003712: transcription cofactor activity	4.57E-03
31	GO:0031409: pigment binding	4.92E-03
32	GO:0008134: transcription factor binding	5.28E-03
33	GO:0003700: transcription factor activity, sequence-specific DNA binding	6.00E-03
34	GO:0004707: MAP kinase activity	6.03E-03
35	GO:0008514: organic anion transmembrane transporter activity	7.23E-03
36	GO:0003756: protein disulfide isomerase activity	7.23E-03
37	GO:0005351: sugar:proton symporter activity	7.26E-03
38	GO:0004197: cysteine-type endopeptidase activity	1.03E-02
39	GO:0000156: phosphorelay response regulator activity	1.08E-02
40	GO:0019825: oxygen binding	1.23E-02
41	GO:0016168: chlorophyll binding	1.33E-02
42	GO:0050897: cobalt ion binding	1.71E-02
43	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.85E-02
44	GO:0044212: transcription regulatory region DNA binding	1.92E-02
45	GO:0035091: phosphatidylinositol binding	2.31E-02
46	GO:0005515: protein binding	2.44E-02
47	GO:0031625: ubiquitin protein ligase binding	2.90E-02
48	GO:0008234: cysteine-type peptidase activity	2.90E-02
49	GO:0045735: nutrient reservoir activity	3.04E-02
50	GO:0080043: quercetin 3-O-glucosyltransferase activity	3.25E-02
51	GO:0080044: quercetin 7-O-glucosyltransferase activity	3.25E-02
52	GO:0020037: heme binding	3.40E-02
53	GO:0051082: unfolded protein binding	3.47E-02
54	GO:0000166: nucleotide binding	3.75E-02
55	GO:0016758: transferase activity, transferring hexosyl groups	3.99E-02
56	GO:0003677: DNA binding	4.16E-02
57	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.46E-02
58	GO:0015144: carbohydrate transmembrane transporter activity	4.62E-02
59	GO:0015297: antiporter activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0035339: SPOTS complex	9.88E-05
2	GO:0000323: lytic vacuole	5.54E-04
3	GO:0009898: cytoplasmic side of plasma membrane	7.37E-04
4	GO:0032586: protein storage vacuole membrane	7.37E-04
5	GO:0005783: endoplasmic reticulum	1.11E-03
6	GO:0016021: integral component of membrane	1.80E-03
7	GO:0000326: protein storage vacuole	2.10E-03
8	GO:0031969: chloroplast membrane	2.32E-03
9	GO:0010494: cytoplasmic stress granule	2.37E-03
10	GO:0005764: lysosome	4.22E-03
11	GO:0030076: light-harvesting complex	4.57E-03
12	GO:0005634: nucleus	4.97E-03
13	GO:0010287: plastoglobule	5.10E-03
14	GO:0005773: vacuole	6.12E-03
15	GO:0009522: photosystem I	8.94E-03
16	GO:0009523: photosystem II	9.39E-03
17	GO:0000932: P-body	1.28E-02
18	GO:0009941: chloroplast envelope	1.53E-02
19	GO:0000151: ubiquitin ligase complex	1.54E-02
20	GO:0009535: chloroplast thylakoid membrane	1.54E-02
21	GO:0043231: intracellular membrane-bounded organelle	2.33E-02
22	GO:0010008: endosome membrane	3.11E-02
23	GO:0009706: chloroplast inner membrane	3.47E-02
24	GO:0005623: cell	4.15E-02
25	GO:0009579: thylakoid	4.47E-02