co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G02890

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
2	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
3	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
4	GO:0042493: response to drug	0.00E+00
5	GO:0042371: vitamin K biosynthetic process	0.00E+00
6	GO:1905499: trichome papilla formation	0.00E+00
7	GO:0042335: cuticle development	5.54E-05
8	GO:0010196: nonphotochemical quenching	7.34E-05
9	GO:0032544: plastid translation	1.20E-04
10	GO:1904966: positive regulation of vitamin E biosynthetic process	1.40E-04
11	GO:1904964: positive regulation of phytol biosynthetic process	1.40E-04
12	GO:0071588: hydrogen peroxide mediated signaling pathway	1.40E-04
13	GO:0015995: chlorophyll biosynthetic process	1.86E-04
14	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.20E-04
15	GO:0080165: callose deposition in phloem sieve plate	3.20E-04
16	GO:0006013: mannose metabolic process	5.26E-04
17	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	5.26E-04
18	GO:0090391: granum assembly	5.26E-04
19	GO:0010623: programmed cell death involved in cell development	5.26E-04
20	GO:0090506: axillary shoot meristem initiation	5.26E-04
21	GO:0009735: response to cytokinin	5.94E-04
22	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	7.22E-04
23	GO:0010239: chloroplast mRNA processing	7.53E-04
24	GO:0010088: phloem development	7.53E-04
25	GO:0009650: UV protection	7.53E-04
26	GO:0006986: response to unfolded protein	7.53E-04
27	GO:0051085: chaperone mediated protein folding requiring cofactor	7.53E-04
28	GO:0015979: photosynthesis	9.16E-04
29	GO:0045454: cell redox homeostasis	9.84E-04
30	GO:0006869: lipid transport	1.13E-03
31	GO:0006564: L-serine biosynthetic process	1.26E-03
32	GO:0010236: plastoquinone biosynthetic process	1.26E-03
33	GO:0045038: protein import into chloroplast thylakoid membrane	1.26E-03
34	GO:0006665: sphingolipid metabolic process	1.26E-03
35	GO:0016042: lipid catabolic process	1.29E-03
36	GO:0009828: plant-type cell wall loosening	1.44E-03
37	GO:0003006: developmental process involved in reproduction	1.55E-03
38	GO:0006014: D-ribose metabolic process	1.55E-03
39	GO:0010027: thylakoid membrane organization	1.71E-03
40	GO:0010067: procambium histogenesis	1.86E-03
41	GO:1901259: chloroplast rRNA processing	1.86E-03
42	GO:0042372: phylloquinone biosynthetic process	1.86E-03
43	GO:0006694: steroid biosynthetic process	1.86E-03
44	GO:0010019: chloroplast-nucleus signaling pathway	1.86E-03
45	GO:0009451: RNA modification	1.91E-03
46	GO:0009627: systemic acquired resistance	1.91E-03
47	GO:0071446: cellular response to salicylic acid stimulus	2.18E-03
48	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.18E-03
49	GO:0009772: photosynthetic electron transport in photosystem II	2.18E-03
50	GO:0000160: phosphorelay signal transduction system	2.33E-03
51	GO:0048564: photosystem I assembly	2.52E-03
52	GO:0045292: mRNA cis splicing, via spliceosome	2.52E-03
53	GO:0006353: DNA-templated transcription, termination	2.52E-03
54	GO:0031540: regulation of anthocyanin biosynthetic process	2.52E-03
55	GO:0009808: lignin metabolic process	2.88E-03
56	GO:0034599: cellular response to oxidative stress	2.93E-03
57	GO:0009826: unidimensional cell growth	3.07E-03
58	GO:0000373: Group II intron splicing	3.26E-03
59	GO:0042761: very long-chain fatty acid biosynthetic process	3.65E-03
60	GO:0006949: syncytium formation	4.06E-03
61	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.41E-03
62	GO:0043085: positive regulation of catalytic activity	4.48E-03
63	GO:0009664: plant-type cell wall organization	4.52E-03
64	GO:0055114: oxidation-reduction process	4.67E-03
65	GO:0009736: cytokinin-activated signaling pathway	4.85E-03
66	GO:0016024: CDP-diacylglycerol biosynthetic process	4.92E-03
67	GO:2000012: regulation of auxin polar transport	5.37E-03
68	GO:0010229: inflorescence development	5.37E-03
69	GO:0005986: sucrose biosynthetic process	5.37E-03
70	GO:0048467: gynoecium development	5.84E-03
71	GO:0010143: cutin biosynthetic process	5.84E-03
72	GO:0010223: secondary shoot formation	5.84E-03
73	GO:0005985: sucrose metabolic process	6.32E-03
74	GO:0010025: wax biosynthetic process	6.81E-03
75	GO:0042023: DNA endoreduplication	6.81E-03
76	GO:0000027: ribosomal large subunit assembly	7.32E-03
77	GO:0007010: cytoskeleton organization	7.32E-03
78	GO:0006418: tRNA aminoacylation for protein translation	7.84E-03
79	GO:0010017: red or far-red light signaling pathway	8.92E-03
80	GO:0016226: iron-sulfur cluster assembly	8.92E-03
81	GO:0030245: cellulose catabolic process	8.92E-03
82	GO:0009411: response to UV	9.48E-03
83	GO:0040007: growth	9.48E-03
84	GO:0001944: vasculature development	9.48E-03
85	GO:0042744: hydrogen peroxide catabolic process	9.84E-03
86	GO:0010091: trichome branching	1.01E-02
87	GO:0010089: xylem development	1.01E-02
88	GO:0080022: primary root development	1.12E-02
89	GO:0000413: protein peptidyl-prolyl isomerization	1.12E-02
90	GO:0010087: phloem or xylem histogenesis	1.12E-02
91	GO:0009958: positive gravitropism	1.18E-02
92	GO:0006662: glycerol ether metabolic process	1.18E-02
93	GO:0007623: circadian rhythm	1.19E-02
94	GO:0048544: recognition of pollen	1.25E-02
95	GO:0042752: regulation of circadian rhythm	1.25E-02
96	GO:0019252: starch biosynthetic process	1.31E-02
97	GO:0000302: response to reactive oxygen species	1.37E-02
98	GO:0016132: brassinosteroid biosynthetic process	1.37E-02
99	GO:0006412: translation	1.50E-02
100	GO:0010252: auxin homeostasis	1.58E-02
101	GO:0009658: chloroplast organization	1.85E-02
102	GO:0042254: ribosome biogenesis	1.89E-02
103	GO:0048481: plant ovule development	2.16E-02
104	GO:0018298: protein-chromophore linkage	2.16E-02
105	GO:0010311: lateral root formation	2.23E-02
106	GO:0009834: plant-type secondary cell wall biogenesis	2.31E-02
107	GO:0009631: cold acclimation	2.39E-02
108	GO:0007568: aging	2.39E-02
109	GO:0016051: carbohydrate biosynthetic process	2.55E-02
110	GO:0006839: mitochondrial transport	2.80E-02
111	GO:0030001: metal ion transport	2.80E-02
112	GO:0008283: cell proliferation	3.06E-02
113	GO:0010114: response to red light	3.06E-02
114	GO:0008643: carbohydrate transport	3.23E-02
115	GO:0009408: response to heat	3.39E-02
116	GO:0042538: hyperosmotic salinity response	3.59E-02
117	GO:0009809: lignin biosynthetic process	3.78E-02
118	GO:0051603: proteolysis involved in cellular protein catabolic process	3.87E-02
119	GO:0009740: gibberellic acid mediated signaling pathway	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
2	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
3	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
4	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
5	GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity	0.00E+00
6	GO:0047661: amino-acid racemase activity	0.00E+00
7	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
8	GO:0005048: signal sequence binding	0.00E+00
9	GO:0050614: delta24-sterol reductase activity	0.00E+00
10	GO:0019843: rRNA binding	1.21E-05
11	GO:0051920: peroxiredoxin activity	5.48E-05
12	GO:0016209: antioxidant activity	9.51E-05
13	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.40E-04
14	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	3.20E-04
15	GO:0016630: protochlorophyllide reductase activity	3.20E-04
16	GO:0004617: phosphoglycerate dehydrogenase activity	3.20E-04
17	GO:0043621: protein self-association	4.58E-04
18	GO:0002161: aminoacyl-tRNA editing activity	5.26E-04
19	GO:0016788: hydrolase activity, acting on ester bonds	5.58E-04
20	GO:0016851: magnesium chelatase activity	7.53E-04
21	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	7.53E-04
22	GO:0001872: (1->3)-beta-D-glucan binding	7.53E-04
23	GO:0052689: carboxylic ester hydrolase activity	8.73E-04
24	GO:0043495: protein anchor	9.98E-04
25	GO:0004659: prenyltransferase activity	9.98E-04
26	GO:0009922: fatty acid elongase activity	1.26E-03
27	GO:0004040: amidase activity	1.26E-03
28	GO:0003959: NADPH dehydrogenase activity	1.26E-03
29	GO:0000156: phosphorelay response regulator activity	1.35E-03
30	GO:0004130: cytochrome-c peroxidase activity	1.55E-03
31	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.55E-03
32	GO:0016688: L-ascorbate peroxidase activity	1.55E-03
33	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.55E-03
34	GO:0004747: ribokinase activity	1.86E-03
35	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.86E-03
36	GO:0004559: alpha-mannosidase activity	1.86E-03
37	GO:0016157: sucrose synthase activity	1.86E-03
38	GO:0019899: enzyme binding	2.18E-03
39	GO:0008289: lipid binding	2.22E-03
40	GO:0008312: 7S RNA binding	2.52E-03
41	GO:0008865: fructokinase activity	2.52E-03
42	GO:0052747: sinapyl alcohol dehydrogenase activity	2.52E-03
43	GO:0004601: peroxidase activity	3.22E-03
44	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	3.26E-03
45	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	4.06E-03
46	GO:0008047: enzyme activator activity	4.06E-03
47	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.20E-03
48	GO:0000049: tRNA binding	4.92E-03
49	GO:0045551: cinnamyl-alcohol dehydrogenase activity	4.92E-03
50	GO:0030246: carbohydrate binding	5.04E-03
51	GO:0004565: beta-galactosidase activity	5.37E-03
52	GO:0005528: FK506 binding	7.32E-03
53	GO:0051536: iron-sulfur cluster binding	7.32E-03
54	GO:0004519: endonuclease activity	7.71E-03
55	GO:0051087: chaperone binding	7.84E-03
56	GO:0003735: structural constituent of ribosome	7.94E-03
57	GO:0033612: receptor serine/threonine kinase binding	8.38E-03
58	GO:0030570: pectate lyase activity	9.48E-03
59	GO:0008810: cellulase activity	9.48E-03
60	GO:0022891: substrate-specific transmembrane transporter activity	9.48E-03
61	GO:0005102: receptor binding	1.06E-02
62	GO:0047134: protein-disulfide reductase activity	1.06E-02
63	GO:0004812: aminoacyl-tRNA ligase activity	1.06E-02
64	GO:0008080: N-acetyltransferase activity	1.18E-02
65	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	1.18E-02
66	GO:0008017: microtubule binding	1.25E-02
67	GO:0004791: thioredoxin-disulfide reductase activity	1.25E-02
68	GO:0008194: UDP-glycosyltransferase activity	1.34E-02
69	GO:0004518: nuclease activity	1.44E-02
70	GO:0004197: cysteine-type endopeptidase activity	1.44E-02
71	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.51E-02
72	GO:0016791: phosphatase activity	1.58E-02
73	GO:0016597: amino acid binding	1.71E-02
74	GO:0016168: chlorophyll binding	1.86E-02
75	GO:0030247: polysaccharide binding	2.00E-02
76	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.04E-02
77	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.39E-02
78	GO:0030145: manganese ion binding	2.39E-02
79	GO:0005509: calcium ion binding	3.15E-02
80	GO:0051287: NAD binding	3.50E-02
81	GO:0003777: microtubule motor activity	4.06E-02
82	GO:0008234: cysteine-type peptidase activity	4.06E-02
83	GO:0045735: nutrient reservoir activity	4.26E-02
84	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.55E-02
85	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.55E-02
86	GO:0051082: unfolded protein binding	4.85E-02
87	GO:0016491: oxidoreductase activity	4.87E-02
88	GO:0016746: transferase activity, transferring acyl groups	4.95E-02
89	GO:0015035: protein disulfide oxidoreductase activity	4.95E-02
90	GO:0046983: protein dimerization activity	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.58E-10
2	GO:0009570: chloroplast stroma	1.42E-09
3	GO:0009534: chloroplast thylakoid	1.74E-08
4	GO:0009543: chloroplast thylakoid lumen	5.79E-07
5	GO:0048046: apoplast	1.26E-06
6	GO:0009579: thylakoid	2.81E-05
7	GO:0009535: chloroplast thylakoid membrane	4.48E-05
8	GO:0046658: anchored component of plasma membrane	4.99E-05
9	GO:0009941: chloroplast envelope	1.19E-04
10	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.40E-04
11	GO:0009515: granal stacked thylakoid	1.40E-04
12	GO:0009923: fatty acid elongase complex	1.40E-04
13	GO:0005618: cell wall	2.71E-04
14	GO:0080085: signal recognition particle, chloroplast targeting	3.20E-04
15	GO:0031225: anchored component of membrane	3.44E-04
16	GO:0031977: thylakoid lumen	3.73E-04
17	GO:0010007: magnesium chelatase complex	5.26E-04
18	GO:0009505: plant-type cell wall	9.20E-04
19	GO:0005576: extracellular region	9.99E-04
20	GO:0000793: condensed chromosome	1.55E-03
21	GO:0043231: intracellular membrane-bounded organelle	1.56E-03
22	GO:0000794: condensed nuclear chromosome	2.18E-03
23	GO:0009533: chloroplast stromal thylakoid	2.18E-03
24	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.88E-03
25	GO:0031969: chloroplast membrane	4.23E-03
26	GO:0090404: pollen tube tip	4.48E-03
27	GO:0005578: proteinaceous extracellular matrix	5.37E-03
28	GO:0000312: plastid small ribosomal subunit	5.84E-03
29	GO:0005764: lysosome	5.84E-03
30	GO:0009654: photosystem II oxygen evolving complex	7.84E-03
31	GO:0042651: thylakoid membrane	7.84E-03
32	GO:0005840: ribosome	1.01E-02
33	GO:0016020: membrane	1.18E-02
34	GO:0009523: photosystem II	1.31E-02
35	GO:0019898: extrinsic component of membrane	1.31E-02
36	GO:0005615: extracellular space	1.34E-02
37	GO:0010319: stromule	1.64E-02
38	GO:0005886: plasma membrane	1.68E-02
39	GO:0005874: microtubule	2.22E-02
40	GO:0000325: plant-type vacuole	2.39E-02
41	GO:0005819: spindle	2.72E-02